Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2018
Goncalves, C., Wisecaver, J.H., Kominek, J., Oom, M.S., Leandro, M.J., Shen, X.-X., Opulente, D.A., Zhou, X., Peris, D., Kurtzman, C.P., et al. "Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage." eLife 7, e33034+ (2018). [DOI: 10.7554/eLife.33034]
Conversion
2018
Gould, B.A., Palacio-Mejia, J.D., Jenkins, J., Mamidi, S., Barry, K., Schmutz, J., Juenger, T.E. & Lowry, D.B. "Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)." BMC Genomics 19,1, 792+ (2018). [DOI: 10.1186/s12864-018-5179-7]
Sustainability
2018
Guber, A., Kravchenko, A., Razavi, B.S., Uteau, D., Peth, S., Blagodatskaya, E. & Kuzyakov, Y. "Quantitative soil zymography: mechanisms, processes of substrate and enzyme diffusion in porous media." Soil Biology and Biochemistry 127, 156–167+ (2018). [DOI: 10.1016/j.soilbio.2018.09.030]
Sustainability
2018
Hamilton, S.K., Hussain, M.Z., Lowrie, C., Basso, B. & Robertson, G.P. "Evapotranspiration is resilient in the face of land cover and climate change in a humid temperate catchment." Hydrological Processes 32,5, 655–663+ (2018). [DOI: 10.1002/hyp.11447]
Sustainability
2018
Haslun, J.A., Ostrom, N.E., Hegg, E.L. & Ostrom, P.H. "Estimation of isotope variation of N2O during denitrification by Pseudomonas aureofaciens and Pseudomonas chlororaphis: implications for N2O source apportionment." Biogeosciences 15,12, 3873–3882+ (2018). [DOI: 10.5194/bg-15-3873-2018]
Deconstruction
2018
Hatfield, R.D., Jung, H., Marita, J.M. & Kim, H. "Cell wall characteristics of a maize mutant selected for decreased ferulates." American Journal of Plant Sciences 9,3, 446–466+ (2018). [DOI: 10.4236/ajps.2018.93034]
Feedstocks
2018
Hebert, A.S., Prasad, S., Belford, M.W., Bailey, D.J., McAlister, G.C., Abbatiello, S.E., Huguet, R., Wouters, E.R., Dunyach, J.-J., Brademan, D.R., et al. "Comprehensive single-shot proteomics with FAIMS on a hybrid orbitrap mass spectrometer." Analytical Chemistry 90,15, 9529–9537+ (2018). [DOI: 10.1021/acs.analchem.8b02233]
2018
Higgins, D.A., Young, M.K., Tremaine, M., Sardi, M., Fletcher, J.M., Agnew, M., Liu, L., Dickinson, Q., Peris, D., Wrobel, R.L., et al. "Natural variation in the multidrug efflux pump SGE1 underlies ionic liquid tolerance in yeast." Genetics 210,1, 219–234+ (2018). [DOI: 10.1534/genetics.118.301161]
Conversion
2018
Hutchins, P.D., Russell, J.D. & Coon, J.J. "LipiDex: an integrated software package for high-confidence lipid identification." Cell Systems 6,5, 621–625.e5+ (2018). [DOI: 10.1016/j.cels.2018.03.011]
Conversion
2018
Jones, C.D., Oates, L.G., Robertson, P. & Izaurralde, C. "Perennialization and cover cropping mitigate soil carbon loss from residue harvesting." Journal of Environmental Quality 47,4, 710–717+ (2018). [DOI: 10.2134/jeq2017.04.0177]
Sustainability
2018
Karlen, S.D., Free, H.C., Padmakshan, D., Smith, B.G., Ralph, J. & Harris, P.J. "Commelinid monocotyledon lignins are acylated by p-coumarate." Plant Physiology 177, 513–521+ (2018). [DOI: 10.1104/pp.18.00298]
Feedstocks
2018
Kasmerchak, C.S. & Schaetzl, R. "Soils of the GLBRC marginal land experiment (MLE) sites." Kellogg Biological Station Long-term Ecological Research Special Publication DOI: 10.5281/zenodo.2578237, (2018). [DOI: 10.5281/zenodo.2578237]
Sustainability
2018
Kim, S., Zhang, X., Dale, B.E., Reddy, A.D., Jones, C.D. & Izaurralde, R.C. "EISA (Energy Independence and Security Act) compliant ethanol fuel from corn stover in a depot-based decentralized system." Biofuels, Bioproducts and Biorefining 12,5, 873–881+ (2018). [DOI: 10.1002/bbb.1899]
Deconstruction
2018
Kim, S.-J., Zemelis-Durfee, S., Jensen, J.K., Wilkerson, C.G., Keegstra, K. & Brandizzi, F. "In the grass species Brachypodium distachyon, the production of mixed-linkage (1,3;1,4)-β-glucan (MLG) occurs in the Golgi apparatus." The Plant Journal 93,6, 1062–1075+ (2018). [DOI: 10.1111/tpj.13830]
Feedstocks
2018
Kim, T.N., Bartel, S., Wills, B.D., Landis, D.A. & Gratton, C. "Disturbance differentially affects alpha and beta diversity of ants in tallgrass prairies." Ecosphere 9,10, e02399+ (2018). [DOI: 10.1002/ecs2.2399]
Sustainability
2018
Kong, L. & Maravelias, C.T. "An optimization-based approach for simultaneous chemical process and heat exchanger network synthesis." Industrial & Engineering Chemistry Research 57,18, 6330–6343+ (2018). [DOI: 10.1021/acs.iecr.8b00065]
Deconstruction
2018
Kontur, W.S., Bingman, C.A., Olmsted, C.N., Wassarman, D.R., Ulbrich, A., Gall, D.L., Smith, R.W., Yusko, L.M., Fox, B.G., Noguera, D.R., et al. "Novosphingobium aromaticivorans uses a Nu-class glutathione S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin." Journal of Biological Chemistry 293,14, 4955–4968+ (2018). [DOI: 10.1074/jbc.RA117.001268]
Conversion
2018
Krassowski, T., Coughlan, A.Y., Shen, X.-X., Zhou, X., Kominek, J., Opulente, D.A., Riley, R., Grigoriev, I.V., Maheshwari, N., Shields, D.C., et al. "Evolutionary instability of CUG-Leu in the genetic code of budding yeasts." Nature Communications 9,1, 1887+ (2018). [DOI: 10.1038/s41467-018-04374-7]
Conversion
2018
Krause, D.J., Kominek, J., Opulente, D.A., Shen, X.-X., Zhou, X., Langdon, Q.K., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., et al. "Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts." Proceedings of the National Academy of Sciences of the United States of America 115,43, 11030–11035+ (2018). [DOI: 10.1073/pnas.1806268115]
Conversion
2018
Kravchenko, A.N., Guber, A.K., Quigley, M.Y., Koestel, J., Gandhi, H. & Ostrom, N.E. "X-ray computed tomography to predict soil N2O production via bacterial denitrification and N2O emission in contrasting bioenergy cropping systems." Global Change Biology – Bioenergy 10,11, 894–909+ (2018). [DOI: 10.1111/gcbb.12552]
Sustainability
2018
Kuang, M.C., Kominek, J., Alexander, W.G., Cheng, J.-F., Wrobel, R.L. & Hittinger, C.T. "Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution." Molecular Biology and Evolution 35,8, 1968–1981+ (2018). [DOI: 10.1093/molbev/msy102]
Conversion
2018
Kumar, R., Bhagia, S., Smith, M.D., Petridis, L., Ong, R.G., Cai, C.M., Mittal, A., Himmel, M.H., Balan, V., Dale, B.E., et al. "Cellulose-hemicellulose interactions at elevated temperatures increase cellulose recalcitrance to biological conversion." Green Chemistry 20,4, 921–934+ (2018). [DOI: 10.1039/C7GC03518G]
Deconstruction
2018
Kutlu, T., Guber, A.K., Rivers, M.L. & Kravchenko, A.N. "Moisture absorption by plant residue in soil." Geoderma 316, 47–55+ (2018). [DOI: 10.1016/j.geoderma.2017.11.043]
Sustainability
2018
Lai, Y.-S., Stefano, G., Zemelis-Durfee, S., Ruberti, C., Gibbons, L. & Brandizzi, F. "Systemic signaling contributes to the unfolded protein response of the plant endoplasmic reticulum." Nature Communications 9,1, 3918+ (2018). [DOI: 10.1038/s41467-018-06289-9]
Feedstocks
2018
Lan, W., Yue, F., Rencoret, J., del Rio, J.C., Boerjan, W., Lu, F. & Ralph, J. "Elucidating tricin-lignin structures: assigning correlations in HSQC spectra of monocot lignins." Polymers 10,8, 916+ (2018). [DOI: 10.3390/polym10080916]
Feedstocks