Publications

Chen, F., Tobimatsu, Y., Jackson, L., Ralph, J. & Dixon, R.A. "Novel seed coat lignins in the Cactaceae: structure, distribution and implications for the evolution of lignin diversity." The Plant Journal 73, 201–211+ (2013). [DOI: 10.1111/tpj.12012]

Jin, M., Gunawan, C., Balan, V., Yu, X. & Dale, B.E. "Continuous SSCF of AFEX™ pretreated corn stover for enhanced ethanol productivity using commercial enzymes and Saccharomyces cerevisiae 424A (LNH-ST)." Biotechnology and Bioengineering 110,5, 1302–1311+ (2013). [DOI: 10.1002/bit.24797]

Kang, S., Post, W., Wang, D., Nichols, J. & Bandaru, V. "Hierarchical marginal land assessment for land use planning." Land Use Policy 30,1, 106–113+ (2013). [DOI: 10.1016/j.landusepol.2012.03.002]

Kim, W.-C., Ko, J.-H., Kim, J.-Y., Kim, J.-M., Bae, H.-J. & Han, K.-H. "MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis." The Plant Journal 73,1, 26–36+ (2013). [DOI: 10.1111/j.1365-313X.2012.05124.x]

Lennen, R.M., Politz, M.G., Kruziki, M.A. & Pfleger, B.F. "Identification of transport proteins involved in free fatty acid efflux in Escherichia coli." Journal of Bacteriology 195,1, 135–44+ (2013). [DOI: 10.1128/JB.01477-12]

Meehan, T.D., Glassberg, J. & Gratton, C. "Butterfly community structure and landscape composition in agricultural landscapes of the central United States." Journal of Insect Conservation 17,2, 411–419+ (2013). [DOI: 10.1007/s10841-012-9523-y]

Paper, J.M., Scott-Craig, J.S., Cavalier, D.M., Faik, A., Wiemels, R.E., Borrusch, M.S., Bongers, M. & Walton, J.D. "α-Fucosidases with different substrate specificities from two species of Fusarium." Applied Microbiology and Biotechnology 97,12, 5371–5380+ (2013). [DOI: 10.1007/s00253-012-4423-3]

Robertson, B.A., Landis, D.A., Sillett, S., Loomis, E.R. & Rice, R.A. "Perennial agroenergy feedstocks as en route habitat for spring migratory birds." BioEnergy Research 6,1, 311–320+ (2013). [DOI: 10.1007/s12155-012-9258-3]

Robertson, P., Bruulsema, T., Gehl, R., Kanter, D., Mauzerall, D., Rotz, A. & Williams, C. "Nitrogen-climate interactions in US agriculture." Biogeochemistry 114, 41–70+ (2013). [DOI: 10.1007/s10533-012-9802-4]

Wagner, A., Tobimatsu, Y., Goeminne, G., Phillips, L., Flint, H., Steward, D., Torr, K., Donaldson, L., Boerjan, W. & Ralph, J. "Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements." Plant and Molecular Biology 81,1-2, 105–17+ (2013). [DOI: 10.1007/s11103-012-9985-z]

Wang, Y., Mortimer, J.C., Davis, J., Dupree, P. & Keegstra, K. "Identification of an additional protein involved in mannan biosynthesis." The Plant Journal 73,1, 105–117+ (2013). [DOI: 10.1111/tpj.12019]

Yelle, D.J., Kaparaju, P., Hunt, C.G., Hirth, K., Kim, H., Ralph, J. & Felby, C. "Two-dimensional NMR evidence for cleavage of lignin and xylan substituents in wheat straw through hydrothermal pretreatment and enzymatic hydrolysis." BioEnergy Research 6,1, 211–221+ (2013). [DOI: 10.1007/s12155-012-9247-6]

Adams, A.S., Aylward, F.O., Adams, S.M., Erbilgin, N., Aukema, B., Currie, C.R., Suen, G. & Raffa, K.F. "Mountain pine beetles colonizing historical and naïve host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism." Applied and Environmental Microbiology 79,11, 3468–3475+ (2013). [DOI: 10.1128/​AEM.00068-13]

Agnew, D.E. & Pfleger, B.F. "Synthetic biology strategies for synthesizing polyhydroxyalkanoates from unrelated carbon sources." Chemical Engineering Science 103, 58–67+ (2013). [DOI: 10.1016/j.ces.2012.12.023]

Alonso, D.M., Wettstein, S.G. & Dumesic, J.A. "Gamma-valerolactone, a sustainable platform molecule derived from lignocellulosic biomass." Green Chemistry 15,3, 584+ (2013). [DOI: 10.1039/c3gc37065h]

Asbjornsen, H., Hernandez-Santana, V., Liebman, M., Bayala, J., Chen, J., Helmers, M., Ong, C. & Schulte, L. "Targeting perennial vegetation in agricultural landscapes for enhancing ecosystem services." Renewable Agriculture and Food Systems 29,2, 101–125+ (2013). [DOI: 10.1017/S1742170512000385]

Aylward, F.O., Burnum, K.E., Tringe, S.G., Teiling, C., Tremmel, D.M., Moeller, J., Scott, J.J., Barry, K.W., Nicora, C.D., Piehowski, P.D., et al. "Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens." Applied and Environmental Microbiology 79,12, 3770–3778+ (2013). [DOI: 10.1128/AEM.03833-12]

Aylward, F.O., McDonald, B.R., Adams, S.M., Valenzuela, A., Schmidt, R.A., Goodwin, L.A., Woyke, T., Currie, C.R., Suen, G. & Poulsen, M. "Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities." Applied and Environmental Microbiology 79,12, 3724–3733+ (2013). [DOI: 10.1128/AEM.00518-13]

Aylward, F.O., Tremmel, D.M., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., Huntemann, M., et al. "Complete genome of Enterobacteriaceae bacterium strain FGI 57, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,1, e00238–12+ (2013). [DOI: 10.1128/genomeA.00238-12]

Aylward, F.O., Tremmel, D.M., Starrett, G.J., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., et al. "Complete genome of Serratia sp. strain FGI 94, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,2, e00239–12+ (2013). [DOI: 10.1128/genomeA.00239-12]

Balan, V., Chiaramonti, D. & Kumar, S. "Review of US and EU initiatives towards development, demonstration and commercialization of lignocellulosic biofuels." Biofuels, Bioproducts and Biorefining 7,6, 732–759+ (2013). [DOI: 10.1002/bbb.1436]

Balan, V., Jin, M., Culbertson, A. & Uppugundla, N. "The saccharification step: Trichoderma reesei cellulase hyper producer strains." in Lignocellulose Conversion: Enzymatic and Microbial Tools for Bioethanol Production. 65–92+ (Springer, 2013). [DOI: 10.1007/978-3-642-37861-4]

Bals, B.D., Gunawan, C., Moore, J., Teymouri, F. & Dale, B.E. "Enzymatic hydrolysis of pelletized AFEX™-treated corn stover at high solid loadings." Biotechnology and Bioengineering 111,2, 264–271+ (2013). [DOI: 10.1002/bit.25022/abstract]

Bandaru, V., Izaurralde, C., Manowitz, D., Link, R., Zhang, X. & Post, W.M. "Soil carbon change and net energy associated with biofuel production on marginal lands: a regional modeling perspective." Journal of Environmental Quality 42,6, 1802–1814+ (2013). [DOI: 10.2134/jeq2013.05.0171]

Bates, P.D., Stymne, S. & Ohlrogge, J. "Biochemical pathways in seed oil synthesis." Current Opinion in Plant Biology 16, 1–7+ (2013). [DOI: 10.1016/j.pbi.2013.02.015]