Publications

Zhang, B., Penton, R., Yu, Z., Xue, C., Chen, Q., Chen, Z., Yan, C., Zhang, Q., Zhao, M., Quensen, J.F., et al. "A new primer set for Clade I nosZ that recovers genes from a broader range of taxa." Biology and Fertility of Soils 57,4, 523–531+ (2021). [DOI: 10.1007/s00374-021-01544-6]

Zhang, J., Shen, W., Collings, C., Meulen, K.A.V., Fox, B.G., Ramos, L.M.V., Dumesic, J.A. & Ding, S.-Y. "Visualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatment." Chemical Engineering Journal 412, 128660+ (2021). [DOI: 10.1016/j.cej.2021.128660]

Zhang, L., MacQueen, A., Bonnette, J., Fritschi, F.B., Lowry, D.B. & Juenger, T.E. "QTL x environment interactions underlie ionome divergence in switchgrass." G3: Genes | Genomes | Genetics 11,7, jkab144+ (2021). [DOI: 10.1093/g3journal/jkab144]

Zhang, X., Lark, T.J., Clark, C.M., Yuan, Y. & LeDuc, S.D. "Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016." Environmental Research Letters 16,5, 054018+ (2021). [DOI: 10.1088/1748-9326/abecbe]

Zhou, P., Sanchez-Rivera, K.L., Huber, G.W. & Van Lehn, R.C. "Computational approach for rapidly predicting temperature-dependent polymer solubilities using molecular-scale models." ChemSusChem 14,19, 4307–4316+ (2021). [DOI: 10.1002/cssc.202101137]

Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73–89+ (2020). [DOI: 10.1093/treephys/tpz020]

Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810–822+ (2020). [DOI: 10.1002/hyp.13630]

Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488–1498+ (2020). [DOI: 10.1111/ele.13576]

Anson, C.W. & Stahl, S.S. "Mediated fuel cells: soluble redox mediators and their applications to electrochemical reduction of O2 and oxidation of H2, alcohols, biomass, and complex fuels." Chemical Reviews 120,8, 3749–3786+ (2020). [DOI: 10.1021/acs.chemrev.9b00717]

Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, lqaa049+ (2020). [DOI: 10.1093/nargab/lqaa049]

Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139–151+ (2020). [DOI: 10.1105/tpc.19.00332]

Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442–455+ (2020). [DOI: 10.1016/j.tig.2020.03.005]

Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, e00351–20+ (2020). [DOI: 10.1128/mBio.00351-20]

Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, e01621–20+ (2020). [DOI: 10.1128/AEM.01621-20]

Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, e130+ (2020). [DOI: 10.1002/cpmc.130]

Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482–7493+ (2020). [DOI: 10.1073/pnas.1918539117]

Benucci, G.M.N., Rennick, B. & Bonito, G. "Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?" PLOS ONE 15,8, e0237368+ (2020). [DOI: 10.1371/journal.pone.0237368]

Bhandari, D.D. & Brandizzi, F. "Plant endomembranes and cytoskeleton: moving targets in immunity." Current Opinion in Plant Biology 58, 8–16+ (2020). [DOI: 10.1016/j.pbi.2020.09.003]

Bilyera, N., Kuzyakova, I., Guber, A., Razavi, B.S. & Kuzyakov, Y. "How “hot” are hotspots: statistically localizing the high-activity areas on soil and rhizosphere images." Rhizosphere 16, 100259+ (2020). [DOI: 10.1016/j.rhisph.2020.100259]

Chang, H., Bajaj, I., Huber, G.W., Maravelias, C.T. & Dumesic, J.A. "Catalytic strategy for conversion of fructose to organic dyes, polymers, and liquid fuels." Green Chemistry 22, 5285–5295+ (2020). [DOI: 10.1039/D0GC01576H]

Chang, H., Huber, G.W. & Dumesic, J.A. "Chemical-switching strategy for synthesis and controlled release of norcantharimides from a biomass-derived chemical." ChemSusChem 13,19, 5213–5219+ (2020). [DOI: 10.1002/cssc.202001471]

Chew, A.K., Jiang, S., Zhang, W., Zavala, V.M. & Van Lehn, R.C. "Fast predictions of liquid-phase acid-catalyzed reaction rates using molecular dynamics simulations and convolutional neural networks." Chemical Science 11, 12464–12476+ (2020). [DOI: 10.1039/D0SC03261A]

Chew, A.K., Walker, T.W., Shen, Z., Demir, B., Witteman, L., Euclide, J., Huber, G.W., Dumesic, J.A. & Van Lehn, R.C. "Effect of mixed-solvent environments on the selectivity of acid-catalyzed dehydration reactions." ACS Catalysis 10, 1679–1691+ (2020). [DOI: 10.1021/acscatal.9b03460]

Chundawat, S.P.S., Pal, R.K., Zhao, C., Campbell, T., Teymouri, F., Videto, J., Nielson, C., Wieferich, B., Sousa, L., Dale, B.E., et al. "Ammonia fiber expansion (AFEX) pretreatment of lignocellulosic biomass." Journal of Visualized Experiments 158, e57488+ (2020). [DOI: 10.3791/57488]

Dahlin, K.M., Akanga, D., Lombardozzi, D.L., Reed, D.E., Shirkey, G., Lei, C., Abraha, M. & Chen, J. "Challenging a global land surface model in a local socio-environmental system." Land 9, 398+ (2020). [DOI: 10.3390/land9100398]