Publications

Xu, C., Liang, C., Wullschleger, S., Wilson, C. & McDowell, N. "Importance of feedback loops between soil inorganic nitrogen and microbial communities in the heterotrophic soil respiration response to global warming." Nature Reviews Microbiology 9,3, 222–222+ (2011). [DOI: 10.1038/nrmicro2439-c1]

Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 1. Catalyzed reactions with wood models and wood polymers." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 131–143+ (2011). [DOI: 10.1515/HF.2011.028]

Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 2. Non-catalyzed reactions with the wood cell wall." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 145–154+ (2011). [DOI: 10.1515/HF.2011.029]

Yelle, D.J., Wei, D., Ralph, J. & Hammel, K.E. "Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta." Environmental Microbiology 13,4, 1091–1100+ (2011). [DOI: 10.1111/j.1462-2920.2010.02417.x]

Youngquist, T., Lennen, R.M., Ranatunga, D.R., Bothfeld, W.H., Marner, W.D., II & Pfleger, B.F. "Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain." Biotechnology and Bioengineering 109,6, 1518–27+ (2011). [DOI: 10.1002/bit.24420]

Zalapa, J.E., Price, D.L., Kaeppler, S.M., Tobias, C.M., Okada, M. & Casler, M.D. "Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars." Theoretical and Applied Genetics 122,4, 805–17+ (2011). [DOI: 10.1007/s00122-010-1488-1]

Zenone, T., Chen, J., Deal, M.W., Wilske, B., Jasrotia, P., Xu, J., Bhardwaj, A.K., Hamilton, S.K. & Robertson, P. "CO2 fluxes of transitional bioenergy crops: effect of land conversion during the first year of cultivation." Global Change Biology – Bioenergy 3,5, 401–412+ (2011). [DOI: 10.1111/j.1757-1707.2011.01098.x]

Zhang, X., Izaurralde, C., Arnold, J.G., Sammons, N.B., Manowitz, D.H., Thomson, A.M. & Williams, J.R. "Comment on “Modeling miscanthus in the Soil and Water Assessment Tool (SWAT) to simulate its water quality effects as a bioenergy crop”." Environmental Science & Technology 45,14, 6211–6212+ (2011). [DOI: 10.1021/es201463x]

Zhang, X., Liang, F., Yu, B. & Zong, Z. "Explicitly integrating parameter, input and structure uncertainties into Bayesian Neural Networks for probabilistic hydrologic forecasting." Journal of Hydrology 409,3-4, 696–709+ (2011). [DOI: 10.1016/j.jhydrol.2011.09.002]

Zhang, Y., Zalapa, J., Jakubowski, A., Price, D., Acharya, A., Wei, Y., Brummer, E., Kaeppler, S. & Casler, M. "Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences." Genetica 139,7, 933–948+ (2011). [DOI: 10.1007/s10709-011-9597-6]

Zhang, Y., Zalapa, J., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E., Kaeppler, S.M. & Casler, M.D. "Natural hybrids and gene flow between upland and lowland switchgrass." Crop Science 51, 2626–2641+ (2011). [DOI: 10.2135/cropsci2011.02.0104]

Zhu, X. & Mitchell, J.C. "KFC2: a knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features." Proteins 79,9, 2671–83+ (2011). [DOI: 10.1002/prot.23094]

Zhu, Y. & Ralph, J. "Stereoselective synthesis of 1-O-β-feruloyl and 1-O-β-sinapoyl glucopyranoses." Tetrahedron Letters 52,29, 3729–3731+ (2011). [DOI: 10.1016/j.tetlet.2011.05.038]

Alonso, A.P., Dale, V.L. & Shachar-Hill, Y. "Understanding fatty acid synthesis in developing maize embryos using metabolic flux analysis." Metabolic Engineering 12,5, 488–497+ (2010). [DOI: 10.1016/j.ymben.2010.04.002]

Alonso, A.P., Piasecki, R.J., Wang, Y., LaClair, R.W. & Shachar-Hill, Y. "Quantifying the labeling and the levels of plant cell wall precursors using ion chromatography tandem mass spectrometry." Plant Physiology 153,3, 915–924+ (2010). [DOI: 10.1104/pp.110.155713]

Bals, B., Rogers, C., Jin, M., Balan, V. & Dale, B.E. "Evaluation of ammonia fiber expansion (AFEX) pretreatment for enzymatic hydrolysis of switchgrass harvested in different seasons and locations." Biotechnology for Biofuels 3,1, 11+ (2010). [DOI: 10.1186/1754-6834-3-1]

Banerjee, G., Car, S., Scott-Craig, J., Borrusch, M. & Walton, J. "Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations." Biotechnology for Biofuels 3, 22+ (2010). [DOI: 10.1186/1754-6834-3-22]

Banerjee, G., Car, S., Scott-Craig, J.S., Borrusch, M.S., Aslam, N. & Walton, J.D. "Synthetic enzyme mixtures for biomass deconstruction: production and optimization of a core set." Biotechnology and Bioengineering 106, 707–720+ (2010). [DOI: 10.1002/bit.22741]

Banerjee, G., Car, S., Scott-Craig, J.S., Borrusch, M.S., Bongers, M. & Walton, J.D. "Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass." Bioresource Technology 101,23, 9097–9105+ (2010). [DOI: 10.1016/j.biortech.2010.07.028]

Banerjee, G., Scott-Craig, J.S. & Walton, J.D. "Improving enzymes for biomass conversion: a basic research perspective." BioEnergy Research 3, 82–92+ (2010). [DOI: 10.1007/s12155-009-9067-5]

Barua, D., Kim, J. & Reed, J.L. "An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models." PLOS Computational Biology 6,10, e1000970+ (2010). [DOI: 10.1371/journal.pcbi.1000970]

Binder, J.B., Blank, J.J., Cefali, A.V. & Raines, R.T. "Synthesis of furfural from xylose and xylan." ChemSusChem 3,11, 1268–1272+ (2010). [DOI: 10.1002/cssc.201000181]

Binder, J.B., Cefali, A.V., Blank, J.J. & Raines, R.T. "Mechanistic insights on the conversion of sugars into 5-hydroxymethylfurfural." Energy and Environmental Science 3,6, 765–771+ (2010). [DOI: 10.1039/b923961h]

Binder, J.B. & Raines, R.T. "Fermentable sugars by chemical hydrolysis of biomass." Proceedings of the National Academy of Sciences of the United States of America 107, 4516–21+ (2010). [DOI: 10.1073/pnas.0912073107]

Bond, J.Q., Alonso, D.M., Wang, D., West, R.M. & Dumesic, J.A. "Integrated catalytic conversion of γ-valerolactone to liquid alkenes for transportation fuels." Science 327,5969, 1110–1114+ (2010). [DOI: 10.1126/science.1184362]