Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.
Year Publication Keywords
2020
Yu, L., Harris, E., Lewicka-Szczebak, D., Barthel, M., Bloomberg, M.R.A., Harris, S.J., Johnson, M.S., Lehmann, M.F., Liisberg, J., Muller, C., et al. "What can we learn from N2O isotope data? – analytics, processes and modelling." Rapid Communications in Mass Spectrometry 34,20, e8858+ (2020). [DOI: 10.1002/rcm.8858]
2020
Zhang, Y., Haan, N.L. & Landis, D.A. "Landscape composition and configuration have scale-dependent effects on agricultural pest suppression." Agriculture, Ecosystems & Environment 302, 107085+ (2020). [DOI: 10.1016/j.agee.2020.107085]
Sustainability
2020
Zhang, Y., Serate, J., Xie, D., Gajbhiye, S., Kulzer, P., Sanford, G., Russell, J.D., McGee, M., Foster, C., Coon, J.J., et al. "Production of hydrolysates from unmilled AFEX-pretreated switchgrass and comparative fermentation with Zymomonas mobilis." Bioresource Technology Reports 11, 100517+ (2020). [DOI: 10.1016/j.biteb.2020.100517]
2020
Zheng, H., Kim, K., Kravchenko, A., Rivers, M. & Guber, A. "Testing Os staining approach for visualizing soil organic matter patterns in intact samples via X-ray dual-energy tomography scanning." Environmental Science & Technology 54, 8980–8989+ (2020). [DOI: 10.1021/acs.est.0c01028]
2020
Zhou, Y., Klinger, G.E., Hegg, E.L., Saffron, C.M. & Jackson, J.E. "Multiple mechanisms mapped in aryl alkyl ether cleavage via aqueous electrocatalytic hydrogenation over skeletal nickel." Journal of the American Chemical Society 142,8, 4037–4050+ (2020). [DOI: 10.1021/jacs.0c00199]
Conversion
2020
Zhu, X., Jackson, R.D., DeLucia, E.H., Tiedje, J.M. & Liang, C. "The soil microbial carbon pump: from conceptual insights to empirical assessments." Global Change Biology 26,11, 6032–6039+ (2020). [DOI: 10.1111/gcb.15319]
Sustainability
2019
Abraha, M., Gelfand, I., Hamilton, S.K., Chen, J. & Robertson, P. "Carbon debt of field-scale conservation reserve program grasslands converted to annual and perennial bioenergy crops." Environmental Research Letters 14,2, 024019+ (2019). [DOI: 10.1088/1748-9326/aafc10]
Sustainability
2019
Agarwal, U.P., Ralph, S.A., Padmakshan, D., Liu, S. & Foster, C.E. "Estimation of syringyl units in wood lignins by FT-Raman spectroscopy." Journal of Agricultural and Food Chemistry 67,15, 4367–4374+ (2019). [DOI: 10.1021/acs.jafc.8b06707]
Feedstocks
2019
Ando, D. & Ralph, J. "Method to regioselectively iodine-tag free-phenolic aromatic endgroups in lignin for 1H–13C-HSQC NMR analysis." ACS Sustainable Chemistry & Engineering 7, 18624–18629+ (2019). [DOI: 10.1021/acssuschemeng.9b04981]
2019
Avci, U., Zhou, X., Pattathil, S., Sousa, L. da C., Hahn, M.G., Dale, B., Xu, Y. & Balan, V. "Effects of extractive ammonia pretreatment on the ultrastructure and gllycan composition of corn stover." Frontiers in Energy Research 7, 85+ (2019). [DOI: 10.3389/fenrg.2019.00085]
Deconstruction
2019
Azodi, C.B., Bolger, E., McCarren, A., Roantree, M., Campos, G. de los & Shiu, S.-H. "Benchmarking parametric and machine learning models for genomic prediction of complex traits." G3: Genes | Genomes | Genetics 9,11, 3691–3702+ (2019). [DOI: 10.1534/g3.119.400498]
2019
Baker, E.P. & Hittinger, C.T. "Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function." PLOS Genetics 15,4, e1007786+ (2019). [DOI: 10.1371/journal.pgen.1007786]
Conversion
2019
Baker, E.P., Peris, D., Moriarty, R.V., Li, X.C., Fay, J.C. & Hittinger, C.T. "Mitochondrial DNA and temperature tolerance in lager yeasts." Science Advances 5,1, eaav1869+ (2019). [DOI: 10.1126/sciadv.aav1869]
Conversion
2019
Banerjee, A., Arnesen, J.A., Moser, D., Motsa, B.B., Johnson, S.R. & Hamberger, B. "Engineering modular diterpene biosynthetic pathways in Physcomitrella patens." Planta 249,1, 221–233+ (2019). [DOI: 10.1007/s00425-018-3053-0]
Feedstocks
2019
Basso, B., Shuai, G., Zhang, J. & Robertson, P. "Yield stability analysis reveals sources of large-scale nitrogen loss from the US Midwest." Scientific Reports 9, 5774+ (2019). [DOI: 10.1038/s41598-019-42271-1]
2019
Benucci, G.M.N., Haridas, S., Labutti, K., Marozzi, G., Antonielli, L., Sanchez, S., Marco, P., Wang, X., Barry, K., Lipzen, A., et al. "Draft genome sequence of the ectomycorrhizal ascomycete Sphaerosporella brunnea." Microbiology Resource Announcements 8,50, e00857–19+ (2019). [DOI: 10.1128/mra.00857-19]
Sustainability
2019
Bhalla, A., Cai, C.M., Xu, F., Singh, S.K., Bansal, N., Phongpreecha, T., Dutta, T., Foster, C.E., Kumar, R., Simmons, B.A., et al. "Performance of three delignifying pretreatments on hardwoods: hydrolysis yields, comprehensive mass balances, and lignin properties." Biotechnology for Biofuels 12, 213+ (2019). [DOI: 10.1186/s13068-019-1546-0]
Deconstruction
2019
Bonito, G., Benucci, G.M.N., Hameed, K., Weighill, D., Jones, P., Chen, K.-H., Jacobson, D., Schadt, C. & Vilgalys, R. "Fungal-bacterial networks in the Populus rhizobiome are impacted by soil properties and host genotype." Frontiers in Microbiology 10, 481+ (2019). [DOI: 10.3389/fmicb.2019.00481]
Sustainability
2019
Bowsher, A.W., Kearns, P.J. & Shade, A. "16S rRNA/rRNA gene ratios and cell activity staining reveal consistent patterns of microbial activity in plant-associated soil." mSystems 4,2, e00003–19+ (2019). [DOI: 10.1128/mSystems.00003-19]
2019
Cadez, N., Bellora, N., Ulloa, R., Hittinger, C.T. & Libkind, D. "Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina." PLOS ONE 14,1, e0210792+ (2019). [DOI: 10.1371/journal.pone.0210792]
Conversion
2019
Cao, P., Kim, S.-J., Xing, A., Schenck, C.A., Liu, L., Jiang, N., Wang, J., Last, R.L. & Brandizzi, F. "Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis." Elife 8, e50747+ (2019). [DOI: 10.7554/eLife.50747]
2019
Chen, J., Sciusco, P., Ouyang, Z., Zhang, R., Henebry, G.M., John, R. & Roy, D.P. "Linear downscaling from MODIS to landsat: connecting landscape composition with ecosystem functions." Landscape Ecology 34,12, 2917–2934+ (2019). [DOI: 10.1007/s10980-019-00928-2]
Sustainability
2019
Sousa, L. da C., Humpula, J., Balan, V., Dale, B.E. & Chundawat, S.P. "Impact of ammonia pretreatment conditions on the cellulose III allomorph ultrastructure and its enzymatic digestibility." ACS Sustainable Chemistry & Engineering 7,17, 14411–14424+ (2019). [DOI: 10.1021/acssuschemeng.9b00606]
Deconstruction
2019
Daly, P., McClellan, C., Maluk, M., Oakey, H., Lapierre, C., Waugh, R., Stephens, J., Marshall, D., Barakate, A., Tsuji, Y., et al. "RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family." Plant Biotechnology Journal 17,3, 594–607+ (2019). [DOI: 10.1111/pbi.13001]
Feedstocks
2019
Donohue, T.J. "Shedding light on a Group IV (ECF11) alternative sigma factor." Molecular Microbiology 112,2, 374–384+ (2019). [DOI: 10.1111/mmi.14280]