Publications

Chundawat, S.P.S., Bellesia, G., Uppugundla, N., Sousa, L. da C., Gao, D., Cheh, A.M., Agarwal, U.P., Bianchetti, C.M., Phillips, G.N., Langan, P., et al. "Restructuring the crystalline cellulose hydrogen bond network enhances its depolymerization rate." Journal of the American Chemical Society 133,29, 11163–11174+ (2011). [DOI: 10.1021/ja2011115]

Chundawat, S.P.S., Donohoe, B.S., Sousa, L. da C., Elder, T., Agarwai, U.P., Lu, F., Ralph, J., Himmel, M., Balan, V. & Dale, B.E. "Multi-scale visualization and characterization of plant cell wall deconstruction during thermochemical pretreatment." Energy and Environmental Science 4, 973–984+ (2011). [DOI: 10.1039/C0EE00574F]

Chundawat, S.P.S., Lipton, M.S., Purvine, S.O., Uppugundla, N., Gao, D., Balan, V. & Dale, B.E. "Proteomics-based compositional analysis of complex cellulase–hemicellulase mixtures." Journal of Proteome Research 10, 4365–4372+ (2011). [DOI: 10.1021/pr101234z]

Chylla, R.A., Hu, K., Ellinger, J.J. & Markley, J.L. "Deconvolution of two-dimensional NMR spectra by fast maximum likelihood reconstruction: application to quantitative metabolomics." Analytical Chemistry 83,12, 4871–80+ (2011). [DOI: 10.1021/ac200536b]

Cole, J.R., Wang, Q., Chai, B. & Tiedje, J.M. "The Ribosomal Database Project: sequences and software for high-throughput rRNA analysis." in Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 313–324+ (Wiley-Blackwell, 2011).

Cornish, A.J., Gärtner, K., Yang, H., Peters, J.W. & Hegg, E.L. "Mechanism of proton transfer in [FeFe]-hydrogenase from Clostridium pasteurianum." The Journal of Biological Chemistry 286,44, 38341–3847+ (2011). [DOI: 10.1074/jbc.M111.254664]

Davidson, R., Hansey, C.N., Gowda, M., Childs, K.L., Lin, H., Vailancourt, B., Sekhon, R.S., de Leon, N., Kaeppler, S.M., Jiang, N., et al. "Utility of RNA sequencing for analysis of maize reproductive transcriptomes." The Plant Genome 4,3, 191–203+ (2011). [DOI: 10.3835/plantgenome2011.05.0015]

Donath, M.J., Dominguez, M.A. & Withers, S.T. "Development of an automated platform for high-throughput P1-phage transduction of Escherichia coli." Journal of Laboratory Automation 16,2, 141–147+ (2011). [DOI: 10.1016/j.jala.2010.08.005]

Donohue, T. "Great Lakes Bioenergy Research Center." Industrial Biotechnology 7,4, 255–256+ (2011). [DOI: 10.1089/ind.2011.7.255.]

Egbendewe-Mondzozo, A., Swinton, S.M., Bals, B.D. & Dale, B.E. Can dispersed biomass processing protect the environment and cover the bottom line for biofuel? (MSU Report) Michigan State University Staff Paper 2011-15. http://ageconsearch.umn.edu/bitstream/119348/2/StaffPaperEgbendeweMondozo2011-15.pdf (2011)

Egbendewe-Mondzozo, A., Swinton, S.M., Izaurralde, R.C., Manowitz, D. & Zhang, X. "Biomass supply from alternative cellulosic crops and crop residues: a spatially explicit bioeconomic modeling approach." Biomass and Bioenergy 35,11, 4636–4647+ (2011). [DOI: 10.1016/j.biombioe.2011.09.010]

Eranki, P., Bals, B.D. & Dale, B.E. "Advanced regional biomass processing depots: a key to the logistical challenges of the cellulosic biofuel industry." Biofuels, Bioproducts and Biorefining 5,6, 621–630+ (2011). [DOI: 10.1002/bbb.318]

Eranki, P.L. & Dale, B.E. "Comparative life cycle assessment of centralized and distributed biomass processing systems combined with mixed feedstock landscapes." Global Change Biology – Bioenergy 3,6, 427–438+ (2011). [DOI: 10.1111/j.1757-1707.2011.01096.x]

Fisher, A.C., Haitjema, C.H., Guarino, C., Celik, E., Endicott, C.E., Reading, C.A., Merritt, J.H., Ptak, C., Zhang, S. & DeLisa, M.P. "Production of secretory and extracellular N-linked glycoproteins in Escherichia coli." Applied and Environmental Microbiology 77,3, 871–81+ (2011). [DOI: 10.1128/AEM.01901-10]

Fletcher, R.J., Robertson, B.A., Evans, J., Doran, P.J., Alavalapati, J.R. & Schemske, D.J. "Biodiversity conservation in the era of biofuels: risks and opportunities." Frontiers in Ecology and the Environment 9,3, 161–168+ (2011). [DOI: 10.1890/090091]

Gao, D., Chundawat, S.P.S., Uppugundla, N., Balan, V. & Dale, B.E. "Binding characteristics of Trichoderma reesei cellulases on untreated, ammonia fiber expansion (AFEX), and dilute-acid pretreated lignocellulosic biomass." Biotechnology and Bioengineering 108,8, 1788–1800+ (2011). [DOI: 10.1002/bit.23140]

Gao, D., Uppaguntala, N., Chundawat, S.P., Liu, T., Hermanson, S., Gowda, K., Brumm, P., Balan, V. & Dale, B.E. "Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides." Biotechnology for Biofuels 4,5, 5+ (2011). [DOI: 10.1186/1754-6834-4-5]

Gao, J., Qian, L., Thelen, K.D., Hao, X., Sousa, L. da C., Balan, V. & Dale, B.E. "Corn harvest strategies for combined starch and cellulosic bioprocessing to ethanol." Agronomy Journal 103,3, 844–850+ (2011). [DOI: 10.2134/agronj2010.0445]

Gardner, J.G., Zeitler, L.A., Wigstrom, W.J.S., Engel, K.C. & Keating, D.H. "A high-throughput solid phase screening method for identification of lignocellulose-degrading bacteria from environmental isolates." Biotechnology Letters 34,1, 81–89+ (2011). [DOI: 10.1007/s10529-011-0742-1]

Gelfand, I., Zenone, T., Jasrotia, P., Chen, J., Hamilton, S. & Robertson, P. "Carbon debt of Conservation Reserve Program (CRP) grasslands converted to bioenergy production." Proceedings of the National Academy of Sciences of the United States of America 108, 13864–13869+ (2011). [DOI: 10.1073/pnas.1017277108]

Gille, S., de Souza, A., Xiong, G., Benz, M., Cheng, K., Schultink, A., Reca, I.-B. & Pauly, M. "O-Acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain." The Plant Cell 23,11, 4041–53+ (2011). [DOI: 10.1105/tpc.111.091728]

Gonzales-Vigil, E., Bianchetti, C.M., Phillips, G.N. & Howe, G.A. "Adaptive evolution of threonine deaminase in plant defense against insect herbivores." Proceedings of the National Academy of Sciences of the United States of America 108,14, 5897–5902+ (2011). [DOI: 10.1073/pnas.1016157108]

Grubbs, K.J., Biedermann, P.H., Suen, G., Adams, S.M., Moeller, J.A., Klassen, J.L., Goodwin, L.A., Woyke, T., Munk, C., Bruce, D., et al. "Genome sequence of Streptomyces griseus strain (XyelbKG-1), an ambrosia beetle-associated actinomycete." Journal of Bacteriology 193,11, 2890–2891+ (2011). [DOI: 10.1128/JB.00330-11]

Gürbüz, E.I., Alonso, D.M., Bond, J.Q. & Dumesic, J.A. "Reactive extraction of levulinate esters and conversion to γ-valerolactone for production of liquid fuels." ChemSusChem 4,3, 357–361+ (2011). [DOI: 10.1002/cssc.201000396]

Gürbüz, E.I., Braden, D.J. & Dumesic, J.A. "Aqueous phase catalytic processing in biomass valorization to H2 and liquid fuels." in Renewable Resources and Renewal Energy: A Global Challenge. 37–66+ (CRC Press, 2011).