Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, et al (2018) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization. The Plant Journal 93: 338-354+. doi: 10.1111/tpj.13781 DOI Google Scholar	Feedstocks
2018	Opulente DA, Rollinson EJ, Bernick-Roehr C, Hulfachor AB, Rokas A, Kurtzman CP, Hittinger CT (2018) Factors driving metabolic diversity in the budding yeast subphylum. BMC Biology 16: 26+. doi: 10.1186/s12915-018-0498-3 DOI Google Scholar	Conversion
2018	Evans J, Sanciangco MD, Lau KH, Crisovan E, Barry K, Daum C, Hundley H, Jenkins J, Kennedy M, Kunde-Ramamoorthy G, et al (2018) Extensive genetic diversity is present within North American switchgrass germplasm. The Plant Genome 11: 170055+. doi: 10.3835/plantgenome2017.06.0055 DOI Google Scholar	Feedstocks
2018	Yao S, Mobley JK, Ralph J, Crocker M, Parkin S, Selegue JP, Meier MS (2018) Mechanochemical treatment facilitates two-step oxidative depolymerization of kraft lignin. ACS Sustainable Chemistry & Engineering. doi: 10.1021/acssuschemeng.7b04597 DOI Google Scholar	Feedstocks
2018	Mellmer MA, Sanpitakseree C, Demir B, Bai P, Ma K, Neurock M, Dumesic JA (2018) Solvent-enabled control of reactivity for liquid-phase reactions of biomass-derived compounds. Nature Catalysis 1: 199-207+. doi: 10.1038/s41929-018-0027-3 DOI Google Scholar	Conversion
2018	Pan S, Reed JL (2018) Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries. Current Opinion in Biotechnology 51: 103-108+. doi: 10.1016/j.copbio.2017.12.012 DOI Google Scholar	Conversion
2018	Zhou X, Shen X-X, Hittinger CT, Rokas A (2018) Evaluating fast maximum likelihood-based phylogenetic programs using empirical phylogenomic data sets. Molecular Biology and Evolution 35: 486-503+. doi: 10.1093/molbev/msx302 DOI Google Scholar	Conversion
2018	Flores-Gómez CA, Silva EME, Zhong C, Dale BE, Sousa L da C, Balan V (2018) Conversion of lignocellulosic agave residues into liquid biofuels using an AFEX™-based biorefinery. Biotechnology for Biofuels 11: 7+. doi: 10.1186/s13068-017-0995-6 DOI Google Scholar	Deconstruction
2018	Motagamwala AH, Won W, Sener C, Alonso DM, Maravelias CT, Dumesic JA (2018) Toward biomass-derived renewable plastics: production of 2,5-furandicarboxylic acid from fructose. Science Advances. doi: 10.1126/sciadv.aap9722 DOI Google Scholar	Conversion
2018	Regner M, Bartuce A, Padmakshan D, Ralph J, Karlen SD (2018) Reductive cleavage method for quantitation of monolignols and low‐abundance monolignol conjugates. ChemSusChem. doi: 10.1002/cssc.201800617 DOI Google Scholar	Feedstocks
2018	Gall DL, Kontur WS, Lan W, Kim H, Li Y, Ralph J, Donohue TJ, Noguera DR (2018) In vitro enzymatic depolymerization of lignin with release of syringyl, guaiacyl, and tricin units. Applied and Environmental Microbiology. doi: 10.1128/AEM.02076-17 DOI Google Scholar	Feedstocks, Conversion
2018	Ng RTL, Kurniawan D, Wang H, Mariska B, Wu W, Maravelias CT (2018) Integrated framework for designing spatially explicit biofuel supply chains. Applied Energy 216: 116-131+. doi: 10.1016/j.apenergy.2018.02.077 DOI Google Scholar	Deconstruction
2018	Rencoret J, Kim H, Evaristo AB, Gutiérrez A, Ralph J, del Rio JC (2018) Variability in lignin composition and structure in cell walls of different parts of macaúba (Acrocomia aculeata) palm fruit. Journal of Agricultural and Food Chemistry 66: 138-153+. doi: 10.1021/acs.jafc.7b04638 DOI Google Scholar	Feedstocks
2018	Kim S, Zhang X, Dale B, Reddy AD, Jones CD, Cronin K, Izaurralde RC, Runge T, Sharara M (2018) Corn stover cannot simultaneously meet both the volume and GHG reduction requirements of the renewable fuel standard. Biofuels, Bioproducts and Biorefining 12: 203-212+. doi: 10.1002/bbb.1830 DOI Google Scholar	Sustainability
2018	Hamilton SK, Hussain MZ, Lowrie C, Basso B, Robertson GP (2018) Evapotranspiration is resilient in the face of land cover and climate change in a humid temperate catchment. Hydrological Processes 32: 655-663+. doi: 10.1002/hyp.11447 DOI Google Scholar	Sustainability
2018	Tsuji Y, Takata N, Sakamoto S, Nakagawa-Izumi A, Taniguchi T, Ralph J, Mitsuda N, Kajita S (2018) Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis. Physiologia Plantarum. doi: 10.1111/ppl.12684 DOI Google Scholar	Feedstocks
2018	Sardi M, Paithane V, Place M, Robinson DE, Hose J, Wohlbach DJ, Gasch AP (2018) Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance. PLOS Genetics. doi: 10.1371/journal.pgen.1007217 DOI Google Scholar	Conversion
2018	Jach-Smith LC, Jackson RD (2018) N addition undermines N supplied by arbuscular mycorrhizal fungi to native perennial grasses. Soil Biology and Biochemistry 116: 148-157+. doi: 10.1016/j.soilbio.2017.10.009 DOI Google Scholar	Sustainability
2018	Lin Y, Karlen SD, Ralph J, King JY (2018) Short-term facilitation of microbial litter decomposition by ultraviolet radiation. Science of the Total Environment 615: 838-848+. doi: 10.1016/j.scitotenv.2017.09.239 DOI Google Scholar	Feedstocks
2018	Wills BD, Landis DA (2018) The role of ants in north temperate grasslands: a review. Oecologia 186: 323-338+. doi: 10.1007/s00442-017-4007-0 DOI Google Scholar	Sustainability
2018	Jones CD, Oates LG, Robertson P, Izaurralde C (2018) Perennialization and cover cropping mitigate soil carbon loss from residue harvesting. Journal of Environmental Quality. doi: 10.2134/jeq2017.04.0177 DOI Google Scholar	Sustainability
2018	Abraha M, Hamilton SK, Chen J, Robertson P (2018) Ecosystem carbon exchange on conversion of Conservation Reserve Program grasslands to annual and perennial cropping systems. Agricultural and Forest Meteorology 253-254: 151-160+. doi: 10.1016/j.agrformet.2018.02.016 DOI Google Scholar	Sustainability
2018	Song B, Li B, Wang X, Shen W, Park S, Collings C, Feng A, Smith SJ, Walton JD, Ding S-Y (2018) Real-time imaging reveals that lytic polysaccharide monooxygenase promotes cellulase activity by increasing cellulose accessibility. Biotechnology for Biofuels 11: 11+. doi: 10.1186/s13068-018-1023-1 DOI Google Scholar	Deconstruction
2018	Yang Y, Benning C (2018) Functions of triacylglycerols during plant development and stress. Current Opinion in Biotechnology 49: 191-198+. doi: 10.1016/j.copbio.2017.09.003 DOI Google Scholar	Feedstocks
2018	Kim S-J, Zemelis-Durfee S, Jensen JK, Wilkerson CG, Keegstra K, Brandizzi F (2018) In the grass species Brachypodium distachyon, the production of mixed-linkage (1,3;1,4)-β-glucan (MLG) occurs in the Golgi apparatus. The Plant Journal 93: 1062-1075+. doi: 10.1111/tpj.13830 DOI Google Scholar	Feedstocks