Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2024
Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8]
2024
Bhandari, D.D. & Brandizzi, F. "Logistics of defense: the contribution of endomembranes to plant innate immunity." Journal of Cell Biology 223,6, (2024). [DOI: 10.1083/jcb.202307066]
2024
Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 21-34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2]
2024
Bibik, J.D. & Hamberger, B. "Plant engineering to enable platforms for sustainable bioproduction of terpenoids." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 3-20+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_1]
2024
Bibik, J.D., Sahu, A., Kim, B., Unda, F., Andersen, T.B., Mansfield, S.D., Maravelias, C.T., Sharkey, T.D. & Hamberger, B.R. "Engineered poplar for bioproduction of the triterpene squalene." Plant Biotechnology Journal DOI: 10.1111/pbi.14345, (2024). [DOI: 10.1111/pbi.14345]
2024
Bourmaud, C.L., Bertella, S., Rico, A.B., Karlen, S.D., Ralph, J. & Luterbacher, J. "Quantification of native lignin structural features with gel-phase 2D-HSQC0 reveals lignin structural changes during extraction." Angewandte Chemie International Edition DOI: 10.1002/anie.202404442, (2024). [DOI: 10.1002/anie.202404442]
2024
Chandrasekar, M., Collins, J.L., Habibi, S. & Ong, R.G. "Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass." Bioresource Technology 393, 129989+ (2024). [DOI: 10.1016/j.biortech.2023.129989]
2024
Chavez, C.M., Groenewald, M., Hulfachor, A.B., Kpurubu, G., Huerta, R., Hittinger, C.T. & Rokas, A. "The cell morphological diversity of Saccharomycotina yeasts." FEMS Yeast Research 24, (2024). [DOI: 10.1093/femsyr/foad055]
2024
Chen, J., U, K.T.P., North, M. & Franklin, J.F. "The contributions of microclimatic information in advancing ecosystem science." Agricultural and Forest Meteorology 355, 110105+ (2024). [DOI: 10.1016/j.agrformet.2024.110105]
2024
Chipkar, S., Kahmark, K., Bohm, S., Hussain, M.Z., Joshi, L., Krieg, K.M., Aguado, J., Cassidy, J., Lozano, P., Garland, K., et al. "High temperatures and low soil moisture synergistically reduce switchgrass yields from marginal field sites and inhibit fermentation." Global Change Biology – Bioenergy 16,2, (2024). [DOI: 10.1111/gcbb.13119]
2024
Cui, Y., Weeda, E.P., Omolabake, S., Karlen, S.D., Holland, C.M. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass using a Co-N-P-C catalyst and one-step isolation of aromatic monomers via centrifugal partition chromatography." ACS Sustainable Chemistry & Engineering 12,26, 9795–9804+ (2024). [DOI: 10.1021/acssuschemeng.4c02120]
2024
David, K.T., Harrison, M.-C., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Pennell, M., Hittinger, C.T., et al. "Saccharomycotina yeasts defy long-standing macroecological patterns." Proceedings of the National Academy of Sciences of the United States of America 121,10, (2024). [DOI: 10.1073/pnas.2316031121]
2024
Doron, L., Raval, D. & Kerfeld, C.A. "Towards using bacterial microcompartments as a platform for spatial metabolic engineering in the industrially important and metabolically versatile Zymomonas mobilis." Frontiers in Bioengineering and Biotechnology 12, 1344260+ (2024). [DOI: 10.3389/fbioe.2024.1344260]
2024
Durant, C., Bhasin, A., Juenger, T.E. & Heckman, R.W. "Genetically correlated leaf tensile and morphological traits are driven by growing season length in a widespread perennial grass." American Journal of Botany 111,5, (2024). [DOI: 10.1002/ajb2.16349]
2024
Fu, J., McKinley, B., James, B., Chrisler, W., Markillie, L.M., Gaffrey, M.J., Mitchell, H.D., Riaz, M.R., Marcial, B., Orr, G., et al. "Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems." The Plant Journal DOI: 10.1111/tpj.16690, (2024). [DOI: 10.1111/tpj.16690]
2024
Geissler, C.H., Ryu, J. & Maravelias, C.T. "The future of biofuels in the United States transportation sector." Renewable and Sustainable Energy Reviews 192, 114276+ (2024). [DOI: 10.1016/j.rser.2023.114276]
2024
Goncalves, C., Hittinger, C.T. & Rokas, A. "Horizontal gene transfer in fungi and its ecological importance." in Fungal Associations. vol. 9 59-81+ (Springer, 2024). [DOI: 10.1007/978-3-031-41648-4_3]
2024
Grady, K.L. & Shade, A. "Bacterial isolate collection from switchgrass rhizosphere." Microbiology Resource Announcements DOI: 10.1128/mra.01133-23, (2024). [DOI: 10.1128/mra.01133-23]
2024
Guber, A. & Kravchenko, A. "2-D soil zymography: accounting for the spatial variation of pH." Rhizosphere 29, 100862+ (2024). [DOI: 10.1016/j.rhisph.2024.100862]
2024
Haan, N.L., Helms, J.A. & Landis, D. "Bioenergy cropping systems shape ant community composition and functional roles." Frontiers in Conservation Science 4, 1283225+ (2024). [DOI: 10.3389/fcosc.2023.1283225]
Sustainability
2024
Hao, Y., Lu, F., Pyo, S.-W., Kim, M.-H., Ko, J.-H., Yan, X., Ralph, J. & Li, Q. "PagMYB128 regulates secondary cell wall formation by direct activation of cell wall biosynthetic genes during wood formation in poplar." Journal of Integrative Plant Biology DOI: 10.1111/jipb.13717, (2024). [DOI: 10.1111/jipb.13717]
2024
Harrison, M.-C., Ubbelohde, E.J., Labella, A.L., Opulente, D.A., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Hittinger, C.T. & Rokas, A. "Machine learning enables identification of an alternative yeast galactose utilization pathway." Proceedings of the National Academy of Sciences of the United States of America 121,18, (2024). [DOI: 10.1073/pnas.2315314121]
2024
Hoang, D.Q., Wilson, L.R., Scheftgen, A.J., Suen, G. & Currie, C.R. "Disturbance-diversity relationships of microbial communities change based on growth substrate." mSystems 9,2, (2024). [DOI: 10.1128/msystems.00887-23]
2024
Hurt, A., Bibik, J.D., Martinez-Gomez, N.C. & Hamberger, B. "Engineering terpene production pathways in Methylobacterium extorquens AM1." Microorganisms 12,3, 500+ (2024). [DOI: 10.3390/microorganisms12030500]
2024
Jiao, Y., Nigam, D., Barry, K., Daum, C., Yoshinaga, Y., Lipzen, A., Khan, A., Parasa, S.-P., Wei, S., Lu, Z., et al. "A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes." The Plant Journal 117,5, 1543-1557+ (2024). [DOI: 10.1111/tpj.16582]