Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2019
Ryu, J. & Maravelias, C.T. "Simultaneous process and heat exchanger network synthesis using a discrete temperature grid." Industrial & Engineering Chemistry Research 58,15, 6002–6016+ (2019). [DOI: 10.1021/acs.iecr.8b04083]
2019
Sadre, R., Kuo, P., Chen, J., Yang, Y., Banerjee, A., Benning, C. & Hamberger, B. "Cytosolic lipid droplets as engineered organelles for production and accumulation of terpenoid biomaterials in leaves." Nature Communications 10,1, 853+ (2019). [DOI: 10.1038/s41467-019-08515-4]
Feedstocks
2019
Sakai, S. & Rothamer, D. "Impact of ethanol blending on particulate emissions from a spark-ignition direct-injection engine." Fuel 236, 1548–1558+ (2019). [DOI: 10.1016/j.fuel.2018.09.037]
Conversion
2019
Schuh, M.K., Bahlai, C.A., Malmstrom, C.M. & Landis, D.A. "Effect of switchgrass ecotype and cultivar on establishment, feeding, anddevelopment of fall armyworm (Lepidoptera: Noctuidae)." Journal of Economic Entomology 112,1, 440–449+ (2019). [DOI: 10.1093/jee/toy292]
Sustainability
2019
Shade, A. & Stopnisek, N. "Abundance-occupancy distributions to prioritize plant core microbiome membership." Current Opinion in Microbiology 49, 50–58+ (2019). [DOI: 10.1016/j.mib.2019.09.008]
2019
Shcherbak, I. & Robertson, P. "Nitrous oxide (N2O) emissions from subsurface soils of agricultural ecosystems." Ecosystems 22,7, 1650–1663+ (2019). [DOI: 10.1007/s10021-019-00363-z]
Sustainability
2019
Shen, W., Collings, C., Li, M., Markovicz, J., Ralph, J., Mansfield, S.D. & Ding, S.-Y. "Imaging changes in cell walls of engineered poplar by stimulated Raman scattering and atomic force microscopy." ACS Sustainable Chemistry & Engineering 7,12, 10616–10622+ (2019). [DOI: 10.1021/acssuschemeng.9b01166]
2019
Shuai, G., Martinez-Feria, R.A., Zhang, J., Li, S., Price, R. & Basso, B. "Capturing maize stand heterogeneity across yield-stability zones using unmanned aerial vehicles (UAV)." Sensors 19,20, 4446+ (2019). [DOI: 10.3390/s19204446]
2019
Smercina, D.N., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "To fix or not to fix: controls on free-living nitrogen fixation in the rhizosphere." Applied and Environmental Microbiology 85,6, e02546–18+ (2019). [DOI: 10.1128/AEM.02546-18]
2019
Smercina, D.N., Evans, S.E., Friesen, M.L. & Tiemann, L.K. "Optimization of the 15N2 incorporation and acetylene reduction methods for free-living nitrogen fixation." Plant and Soil 445, 595–611+ (2019). [DOI: 10.1007/s11104-019-04307-3]
Sustainability
2019
Song, Y., Motagamwala, A.H., Karlen, S.D., Dumesic, J.A., Ralph, J., Mobley, J.K. & Crocker, M. "A comparative study of secondary depolymerization methods on oxidized lignins." Green Chemistry 21,14, 3940–3947+ (2019). [DOI: 10.1039/c9gc01663e]
Feedstocks
2019
Spiesman, B.J., Bennett, A., Isaacs, R. & Gratton, C. "Harvesting effects on wild bee communities in bioenergy grasslands depend on nesting guild." Ecological Applications 29,2, e01828+ (2019). [DOI: 10.1002/eap.1828]
Sustainability
2019
Steenwyk, J.L., Opulente, D.A., Kominek, J., Shen, X.-X., Zhou, X., Labella, A.L., Bradley, N.P., Eichman, B.F., Cadez, N., Libkind, D., et al. "Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts." PLOS Biology 17,5, e3000255+ (2019). [DOI: 10.1371/journal.pbio.3000255]
Conversion
2019
Szymanski, L.M., Sanford, G.R., Heckman, K.A., Jackson, R.D. & Marín-Spiotta, E. "Conversion to bioenergy crops alters the amount and age of microbially-respired soil carbon." Soil Biology and Biochemistry 128, 35–44+ (2019). [DOI: 10.1016/j.soilbio.2018.08.025]
Sustainability
2019
Tatli, M., Hebert, A.S., Coon, J.J. & Amador-Noguez, D. "Genome wide phosphoproteome analysis of Zymomonas mobilis under anaerobic, aerobic, and N2-fixing conditions." Frontiers in Microbiology 10, 1986+ (2019). [DOI: 10.3389/fmicb.2019.01986]
2019
Throckmorton, K., Vinnik, V., Chowdhury, R., Cook, T., Chevrette, M.G., Maranas, C., Pfleger, B. & Thomas, M.G. "Directed evolution reveals the functional sequence space of an adenylation domain specificity code." ACS Chemical Biology 14,9, 2044–2054+ (2019). [DOI: 10.1021/acschembio.9b00532]
2019
Tobimatsu, Y., Takano, T., Umezawa, T. & Ralph, J. "Solution-state multidimensional NMR of lignins: approaches and applications." in Lignin: Biosynthesis, Functions and Economic Significance. 79–110+ (Nova Science Publishers, Inc., 2019).
Feedstocks
2019
Uygun, S., Azodi, C.B. & Shiu, S.-H. "Cis-regulatory code for predicting plant cell-type transcriptional response to high salinity." Plant Physiology 181, 1739–1751+ (2019). [DOI: 10.1104/pp.19.00653]
2019
Vanholme, R., De Meester, B., Ralph, J. & Boerjan, W. "Lignin biosynthesis and its integration into metabolism." Current Opinion in Biotechnology 56, 230–239+ (2019). [DOI: 10.1016/j.copbio.2019.02.018]
2019
Vanholme, R., Sundin, L., Seetso, K.C., Kim, H., Liu, X., Li, J., De Meester, B., Hoengenaert, L., Goeminne, G., Morreel, K., et al. "COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins." Nature Plants 5, 1066–1075+ (2019). [DOI: 10.1038/s41477-019-0510-0]
2019
VanWallendael, A., Soltani, A., Emery, N.C., Peixoto, M.M., Olsen, J. & Lowry, D.B. "A molecular view of plant local adaptation: incorporating stress-response networks." Annual Review Plant Biology 70, 559–583+ (2019). [DOI: 10.1146/annurev-arplant-050718-100114]
Sustainability
2019
Vermaas, J.V., Dixon, R.A., Chen, F., Mansfield, S.D., Boerjan, W., Ralph, J., Crowley, M.F. & Beckham, G.T. "Passive membrane transport of lignin-related compounds." Proceedings of the National Academy of Sciences of the United States of America 116,46, 23117–23123+ (2019). [DOI: 10.1073/pnas.1904643116]
2019
Vermaas, J.V., Petridus, L., Ralph, J., Crowley, M.F. & Beckham, G.T. "Systematic parameterization of lignin for the CHARMM force field." Green Chemistry 21, 109–122+ (2019). [DOI: 10.1039/C8GC03209B]
2019
von Haden, A.C., Kucharik, C.J., Jackson, R.D. & Marín-Spiotta, E. "Litter quantity, litter chemistry, and soil texture control changes in soil organic carbon fractions under bioenergy cropping systems of the North Central U.S." Biogeochemistry 143,3, 313–326+ (2019). [DOI: 10.1007/s10533-019-00564-7]
Sustainability
2019
Wagner, E.R., Myers, K.S., Riley, N.M., Coon, J.J. & Gasch, A.P. "PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production." PLOS ONE 14,5, e0212389+ (2019). [DOI: 10.1371/journal.pone.0212389]