Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2023
Casler, M.D., Lee, D.K., Mitchell, R.B., Moore, K.J., Adler, P.R., Sulc, M., Johnson, K.D., Kallenbach, R.L., Boe, A.R., Mathison, R.D., et al. "Biomass quality responses to selection for increased biomass yield in perennial energy grasses." BioEnergy Research 16,2, 877–885+ (2023). [DOI: 10.1007/s12155-022-10513-2]
Sustainability
2023
Dong, X., Mayes, H.B., Morreel, K., Katahira, R., Li, Y., Ralph, J., Black, B.A. & Beckham, G.T. "Energy-resolved mass spectrometry as a tool for identification of lignin depolymerization products." ChemSusChem 16,1, (2023). [DOI: 10.1002/cssc.202201441]
2023
Hellinger, J., Kim, H., Ralph, J. & Karlen, S.D. "p-Coumaroylation of lignin occurs outside of commelinid monocots in the eudicot genus Morus (mulberry)." Plant Physiology 191,2, 854–861+ (2023). [DOI: 10.1093/plphys/kiac485]
2023
Ko, D.K. & Brandizzi, F. "Coexpression network construction and visualization from transcriptomes underlying ER stress responses." in Plant Proteostasis. Methods in Molecular Biology. vol. 2581 385-401+ (Humana, 2023). [DOI: 10.1007/978-1-0716-2784-6_27]
2023
Mottiar, Y., Karlen, S.D., Goacher, R.E., Ralph, J. & Mansfield, S.D. "Metabolic engineering of p-hydroxybenzoate in poplar lignin." Plant Biotechnology Journal 21,1, 176-188+ (2023). [DOI: 10.1111/pbi.13935]
2023
Mottiar, Y., Smith, R.A., Karlen, S.D., Ralph, J. & Mansfield, S.D. "Evolution of p-coumaroylated lignin in eudicots provides new tools for cell wall engineering." New Phytologist 237,1, 251-264+ (2023). [DOI: 10.1111/nph.18518]
2023
Alberge, F., Lakey, B.D., Schaub, R.E., Dohnalkova, A.C., Lemmer, K.C., Dillard, J.P., Noguera, D.R. & Donohue, T.J. "A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales." mBio 14,4, (2023). [DOI: 10.1128/mbio.01203-23]
2023
Barros, K.O., Alvarenga, F.B.M., Magni, G., Souza, G.F.L., Abegg, M.A., Palladino, F., da Silva, S.S., Rodrigues, R.C.L.B., Sato, T.K., Hittinger, C.T., et al. "The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species." Yeast 40,2, 84-101+ (2023). [DOI: 10.1002/yea.3837]
2023
Basyal, B. & Walker, B.J. "Arbuscular mycorrhizal fungi enhance yield and photosynthesis of switchgrass (Panicum virgatum L.) under extreme drought and alters the biomass composition of the host plant." Biomass and Bioenergy 177, 106936+ (2023). [DOI: 10.1016/j.biombioe.2023.106936]
2023
Bell-Dereske, L.P., Benucci, G.M.N., da Costa, P.B., Bonito, G., Friesen, M.L., Tiemann, L.K. & Evans, S.E. "Regional biogeography versus intra-annual dynamics of the root and soil microbiome." Environmental Microbiome 18,1, 50+ (2023). [DOI: 10.1186/s40793-023-00504-x]
Sustainability
2023
Benucci, G.M.N., Toosi, E.R., Yang, F., Marsh, T.L., Bonito, G.M. & Kravchenko, A. "The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content." Frontiers in Microbiology 14, 1172862+ (2023). [DOI: 10.3389/fmicb.2023.1172862]
2023
Bhandari, D.D., Ko, D.K., Kim, S.-J., Nomura, K., He, S.Y. & Brandizzi, F. "Defense against phytopathogens relies on efficient antimicrobial protein secretion mediated by the microtubule-binding protein TGNap1." Nature Communications 14,1, 6357+ (2023). [DOI: 10.1038/s41467-023-41807-4]
2023
Brouckaert, M., Peng, M., Hofer, R., Houari, L.E., Darrah, C., Storme, V., Saeys, Y., Vanholme, R., Goeminne, G., Timokhin, V.I., et al. "QT-GWAS: a novel method for unveiling biosynthetic loci affecting qualitative metabolic traits." Molecular Plant 16,7, (2023). [DOI: 10.1016/j.molp.2023.06.004]
2023
Bryson, A.E., Lanier, E.R., Lau, K.H., Hamilton, J.P., Vaillancourt, B., Mathieu, D., Yocca, A.E., Miller, G.P., Edger, P.P., Buell, R., et al. "Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory." Nature Communications 14,1, 343+ (2023). [DOI: 10.1038/s41467-023-35845-1]
2023
Casler, M.D. & Lee, D.K. "Registration of ‘Cedar Creek’ switchgrass." Journal of Plant Registrations 17,3, 483-487+ (2023). [DOI: 10.1002/plr2.20294]
Feedstocks
2023
Chaudhury, D., Torkelson, E.R., Meyers, K.A., Acheson, J.F., Landucci, L.M., Pu, Y., Sun, Z., Tonelli, M., Bingman, C.A., Smith, R.A., et al. "Rapid biocatalytic synthesis of aromatic acid CoA thioesters utilizing microbial aromatic acid CoA ligases." ChemBioChem 24,9, (2023). [DOI: 10.1002/cbic.202300001]
2023
Chen, M., Li, Y., Lu, F., Luterbacher, J.S. & Ralph, J. "Lignin hydrogenolysis: phenolic monomers from lignin and associated phenolates across plant clades." ACS Sustainable Chemistry & Engineering 11,27, 10001-10017+ (2023). [DOI: 10.1021/acssuschemeng.3c01320]
2023
Cheng, F., Liu, S., Karlen, S.D., Kim, H., Lu, F., Ralph, J., Ramos, L.M.V., Huber, G.W. & Dumesic, J.A. "Poplar lignin structural changes during extraction in γ-valerolactone (GVL)." Green Chemistry 25, 336-347+ (2023). [DOI: 10.1039/D2GC03446H]
2023
Chou, M.-Y., Andersen, T.B., Llontop, M.E.M., Beculheimer, N., Sow, A., Moreno, N., Shade, A., Hamberger, B. & Bonito, G. "Terpenes modulate bacterial and fungal growth and sorghum rhizobiome communities." Microbiology Spectrum DOI: 10.1128/spectrum.01332-23, (2023). [DOI: 10.1128/spectrum.01332-23]
2023
Donohue, T.J. "Producing transportation fuels, electrical power, and chemicals in a circular bioeconomy." The Bridge: Linking Engineering and Society 53,2, 41-46+ (2023). [DOI: N/A]
2023
Edwards, J.A., Saran, U.B., Bonnette, J., MacQueen, A., Yin, J., Nguyen, T.U., Schmutz, J., Grimwood, J., Pennacchio, L.A., Daum, C., et al. "Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range." Current Biology 33,10, 1926-1938+ (2023). [DOI: 10.1016/j.cub.2023.03.078]
2023
Ellis, N.A., Myers, K.S., Tung, J., Ward, A.D., Johnston, K., Bonnington, K.E., Donohue, T.J. & Machner, M.P. "A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genes." eLife 12, (2023). [DOI: 10.7554/eLife.86903.1]
2023
Fowler, A.F., Basso, B., Millar, N. & Brinton, W.F. "A simple soil mass correction for a more accurate determination of soil carbon stock changes." Scientific Reports 13,1, 2242+ (2023). [DOI: 10.1038/s41598-023-29289-2]
2023
Fu, X., Gregory, L.M., Weise, S.E. & Walker, B.J. "Integrated flux and pool size analysis in plant central metabolism reveals unique roles of glycine and serine during photorespiration." Nature Plants 9, 169–178+ (2023). [DOI: 10.1038/s41477-022-01294-9]
2023
Gilcher, E.B., Kuch, N., Del Mundo, J.T., Ausman, S.F., Santiago-Martinez, L., Clewett, C.F.M., Gomez, E.W., Gomez, E.D., Root, T.W., Fox, B.G., et al. "Evolution of the cellulose microfibril through gamma-valerolactone-assisted co-solvent and enzymatic hydrolysis." ACS Sustainable Chemistry & Engineering 11, 3270-3283+ (2023). [DOI: 10.1021/acssuschemeng.2c06030]