Publications

Liu, Y., Landick, B. & Raman, S. "A regulatory NADH/NAD+ redox biosensor for bacteria." ACS Synthetic Biology 8,2, 264–273+ (2019). [DOI: 10.1021/acssynbio.8b00485]

Lloyd, J.P., Bowman, M.J., Azodi, C.B., Sowers, R.P., Moghe, G.D., Childs, K.L. & Shiu, S.-H. "Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae." Scientific Reports 9,1, 12122+ (2019). [DOI: 10.1038/s41598-019-47797-y]

Lowry, D.B., Lovell, J.T., Zhang, L., Bonnette, J., Fay, P.A., Mitchell, R.B., Lloyd-Reilley, J., Boe, A.R., Wu, Y., Rouquette, F.M., et al. "QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient." Proceedings of the National Academy of Sciences of the United States of America 116,26, 12933–12941+ (2019). [DOI: 10.1073/pnas.1821543116]

Mahon, E.L. & Mansfield, S.D. "Tailor-made trees: engineering lignin for ease of processing and tomorrow’s bioeconomy." Current Opinion in Biotechnology 56, 147–155+ (2019). [DOI: 10.1016/j.copbio.2018.10.014]

Manning, P., Loos, J., Barnes, A.D., Batáry, P., Bianchi, F.J.J.A., Buchmann, N., De Deyn, G.B., Ebeling, A., Eisenhauer, N., Fischer, M., et al. "Transferring biodiversity-ecosystem function research to the management of ‘real-world’ ecosystems." Advances in Ecological Research 61, 323–356+ (2019). [DOI: 10.1016/bs.aecr.2019.06.009]

Martien, J.I., Hebert, A.S., Stevenson, D.M., Regner, M.R., Khana, D.B., Coon, J.J. & Amador-Noguez, D. "Systems-level analysis of oxygen exposure in Zymomonas mobilis: implications for isoprenoid production." mSystems 4,1, e00284–18+ (2019). [DOI: 10.1128/mSystems.00284-18]

McClelland, D.J., Galebach, P.H., Motagamwala, A.H., Wittrig, A.M., Karlen, S.D., Buchanan, S., Dumesic, J.A. & Huber, G.W. "Supercritical methanol depolymerization and hydrodeoxygenation of lignin and biomass over reduced copper porous metal oxides." Green Chemistry 21,11, 2988–3005+ (2019). [DOI: 10.1039/C9GC00589G]

Mehrer, C.R., Rand, J.M., Incha, M.R., Cook, T.B., Demir, B., Motagamwala, A.H., Kim, D., Dumesic, J.A. & Pfleger, B.F. "Growth-coupled bioconversion of levulinic acid to butanone." Metabolic Engineering 55, 92–101+ (2019). [DOI: 10.1016/j.ymben.2019.06.003]

Mellmer, M.A., Sanpitakseree, C., Demir, B., Ma, K., Elliott, W.A., Bai, P., Johnson, R.L., Walker, T.W., Shanks, B.H., Rioux, R.M., et al. "Effects of chloride ions in acid-catalyzed biomass dehydration reactions in polar aprotic solvents." Nature Communications 10, 1132+ (2019). [DOI: 10.1038/s41467-019-09090-4]

Mokomele, T., Sousa, L. da C., Balan, V., van Rensburg, E., Dale, B.E. & Görgens, J.F. "Incorporating anaerobic co-digestion of steam exploded or ammonia fiber expansion pretreated sugarcane residues with manure into a sugarcane-based bioenergy-livestock nexus." Bioresource Technology 272, 326–336+ (2019). [DOI: 10.1016/j.biortech.2018.10.049]

Moore, B.M., Wang, P., Fan, P., Leong, B., Schenck, C.A., Lloyd, J.P., Lehti-Shiu, M.D., Last, R.L., Pichersky, E. & Shiu, S.-H. "Robust predictions of specialized metabolism genes through machine learning." Proceedings of the National Academy of Sciences of the United States of America 116,6, 2344–2353+ (2019). [DOI: 10.1073/pnas.1817074116]

Motagamwala, A.H., Huang, K., Maravelias, C.T. & Dumesic, J.A. "Solvent system for effective near-term production of hydroxymethylfurfural (HMF) with potential for long-term process improvement." Energy & Environmental Science 12,7, 2212–2222+ (2019). [DOI: 10.1039/C9EE00447E]

Myers, K.S., Riley, N.M., MacGilvray, M.E., Sato, T.K., McGee, M., Heilberger, J., Coon, J.J. & Gasch, A.P. "Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast." PLOS Genetics 15,3, e1008037+ (2019). [DOI: 10.1371/journal.pgen.1008037]

Ng, R.T.L., Fasahati, P., Huang, K. & Maravelias, C.T. "Utilizing stillage in the biorefinery: economic, technological and energetic analysis." Applied Energy 241, 491–503+ (2019). [DOI: 10.1016/j.apenergy.2019.03.020]

Opulente, D.A., Langdon, Q.K., Buh, K.V., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Jarzyna, M., Considine, S.L., Schneider, R.M. & Hittinger, C.T. "Pathogenic budding yeasts isolated outside of clinical settings." FEMS Yeast Research 19,3, foz032+ (2019). [DOI: 10.1093/femsyr/foz032]

Oyarce, P., De Meester, B., Fonseca, F., de Vries, L., Goeminne, G., Pallidis, A., De Rycke, R., Tsuji, Y., Li, Y., Van den Bosch, S., et al. "Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing." Nature Plants 5,2, 225–237+ (2019). [DOI: 10.1038/s41477-018-0350-3]

Panchy, N.L., Azodi, C.B., Winship, E.F., O’Malley, R.C. & Shiu, S.-H. "Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication." BMC Evolutionary Biology 19,1, 77+ (2019). [DOI: 10.1186/s12862-019-1398-z]

Park, S., Song, B., Shen, W. & Ding, S.-Y. "A mutation in the catalytic domain of cellulose synthase 6 halts its transport to the Golgi apparatus." Journal of Experimental Botany 70,21, 6071–6083+ (2019). [DOI: 10.1093/jxb/erz369]

Perez, J.M., Kontur, W.S., Alherech, M., Coplien, J., Karlen, S.D., Stahl, S.S., Donohue, T.J. & Noguera, D.R. "Funneling aromatic products of chemically depolymerized lignin into 2-pyrone-4-6- dicarboxylic acid with Novosphingobium aromaticivorans." Green Chemistry 21,6, 1340–1350+ (2019). [DOI: 10.1039/c8gc03504k]

Rafiee, M., Alherech, M., Karlen, S.D. & Stahl, S.S. "Electrochemical aminoxyl-mediated oxidation of primary alcohols in lignin to carboxylic acids: polymer modification and depolymerization." Journal of the American Chemical Society 141,38, 15266–15276+ (2019). [DOI: 10.1021/jacs.9b07243]

Ralph, J., Lapierre, C. & Boerjan, W. "Lignin structure and its engineering." Current Opinion in Biotechnology 56, 240–249+ (2019). [DOI: 10.1016/j.copbio.2019.02.019]

Ramstein, G.P. & Casler, M.D. "Extensions of BLUP models for genomic prediction in heterogeneous populations: application in a diverse switchgrass sample." G3: Genes | Genomes | Genetics 9,3, 789–805+ (2019). [DOI: 10.1534/g3.118.200969]

Razavi, B.S., Zhang, X., Bilyera, N., Guber, A. & Zarebanadkouki, M. "Soil zymography: simple and reliable? Review of current knowledge and optimization of the method." Rhizosphere 11, 100161+ (2019). [DOI: 10.1016/j.rhisph.2019.100161]

Rencoret, J., Neiva, D., Marques, G., Gutierrez, A., Kim, H., Gominho, J., Pereira, H., Ralph, J. & del Rio, J.C. "Hydroxystilbene glucosides are incorporated into Norway spruce bark lignin." Plant Physiology 180,3, 1310–1321+ (2019). [DOI: 10.1104/pp.19.00344]

Roley, S.S., Xue, C., Hamilton, S.K., Tiedje, J.M. & Robertson, P. "Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.)." Soil Biology and Biochemistry 129, 90–98+ (2019). [DOI: 10.1016/j.soilbio.2018.11.006]