Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2025	Adhikari, B., Verchot, J., Brandizzi, F. & Ko, D.K. "ER stress and viral defense: advances and future perspectives on plant unfolded protein response in pathogenesis." Journal of Biological Chemistry 301,4, 108354+ (2025). [DOI: 10.1016/j.jbc.2025.108354] DOI Google Scholar
2025	Alvarenga, F.B.M., Barros, K.O., Batista, T.M., Souza, G.F.L., Santos, A.R.O., Abegg, M.A., Sato, T.K., Hittinger, C.T., Lachance, M.-A. & Rosa, C.A. "Vanderwaltozyma urihicola sp. nov., a yeast species isolated from rotting wood and beetles in a Brazilian Amazonian rainforest biome." International Journal of Systematic and Evolutionary Microbiology 75,3, 006718+ (2025). [DOI: 10.1099/ijsem.0.006718] DOI Google Scholar
2025	Aranguiz, K., Horianopoulos, L.C., Elkin, L., Abá, K.S., Jordahl, D., Overmyer, K.A., Wrobel, R.L., Coon, J.J., Shiu, S.-H., Rokas, A., et al. "Machine learning reveals genes impacting oxidative stress resistance across yeasts." Nature Communications 16,1, 5866+ (2025). [DOI: 10.1038/s41467-025-60189-3] DOI Google Scholar
2025	Baek, D., Abdulghani, A.J.A., Walsh, D.J., Hofsommer, D.T., Gerken, J.B., Shi, C., Chen, E.Y.-X., Hermans, I. & Stahl, S.S. "Can the Hock process be used to produce phenol from polystyrene?" Journal of the American Chemical Society 147,10, 8687-8694+ (2025). [DOI: 10.1021/jacs.4c18143] DOI Google Scholar
2025	Banta, A.B., Cuellar, R.A., Nadig, N., Davis, B.C. & Peters, J.M. "The promise of CRISPR-associated transposons for bacterial functional genomics." Current Opinion in Microbiology 83, 102563+ (2025). [DOI: 10.1016/j.mib.2024.102563] DOI Google Scholar
2025	Barten, L.M., Crandall, J.G., Xie, D., Serate, J., Handowski, E., Jen, A., Overmyer, K.A., Coon, J.J., Hittinger, C.T., Landick, R., et al. "pH adjustment increases biofuel production from inhibitory switchgrass hydrolysates." Bioresource Technology 432, 132651+ (2025). [DOI: 10.1016/j.biortech.2025.132651] DOI Google Scholar
2025	Boismier, E.C., Aboulnaga, E.A. & TerAvest, M.A. "Zymomonas mobilis: bringing an ancient human tool into the genomic era." Current Opinion in Biotechnology 92, 103257+ (2025). [DOI: 10.1016/j.copbio.2025.103257] DOI Google Scholar
2025	Bozek, A., Mathis, F., Guillaumat, L., Mussig, J., Boizot, N., Ismael, A., Ralph, J., Lu, F., Sibout, R. & Beaugrand, J. "Determination of a suitable molar absorption coefficient (epsilon) for lignin analysis of fibrous plants using the CASA method." International Journal of Biological Macromolecules 308,Part 1, 142324+ (2025). [DOI: 10.1016/j.ijbiomac.2025.142324] DOI Google Scholar
2025	Bryson, A.E., Childs, K.L., Schlecht, N., Mathieu, D., Hamilton, J.P., Xin, H., Jiang, J., Buell, R. & Hamberger, B. "A high-quality genome assembly of the tetraploid Teucrium chamaedrys unveils a recent whole genome duplication and a large biosynthetic gene cluster for diterpenoid metabolism." Plant Communications DOI:10.1016/j.xplc.2025.101393, 101393+ (2025). [DOI: 10.1016/j.xplc.2025.101393] DOI Google Scholar
2025	Chakraborty, P., Guber, A. & Kravchenko, A. "Microbial O2 consumption as a function of pore structure in soils of sorghum, switchgrass, and prairie vegetation systems." Vadose Zone Journal 24,1, (2025). [DOI: 10.1002/vzj2.70001] DOI Google Scholar
2025	Clark, N.L., Hittinger, C.T., Li-Byarlay, H., Rokas, A., Sackton, T.B. & Unckless, R.L. "Integrating intermediate traits in phylogenetic genotype-to-phenotype studies." Integrative and Comparative Biology DOI:10.1093/icb/icaf037, (2025). [DOI: 10.1093/icb/icaf037] DOI Google Scholar
2025	Córdova, C., Kravchenko, A.N., Miesel, J.R. & Robertson, P. "Soil carbon change in intensive agriculture after 25 years of conservation management." Geoderma 453, 117133+ (2025). [DOI: 10.1016/j.geoderma.2024.117133] DOI Google Scholar
2025	Cresswell, R., Dickson, A., Robertson, M., Gallagher, S., Risani, R., Le Guen, M.J., Temple, H., Liszka, A., Donaldson, L., Kirby, N., et al. "The molecular architecture distinctions between compression, opposite and normal wood of Pinus radiata." Frontiers in Plant Science 16, 1576928+ (2025). [DOI: 10.3389/fpls.2025.1576928] DOI Google Scholar
2025	Cross, M.C.G., Aboulnaga, E. & TerAvest, M.A. "A small number of point mutations confer formate tolerance in Shewanella oneidensis." Applied and Environmental Microbiology 91,5, (2025). [DOI: 10.1128/aem.01968-24] DOI Google Scholar
2025	Cueny, R.R., Voter, A.F., McKenzie, A.M., Morgenstern, M., Myers, K.S., Place, M.M., Peters, J.M., Coon, J.J. & Keck, J.L. "Altering translation allows E. coli to overcome G-quadruplex stabilizers." Nucleic Acids Research 53,6, (2025). [DOI: 10.1093/nar/gkaf264] DOI Google Scholar
2025	Dai, T., Ellebracht, N.C., Hunter-Sellars, E., Aui, A., Goldstein, H.M., Li, W., Hellwinckel, C.M., Price, L., Wong, A.A., Nico, P., et al. "Land-based resources for engineered carbon dioxide removal in the United States exceed the expected needs." One Earth DOI: 10.1016/j.oneear.2025.101349, 101349+ (2025). [DOI: 10.1016/j.oneear.2025.101349] DOI Google Scholar
2025	David, K.T., Schraiber, J.G., Crandall, J.G., Labella, A.L., Opulente, D.A., Harrison, M.-C., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., et al. "Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts." Proceedings of the National Academy of Sciences of the United States of America 122,23, (2025). [DOI: 10.1073/pnas.2500165122] DOI Google Scholar
2025	Falvo, G. & Robertson, P. "Nature-based climate solutions can help mitigate the radiative forcing that follows deforestation." Communications Earth and Environment 6, 425+ (2025). [DOI: 10.1038/s43247-025-02291-4] DOI Google Scholar
2025	Falvo, G., Zhang, Y., Abraha, M., Mosier, S., Su, Y.-J., Lei, C., Chen, J., Cotrufo, F. & Robertson, P. "Combining eddy covariance towers, field measurements, and the MEMS 2 ecosystem model improves confidence in the climate impacts of bioenergy with carbon capture and storage." Global Change Biology – Bioenergy 17,3, (2025). [DOI: 10.1111/gcbb.70023] DOI Google Scholar
2025	Feng, B., Li, Y., Xu, B., Liu, H., Steenwyk, J.L., David, K.T., Tian, X., Goncalves, C., Opulente, D.A., Labella, A.L., et al. "Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage." Molecular Systems Biology DOI:10.1038/s44320-025-00118-0, (2025). [DOI: 10.1038/s44320-025-00118-0] DOI Google Scholar
2025	Geissler, C.H., Haan, N.L., Basso, B., Fowler, A., Landis, D.A., Lark, T.J. & Maravelias, C.T. "A multi-objective optimization model for cropland design considering profit, biodiversity, and ecosystem services." Ecological Modelling 500, 110954+ (2025). [DOI: 10.1016/j.ecolmodel.2024.110954] DOI Google Scholar
2025	Hellinger, J., Ralph, J. & Karlen, S.D. "p‐Coumaroylated lignins are natively produced in three rosales families." ACS Omega 10,6, 6220–6227+ (2025). [DOI: 10.1021/acsomega.4c11429] DOI Google Scholar
2025	Hussain, M.Z., Hamilton, S.K., Basso, B. & Robertson, P. "Phosphorus budgets of intensively managed row crops at a long-term agroecosystem research site in the upper US Midwest." Journal of Environmental Quality 54,3, 720-731+ (2025). [DOI: 10.1002/jeq2.70000] DOI Google Scholar
2025	Im, J.H., Kim, W.-C., Han, K.-H. & Ko, J.-H. "XERICO as a target for engineering stress-resilient crops: mechanisms, applications, and future directions." Plant Physiology and Biochemistry 225, 110013+ (2025). [DOI: 10.1016/j.plaphy.2025.110013] DOI Google Scholar
2025	Karaca-Bulut, M., Gonzales-Vigil, E., Muchero, W. & Mansfield, S.D. "Elucidating the drought-responsive changes in Poplar cuticular waxes: a GWAS analysis of genes involved in fatty acid biosynthesis." Tree Physiology DOI: 10.1093/treephys/tpaf060, (2025). [DOI: 10.1093/treephys/tpaf060] DOI Google Scholar