Publications

Smith, S.L., Thelen, K.D. & MacDonald, S.J. "Yield and quality analyses of bioenergy crops grown on a regulatory brownfield." Biomass and Bioenergy 49, 123–130+ (2013). [DOI: 10.1016/j.biombioe.2012.12.017]

Takasuka, T.E., Book, A.J., Lewin, G.R., Currie, C.R. & Fox, B.G. "Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces." Scientific Reports 3, 1030+ (2013). [DOI: 10.1038/srep01030]

Tjellstrom, H., Strawsine, M., Silva, J., Cahoon, E.B. & Ohlrogge, J.B. "Disruption of plastid acyl:acyl carrier protein synthetases increases medium chain fatty acid accumulation in seeds of transgenic Arabidopsis." FEBS Letters 587,7, 936–42+ (2013). [DOI: 10.1016/j.febslet.2013.02.021]

Tobimatsu, Y., Chen, F., Nakashima, J., Escamilla-Treviño L.L., Jackson, L., Dixion, R.A. & Ralph, J. "Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl lignins in plant seeds." The Plant Cell 25,7, 2587–2600+ (2013). [DOI: ​10.​1105/​tpc.​113.​113142]

Tobimatsu, Y., Wagner, A., Donaldson, L., Mitra, P., Niculeas, C., Dima, O., Kim, J.I., Anderson, N., Loque, D., Boerjan, W., et al. "Visualization of plant cell wall lignification using fluorescence-tagged monolignols." The Plant Journal 76,3, 357–366+ (2013). [DOI: 10.1111/tpj.12299]

Troncoso-Ponce, M.A., Cao, X., Yang, Z. & Ohlrogge, J.B. "Lipid turnover during senescence." Plant Science 205-206, 13–19+ (2013). [DOI: 10.1016/j.plantsci.2013.01.004]

Vanholme, B., Cesarino, I., Geert, G., Kim, H., Marroni, F., Van Acker, R., Vanholme, R., Morreel, K., Ivens, B., Pinosio, S., et al. "Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study." New Phytologist 198,3, 765–776+ (2013). [DOI: 10.1111/nph.12179]

Vanholme, R., Cesarino, I., Rataj, K., Xiao, Y., Sundin, L., Goeminne, G., Kim, H., Cross, J., Morreel, K., Araujo, P., et al. "Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis." Science 341, 1103–1106+ (2013). [DOI: 10.1126/science.1241602]

Vismeh, R., Humpula, J.F., Chundawat, S.P., Balan, V., Dale, B.E. & Jones, D. "Profiling of soluble neutral oligosaccharides from treated biomass using solid phase extraction and LC-TOF MS." Carbohydrate Polymers 94,2, 791–799+ (2013). [DOI: 10.1016/j.carbpol.2013.02.005]

Vismeh, R., Lu, F., Chundawat, S.P.S., Humpula, J.F., Azarpira, A., Balan, V., Dale, B.E., Ralph, J. & Jones, D. "Profiling of diferulates (plant cell wall cross-linkers) using ultrahigh-performance liquid chromatography-tandem mass spectrometry." Analyst 138,21, 6683–6692+ (2013). [DOI: 10.1039/C3AN36709F]

Wang, D., Hakim, S.H., Alonso, D.M. & Dumesic, J.A. "A highly selective route to linear alpha olefins from biomass-derived lactones and unsaturated acids." Chemical Communications 49,63, 7040–7042+ (2013). [DOI: 10.1039/c3cc43587c]

Wang, D., Osmundsen, C.M., Taarning, E. & Dumesic, J.A. "Selective production of aromatics from alkylfurans over solid acid catalysts." ChemCatChem 5,7, 2044–2050+ (2013). [DOI: 10.1002/cctc.201200757]

Wang, Q., Quensen, J.F., Fish, J.A., Lee, T.K., Sun, Y., Tiedje, J.M. & Cole, J.R. "Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool." mBio 4,5, e00592–13+ (2013). [DOI: 10.1128/mBio.00592-13]

Williams, C.L., Charland, P., Radloff, G., Sample, D. & Jackson, R.D. "Grass-shed: place and process for catalyzing perennial grass bioeconomies and their potential multiple benefits." Journal of Soil and Water Conservation 68,6, 141A-146A+ (2013). [DOI: 10.2489/jswc.68.6.141A]

Youngquist, T., Rose, J.P. & Pfleger, B.F. "Free fatty acid production in Escherichia coli under phosphate-limited conditions." Applied Microbiology and Biotechnology 97,11, 5149–59+ (2013). [DOI: 10.1007/s00253-013-4911-0]

Youngquist, T., Schumacher, M.H., Rose, J.P., Raines, T.C., Politz, M.C., Copeland, M.F. & Pfleger, B.F. "Production of medium chain length fatty alcohols from glucose in Escherichia coli." Metabolic Engineering 20, 177–186+ (2013). [DOI: 10.1016/j.ymben.2013.10.006]

Zenone, T., Gelfand, I., Chen, J., Hamilton, S.K. & Robertson, P. "From set-aside grassland to annual and perennial cellulosic biofuel crops: effects of land use change on carbon balance." Agricultural and Forest Meteorology 182-183, 1–12+ (2013). [DOI: 10.1016/j.agrformet.2013.07.015]

Zhang, X., Beeson, P., Link, R., Manowitz, D., Izaurralde, R.C., Sadeghi, A., Thomson, A.M., Sahajpal, R., Srinivasan, R. & Arnold, J.G. "Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python." Environmental Modelling & Software 46, 208–218+ (2013). [DOI: 10.1016/j.envsoft.2013.03.013]

Zhang, X., Izaurralde, C., Arnold, J.G., Williams, J.R. & Srinivasan, R. "Modifying the Soil and Water Assessment Tool to simulate cropland carbon flux: model development and initial evaluation." Science of the Total Environment 463-464, 810–822+ (2013). [DOI: 10.1016/j.scitotenv.2013.06.056]

Zhao, Q., Tobimatsu, Y., Zhou, R., Pattathil, S., Gallego-Giraldo, L., Fu, C., Jackson, L.A., Hahn, M.G., Kim, H., Ralph, J., et al. "Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula." Proceedings of the National Academy of Sciences of the United States of America 110,33, 13660–13665+ (2013). [DOI: 10.1073/pnas.1312234110]

Zhu, Y., Regner, M., Lu, F., Kim, H., Mohammadi, A., Pearson, T.J. & Ralph, J. "Preparation of monolignol γ-acetate, γ-p-hydroxycinnamate, and γ-p-hydroxybenzoate conjugates: selective deacylation of phenolic acetates with hydrazine acetate." RSC Advances 3,44, 21964–21971+ (2013). [DOI: 10.1039/C3RA42818D]

Agnew, D.E., Stevermer, A.K., Youngquist, T. & Pfleger, B.F. "Engineering Escherichia coli for production of C12-C14 polyhydroxyalkanoate from glucose." Metabolic Engineering 14,6, 705–13+ (2012). [DOI: 10.1016/j.ymben.2012.08.003]

Allen, D.K., Laclair, R.W., Ohlrogge, J.B. & Shachar-Hill, Y. "Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments." Plant, Cell & Environment 35, 1232–1244+ (2012). [DOI: 10.1111/j.1365-3040.2012.02485.x]

Alonso, D.M., Wettstein, S.G. & Dumesic, J.A. "Bimetallic catalysts for upgrading of biomass to fuels and chemicals." Chemical Society Reviews 41,24, 8075–8098+ (2012). [DOI: 10.1039/C2CS35188A]

Aylward, F.O., Burnum, K.E., Scott, J.J., Suen, G., Tringe, S.G., Adams, S.M., Barry, K.W., Nicora, C.D., Piehowski, P.D., Purvine, S.O., et al. "Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens." The International Society for Microbial Ecology Journal 6, 1688–7101+ (2012). [DOI: 10.1038/ismej.2012.10]