Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Angelos, E., Ko, D.K., Zemelis-Durfee, S. & Brandizzi, F. "Relevance of the unfolded protein response to spaceflight-induced transcriptional reprogramming in Arabidopsis." Astrobiology DOI: 10.1089/ast.2020.2313,3, (2021). [DOI: 10.1089/ast.2020.2313] DOI Google Scholar	Feedstocks
2021	Fang, Z., Flynn, M.G., Jackson, J.E. & Hegg, E.L. "Thio-assisted reductive electrolytic cleavage of lignin β-O-4 models and authentic lignin." Green Chemistry DOI: 10.1039/D0GC03597A, (2021). [DOI: 10.1039/D0GC03597A] DOI Google Scholar
2021	Haase, M.A.B., Kominek, J., Opulente, D.A., Shen, X.-X., Labella, A.L., Zhou, X., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., et al. "Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo’s law of irreversible loss." Genetics DOI: 10.1093/genetics/iyaa012, (2021). [DOI: 10.1093/genetics/iyaa012] DOI Google Scholar
2021	Kasanke, C.P., Zhao, Q., Bell, S., Thompson, A.M. & Hofmockel, K.S. "Can switchgrass increase carbon accrual in marginal soils? The importance of site selection." Global Change Biology – Bioenergy 13,2, 320-335+ (2021). [DOI: 10.1111/gcbb.12777] DOI Google Scholar	Sustainability
2021	Ko, D.K. & Brandizzi, F. "A temporal hierarchy underpins the transcription factor-DNA interactome of the maize UPR." The Plant Journal 105,1, 254-270+ (2021). [DOI: 10.1111/tpj.15044] DOI Google Scholar
2021	Li, H., Young, S.E., Poulsen, M. & Currie, C.R. "Symbiont-mediated digestion of plant biomass in fungus-farming insects." Annual Review of Entomology 66, 297-316+ (2021). [DOI: 10.1146/annurev-ento-040920-061140] DOI Google Scholar
2021	Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal DOI: 10.1111/tpj.15108, (2021). [DOI: 10.1111/tpj.15108] DOI Google Scholar
2021	Ostrom, P.H., DeCamp, S., Gandhi, H., Haslun, J. & Ostrom, N.E. "The influence of tillage and fertilizer on the flux and source of nitrous oxide with reference to atmospheric variation using laser spectroscopy." Biogeochemistry DOI: 10.1007/s10533-020-00742-y, (2021). [DOI: 10.1007/s10533-020-00742-y] DOI Google Scholar
2021	Yu, K.M.J., McKinley, B., Rooney, W.L. & Mullet, J.E. "High planting density induces the expression of GA3-oxidase in leaves and GA mediated stem elongation in bioenergy sorghum." Scientific Reports 11,1, 46+ (2021). [DOI: 10.1038/s41598-020-79975-8] DOI Google Scholar
2020	Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73-89+ (2020). [DOI: 10.1093/treephys/tpz020] DOI Google Scholar
2020	Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810-822+ (2020). [DOI: 10.1002/hyp.13630] DOI Google Scholar	Sustainability
2020	Abu-Omar, M.M., Barta, K., Beckham, G.T., Luterbacher, J.S., Ralph, J., Rinaldi, R., Román-Leshkov, Y., Samec, J.S.M., Sels, B.F. & Wang, F. "Guidelines for performing lignin-first biorefining." Energy & Environmental Science DOI: 10.1039/D0EE02870C, (2020). [DOI: 10.1039/D0EE02870C] DOI Google Scholar
2020	Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488-1498+ (2020). [DOI: 10.1111/ele.13576] DOI Google Scholar	Sustainability
2020	Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, (2020). [DOI: 10.1093/nargab/lqaa049] DOI Google Scholar
2020	Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332] DOI Google Scholar
2020	Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005] DOI Google Scholar
2020	Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20] DOI Google Scholar
2020	Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20] DOI Google Scholar
2020	Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130] DOI Google Scholar
2020	Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117] DOI Google Scholar	Sustainability
2020	Benucci, G.M.N., Rennick, B. & Bonito, G. "Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?" PLOS ONE 15,8, (2020). [DOI: 10.1371/journal.pone.0237368] DOI Google Scholar	Sustainability
2020	Bhandari, D.D. & Brandizzi, F. "Plant endomembranes and cytoskeleton: moving targets in immunity." Current Opinion in Plant Biology 58, 8-16+ (2020). [DOI: 10.1016/j.pbi.2020.09.003] DOI Google Scholar	Feedstocks
2020	Bilyera, N., Kuzyakova, I., Guber, A., Razavi, B.S. & Kuzyakov, Y. "How “hot” are hotspots: statistically localizing the high-activity areas on soil and rhizosphere images." Rhizosphere 16, 100259+ (2020). [DOI: 10.1016/j.rhisph.2020.100259] DOI Google Scholar
2020	Bowsher, A.W., Benucci, G.M.N., Bonito, G. & Shade, A. "Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria." Phytobiomes Journal DOI: 10.1094/PBIOMES-07-20-0051-R, (2020). [DOI: 10.1094/pbiomes-07-20-0051-r] DOI Google Scholar	Sustainability
2020	Chang, H., Bajaj, I., Huber, G.W., Maravelias, C.T. & Dumesic, J.A. "Catalytic strategy for conversion of fructose to organic dyes, polymers, and liquid fuels." Green Chemistry 22, 5285-5295+ (2020). [DOI: 10.1039/D0GC01576H] DOI Google Scholar

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