Publications

Luo, X., Li, Y., Gupta, N.K., Sels, B., Ralph, J. & Shuai, L. "Protection strategies enable selective conversion of biomass." Angewandte Chemie International Edition 59,29, 11704–11716+ (2020). [DOI: 10.1002/anie.201914703]

MacGilvray, M.E., Shishkova, E., Place, M., Wagner, E.R., Coon, J.J. & Gasch, A.P. "Phosphoproteome response to dithiothreitol reveals unique versus shared features of Saccharomyces cerevisiae stress responses." Journal of Proteome Research 19, 3405–3417+ (2020). [DOI: 10.1021/acs.jproteome.0c00253]

Magnoli, S.M. "Rapid adaptation (or not) in restored plant populations." Evolutionary Applications 13,8, 2030–2037+ (2020). [DOI: 10.1111/eva.12959]

Magnoli, S.M. & Lau, J.A. "Evolution in novel environments: Do restored prairie populations experience strong selection?" Ecology 101,10, e03120+ (2020). [DOI: 10.1002/ecy.3120]

Magnoli, S.M. & Lau, J.A. "Novel plant–microbe interactions: rapid evolution of a legume–rhizobium mutualism in restored prairies." Journal of Ecology 108,4, 1241–1249+ (2020). [DOI: 10.1111/1365-2745.13366]

Martinez-Feria, R. & Basso, B. "Predicting soil carbon changes in switchgrass grown on marginal lands under climate change and adaptation strategies." Global Change Biology – Bioenergy 12,9, 742–755+ (2020). [DOI: 10.1111/gcbb.12726]

Martinez-Feria, R.A. & Basso, B. "Unstable crop yields reveal opportunities for site-specific adaptations to climate variability." Scientific Reports 10,1, 2885+ (2020). [DOI: 10.1038/s41598-020-59494-2]

Miller, G.P., Bhat, W.W., Lanier, E.R., Johnson, S.R., Mathieu, D.T. & Hamberger, B. "The biosynthesis of the anti-microbial diterpenoid leubethanol in Leucophyllum frutescens proceeds via an all-cis prenyl intermediate." The Plant Journal 104,3, 693–705+ (2020). [DOI: 10.1111/tpj.14957]

Myers, K.S., Place, M., Noguera, D.R. & Donohue, T.J. "COnTORT: COmprehensive Transcriptomic ORganizational Tool for simultaneously retrieving and organizing numerous gene expression data sets from the NCBI Gene Expression Omnibus database." Microbiology Resource Announcements 9,25, e00587–20+ (2020). [DOI: 10.1128/MRA.00587-20]

Myers, K.S., Vera, J.M., Lemmer, K.C., Linz, A.M., Landick, R., Noguera, D.R. & Donohue, T.J. "Genome-wide identification of transcription start sites in two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444." Microbiology Resource Announcements 9,36, e00880–20+ (2020). [DOI: 10.1128/MRA.00880-20]

Ong, W.K., Courtney, D.K., Pan, S., Andrade, R.B., Kiley, P.J., Pfleger, B.F. & Reed, J.L. "Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4." PLOS Computational Biology 16,8, e1008137+ (2020). [DOI: 10.1371/journal.pcbi.1008137]

Collaborative, O.C.B.E. "1.21: BioFuel Project." in Lab Manual: Introduction to Biotechnology. (Academic Senate for California Community Colleges Online Educational Resource Initiative (ASCCC-OERI), 2020). [DOI: none will be provided]

Oshlag, Z., Ma, Y., Morse, K., Burger, B.T., Lemke, R.A., Karlen, S.D., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris." Applied and Environmental Microbiology 86,3, e01888–19+ (2020). [DOI: 10.1128/AEM.01888-19]

Panchy, N.L., Lloyd, J.P. & Shiu, S.-H. "Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data." BMC Genomics 21,1, 159+ (2020). [DOI: 10.1186/s12864-020-6554-8]

Park, S. & Ding, S.-Y. "The N-terminal zinc finger of CELLULOSE SYNTHASE6 is critical in defining its functional properties by determining the level of homodimerization in Arabidopsis." The Plant Journal 103,5, 1826–1838+ (2020). [DOI: 10.1111/tpj.14870]

Peris, D., Alexander, W.G., Fisher, K.J., Moriarty, R.V., Basuino, M.G., Ubbelohde, E.J., Wrobel, R.L. & Hittinger, C.T. "Synthetic hybrids of six yeast species." Nature Communications 11,1, 2085+ (2020). [DOI: 10.1038/s41467-020-15559-4]

Petipas, R.H., Bowsher, A.W., Bekkerring, C., Jack, C.N., McLachlan, E.E., White, R.A., III, Younginger, B.S., Tiemann, L.K., Evans, S.E. & Friesen, M.L. "Interactive effects of microbes and nitrogen on Panicum virgatum root functional traits and patterns of phenotypic selection." International Journal of Plant Sciences 181,1, 20–32+ (2020). [DOI: 10.1086/706198]

Poe, J., Reed, D.E., Abraha, M., Chen, J., Dahlin, K.M. & Desai, A.R. "Geospatial coherence of surface-atmosphere fluxes in the upper Great Lakes region." Agricultural and Forest Meteorology 295, 108188+ (2020). [DOI: 10.1016/j.agrformet.2020.108188]

Ralph, J. "Tricin and tricin-lignins in Medicago versus in monocots." New Phytologist 228,1, 11–14+ (2020). [DOI: 10.1111/nph.16827]

Reed, D.E., Chen, J., Abraha, M., Robertson, P. & Dahlin, K.M. "The shifting role of mRUE for regulating ecosystem production." Ecosystems 23, 359–369+ (2020). [DOI: 10.1007/s10021-019-00407-4]

Ruan, L. & Robertson, P. "No-till establishment improves the climate benefit of bioenergy crops on marginal grasslands." Soil Science Society of America Journal 84,4, 1280–1295+ (2020). [DOI: 10.1002/saj2.20082]

Ryu, J., Kong, L., de Lima, A.E.P. & Maravelias, C.T. "A generalized superstructure-based framework for process synthesis." Computers & Chemical Engineering 133, 106653+ (2020). [DOI: 10.1016/j.compchemeng.2019.106653]

Ryu, J. & Maravelias, C.T. "Efficient generalized shortcut distillation model with improved accuracy for superstructure-based process synthesis." AIChE Journal 66,11, e16994+ (2020). [DOI: 10.1002/aic.16994]

Ryu, J. & Maravelias, C.T. "Computationally efficient optimization models for preliminary distillation column design and separation energy targeting." Computers & Chemical Engineering 143, 107072+ (2020). [DOI: 10.1016/j.compchemeng.2020.107072]

Scarborough, M.J., Hamilton, J.J., Erb, E.A., Donohue, T.J. & Noguera, D.R. "Diagnosing and predicting mixed-culture fermentations with unicellular and guild-based metabolic models." mSystems 5,5, e00755–20+ (2020). [DOI: 10.1128/mSystems.00755-20]