Publications

Miesel, J.R., Renz, M.J., Doll, J.E. & Jackson, R.D. "Effectiveness of weed management methods in establishment of switchgrass and a native species mixture for biofuels in Wisconsin." Biomass and Bioenergy 36, 121–131+ (2012). [DOI: 10.1016/j.biombioe.2011.10.018]

Mitchell, J.C., Rutkoski, T.J., Bannen, R.M. & Phillips, G.N., Jr. Combined computational and experimental approaches to sequence-based design of protein thermal stability Thermostable Proteins: Structural Stability and Design. 105–116+ (CRC Press, 2012).

Muttoni, G., Johnson, J.M., Santoro, N., Rhiner, C.J., von Mogel, K.J.H., Kaeppler, S.M. & de Leon, N. "A high-throughput core sampling device for the evaluation of maize stalk composition." Biotechnology for Biofuels 5,1, 27+ (2012). [DOI: 10.1186/1754-6834-5-27]

Nadakuduti, S.S., Pollard, M., Kosma, D.K., Allen, C., Ohlrogge, J.B. & Barry, C.S. "Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato." Plant Physiology 159,3, 945–960+ (2012). [DOI: 10.1104/pp.112.198374]

Nikièma, P., Rothstein, D.E. & Miller, R.O. "Initial greenhouse gas emissions and nitrogen leaching losses associated with converting pastureland to short-rotation woody bioenergy crops in northern Michigan, USA." Biomass and Bioenergy 39, 413–426+ (2012). [DOI: 10.1016/j.biombioe.2012.01.037]

O’Neill, B.J., Gurbuz, E.I. & Dumesic, J.A. "Reaction kinetics studies of the conversions of formic acid and butyl formate over carbon-supported palladium in the liquid phase." Journal of Catalysis 290, 193–201+ (2012). [DOI: 10.1016/j.jcat.2012.03.014,]

Pell, J., Hintze, A., Canino-Koning, R., Howe, A., Tiedje, J.M. & Brown, T. "Scaling metagenome sequence assembly with probabilistic de Bruijn graphs." Proceedings of the National Academy of Sciences of the United States of America 109,33, 13272–13277+ (2012). [DOI: 10.1073/pnas.1121464109]

Poskar, H., Huege, J., Krach, C., Franke, M., Shachar-Hill, Y. & Junker, B. "iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis." BMC Bioinformatics 13,1, 295+ (2012). [DOI: 10.1186/1471-2105-13-295]

Ralph, J., Akiyama, T., Coleman, D.C. & Mansfield, S.D. "Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar." BioEnergy Research 5,4, 1009–1019+ (2012). [DOI: 10.1007/s12155-012-9218-y]

Reed, J.L. "Shrinking the metabolic solution space using experimental datasets." PLOS Computational Biology 8,8, e1002662+ (2012). [DOI: 10.1371/Journal.Pcbi.1002662]

Robertson, B., Porter, C., Landis, D. & Schemske, D. "Agroenergy crops influence the diversity, biomass, and guild structure of terrestrial arthropod communities." BioEnergy Research 5, 179–188+ (2012). [DOI: 10.1007/s12155-011-9161-3]

Robertson, B.A., Rice, R.A., Sillet, T.S., Babcock, B.A., Landis, D.A., Ribic, C.A., Herkert, J.R., Fletcher, R.J., Fontaine, J.J. & Schemske, D.J. "Are agrofuels a threat or opportunity for grassland birds in the United States?" The Condor 114,4, 679–688+ (2012). [DOI: 10.1525/cond.2012.110136]

Rothamer, D.A. & Jennings, J.H. "Study of the knocking propensity of 2,5-dimethylfuran–gasoline and ethanol–gasoline blends." Fuel 98, 203–212+ (2012). [DOI: 10.1016/j.fuel.2012.03.049]

Ruiz-May, E., Kim, S.-J., Brandizzi, F. & Rose, J.K. "The secreted plant N-glycoproteome and associated secretory pathways." Frontiers in Plant Science 3, 117+ (2012). [DOI: 10.3389/fpls.2012.00117]

Sanford, G.R., Posner, J., Jackson, R.D., Kucharik, C., Hedtcke, J. & Lin, T.-L. "Soil carbon lost from Mollisols of the North Central U.S.A. with 20 years of agricultural best management practices." Agriculture, Ecosystems and Environment 162, 68–76+ (2012). [DOI: 10.1016/j.agee.2012.08.011]

Schwalbach, M.S., Keating, D.H., Tremaine, M., Marner, W.D., Zhang, Y.H., Bothfeld, W.H., Higbee, A.J., Grass, J.A., Cotten, C., Reed, J.L., et al. "Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen." Applied and Environmental Microbiology 78,9, 3442–57+ (2012). [DOI: 10.1128/​AEM.07329-11]

Sekhon, R.S., Childs, K.L., Santoro, N., Foster, C.E., Buell, R., de Leon, N. & Kaeppler, S.M. "Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize." Plant Physiology 159, 1730–1744+ (2012). [DOI: 10.1104/pp.112.199224]

Sen, M., Alonso, D.M., Wettstein, S.G., Gurbuz, E.I., Henao, C.A., Dumesic, J.A. & Maravelias, C.T. "A sulfuric acid management strategy for the production of liquid hydrocarbon fuels via catalytic conversion of biomass-derived levulinic acid." Energy and Environmental Science 5,12, 9690–97+ (2012). [DOI: 10.1039/C2EE22526C]

Sen, M., Gurbuz, E.I., Wettstein, S.G., Alonso, D.M., Dumesic, J.A. & Maravelias, C.T. "Production of butene oligomers as transportation fuels using butene for esterification of levulinic acid from lignocellulosic biomass: process synthesis and technoeconomic evaluation." Green Chemistry 14,12, 3289–94+ (2012). [DOI: 10.1039/C2GC35881F]

Sen, M.S., Henao, C.A., Braden, D.J., Dumesic, J.A. & Maravelias, C.T. "Catalytic conversion of lignocellulosic biomass to fuels: process development and technoeconomic evaluation." Chemical Engineering Science 67,1, 57–67+ (2012). [DOI: 10.1016/j.ces.2011.07.022]

Sen, S.M., Binder, J.B., Raines, R.T. & Maravelias, C.T. "Conversion of biomass to sugars via ionic liquid hydrolysis: process synthesis and economic evaluation." Biofuels, Bioproducts and Biorefining 6,4, 444–452+ (2012). [DOI: 10.1002/bbb.1336]

Nair, S.S., Kang, S., Zhang, X., Miguez, F.E., Izaurralde, C., Post, W.M., Dietze, M.C., Lynd, L.R. & Wullschleger, S.D. "Bioenergy crop models: descriptions, data requirements, and future challenges." Global Change Biology – Bioenergy 4,6, 620–633+ (2012). [DOI: 10.1111/j.1757-1707.2012.01166.x]

Syswerda, S., Basso, B., Hamilton, S.K., Tausig, J. & Robertson, P. "Long-term nitrate loss along an agricultural intensity gradient in the Upper Midwest USA." Agriculture, Ecosystems & Environment 149,March 2012, 10–19+ (2012). [DOI: 10.1016/j.agee.2011.12.007]

Thelen, K.D., Gao, J., Hoben, J., Qian, L., Saffron, C. & Withers, K. "A spreadsheet-based model for teaching the agronomic, economic, and environmental aspects of bioenergy cropping systems." Computers and Electronics in Agriculture 85, 157–163+ (2012). [DOI: 10.1016/j.compag.2012.04.010]

Tjellstrom, H., Yang, Z., Allen, D.K. & Ohlrogge, J.B. "Rapid kinetic labeling of Arabidopsis cell suspension cultures: implications for models of lipid export from plastids." Plant Physiology 158,2, 601–11+ (2012). [DOI: 10.1104/pp.111.186122]