Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2019	Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, et al (2019) RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal. doi: 10.1111/pbi.13001 DOI Google Scholar	Feedstocks
2019	Mokomele T, Sousa L da C, Balan V, van Rensburg E, Dale BE, Görgens JF (2019) Incorporating anaerobic co-digestion of steam exploded or ammonia fiber expansion pretreated sugarcane residues with manure into a sugarcane-based bioenergy-livestock nexus. Bioresource Technology 272: 326-336+. doi: 10.1016/j.biortech.2018.10.049 DOI Google Scholar	Deconstruction
2019	Banerjee A, Arnesen JA, Moser D, Motsa BB, Johnson SR, Hamberger B (2019) Engineering modular diterpene biosynthetic pathways in Physcomitrella patens. Planta 249: 221-233+. doi: 10.1007/s00425-018-3053-0 DOI Google Scholar	Feedstocks
2019	Kontur WS, Olmsted CN, Yusko LM, Niles AV, Walters KA, Beebe ET, Meulen KAV, Karlen SD, Gall DL, Noguera DR, et al (2019) A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β(R)-aryl ether bond reveals the diversity of bacterial β-etherases. Journal of Biological Chemistry 294: 1877-1890+. doi: 10.1074/jbc.RA118.006548 DOI Google Scholar	Conversion
2019	Szymanski LM, Sanford GR, Heckman KA, Jackson RD, Marín-Spiotta E (2019) Conversion to bioenergy crops alters the amount and age of microbially-respired soil carbon. Soil Biology and Biochemistry 128: 35-44+. doi: 10.1016/j.soilbio.2018.08.025 DOI Google Scholar	Sustainability
2019	Mahon EL, Mansfield SD (2019) Tailor-made trees: engineering lignin for ease of processing and tomorrow’s bioeconomy. Current Opinion in Biotechnology 56: 147-155+. doi: 10.1016/j.copbio.2018.10.014 DOI Google Scholar
2019	Haan NL, Landis DA (2019) Grassland disturbance increases monarch butterfly oviposition and decreases arthropod predator abundance. Biological Conservation 233: 185-192+. doi: 10.1016/j.biocon.2019.03.007 DOI Google Scholar	Sustainability
2019	Oyarce P, De Meester B, Fonseca F, de Vries L, Goeminne G, Pallidis A, De Rycke R, Tsuji Y, Li Y, Van den Bosch S, et al (2019) Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing. Nature Plants 5: 225-237+. doi: 10.1038/s41477-018-0350-3 DOI Google Scholar	Feedstocks
2019	Kellock M, Maaheimo H, Marjamaa K, Rahikainen J, Zhang H, -Mantila H, Ralph J, Tamminen T, Felby C, Kruus K (2019) Effect of hydrothermal pretreatment severity on lignin inhibition in enzymatic hydrolysis. Bioresource Technology 280: 303-312+. doi: 10.1016/j.biortech.2019.02.051 DOI Google Scholar
2019	Roley SS, Xue C, Hamilton SK, Tiedje JM, Robertson P (2019) Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.). Soil Biololgy and Biochemistry 129: 90-98+. doi: 10.1016/j.soilbio.2018.11.006 DOI Google Scholar	Sustainability
2019	Tobimatsu Y, Takano T, Umezawa T, Ralph J (2019) Solution-state multidimensional NMR of lignins: approaches and applications. In Lignin: Biosynthesis, Functions and Economic Significance. Nova Science Publishers, Inc., Hauppauge, New York, USA, pp 79-110+ Google Scholar	Feedstocks
2019	Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D (2019) Systems-level analysis of oxygen exposure in Zymomonas mobilis: implications for isoprenoid production. mSystems. doi: 10.1128/mSystems.00284-18 DOI Google Scholar	Conversion
2019	Williams DL, Ong RG, Mullet JE, Hodge DB (2019) Integration of pretreatment with simultaneous counter-current extraction of energy sorghum for high-titer mixed sugar production. Frontiers in Energy Research 6: 133+. doi: 10.3389/fenrg.2018.00133 DOI Google Scholar	Feedstocks, Deconstruction
2019	Moore BM, Wang P, Fan P, Leong B, Schenck CA, Lloyd JP, Lehti-Shiu MD, Last RL, Pichersky E, Shiu S-H (2019) Robust predictions of specialized metabolism genes through machine learning. Proceedings of the National Acadamy of Sciences of the United States of America 116: 2344-2353+. doi: 10.1073/pnas.1817074116 DOI Google Scholar
2019	Kim S, Dale BE, Jin M, Thelen KD, Zhang X, Meier P, Reddy AD, Jones CD, Izaurralde C, Balan V, et al (2019) Integration in a depot-based decentralized biorefinery system: corn stover-based cellulosic biofuel. Global Change Biology – Bioenergy. doi: 10.1111/gcbb.12613 DOI Google Scholar	Sustainability
2019	Dulys-Nusbaum E, Klammer SSH, Swinton SM (2019) How willing are different types of landowner to supply hardwood timber residues for bioenergy? Biomass and Bioenergy 122: 45-52+. doi: 10.1016/j.biombioe.2019.01.026 DOI Google Scholar	Sustainability
2019	Panchy NL, Azodi CB, Winship EF, O’Malley RC, Shiu S-H (2019) Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. BMC Evolutionary Biology 19: 77+. doi: 10.1186/s12862-019-1398-z DOI Google Scholar
2019	Duncan DS, Oates LG, Gelfand I, Millar N, Robertson P, Jackson RD (2019) Environmental factors function as constraints on soil nitrous oxide fluxes in bioenergy feedstock cropping systems. Global Change Biology – Bioenergy 11: 416-426+. doi: 10.1111/gcbb.12572 DOI Google Scholar	Sustainability
2019	Kim S, Dale BE, Zhang X, Jones CD, Reddy AD, Izaurralde RC (2019) The Renewable Fuel Standard may limit overall greenhouse gas savings by corn ttover-based cellulosic biofuels in the U.S. Midwest: effects of the regulatory approach on projected emissions. Environmental Science & Technology 53: 2288-2294+. doi: 10.1021/acs.est.8b02808 DOI Google Scholar	Sustainability
2019	Sadre R, Kuo P, Chen J, Yang Y, Banerjee A, Benning C, Hamberger B (2019) Cytosolic lipid droplets as engineered organelles for production and accumulation of terpenoid biomaterials in leaves. Nature Communications 10: 853+. doi: 10.1038/s41467-019-08515-4 DOI Google Scholar	Feedstocks
2019	Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R (2019) OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate. Metabolic Engineering 52: 324-340+. doi: 10.1016/j.ymben.2018.12.008 DOI Google Scholar	Conversion
2019	Myers KS, Riley NM, MacGilvray ME, Sato TK, McGee M, Heilberger J, Coon JJ, Gasch AP (2019) Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. PLOS Genetics. doi: 10.1371/journal.pgen.1008037 DOI Google Scholar	Conversion
2019	Cadez N, Bellora N, Ulloa R, Hittinger CT, Libkind D (2019) Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. PLOS ONE. doi: 10.1371/journal.pone.0210792 DOI Google Scholar	Conversion
2019	Perez JM, Kontur WS, Alherech M, Coplien J, Karlen SD, Stahl SS, Donohue TJ, Noguera DR (2019) Funneling aromatic products of chemically depolymerized lignin into 2-pyrone-4-6- dicarboxylic acid with Novosphingobium aromaticivorans. Green Chemistry 21: 1340-1350+. doi: 10.1039/c8gc03504k DOI Google Scholar	Conversion
2019	Li XC, Peris D, Hittinger CT, Sia EA, Fay JC (2019) Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast. Science Advances. doi: 10.1126/sciadv.aav1848 DOI Google Scholar	Conversion