Publications

Sanford, G., Jackson, R.D., Rui, Y. & Kucharik, C.J. "Land use-land cover gradient demonstrates the importance of perennial grasslands with intact soils for building soil carbon in the fertile Mollisols of the North Central US." Geoderma 418, 115854+ (2022). [DOI: 10.1016/j.geoderma.2022.115854]

Scarborough, M.J., Myers, K.S., Fortney, N.W., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from a microbiome converting xylose to medium-chain carboxylic acids." Microbiology Resource Announcements 11,4, e01151–21+ (2022). [DOI: 10.1128/mra.01151-21]

Sciusco, P., Chen, J., Giannico, V., Abraha, M., Lei, C., Shirkey, G., Yuan, J. & Robertson, P. "Albedo-induced global warming impact at multiple temporal scales within an Upper Midwest USA watershed." Land 11,2, 283+ (2022). [DOI: 10.3390/land11020283]

Shirkey, G., John, R., Chen, J., Dahlin, K., Abraha, M., Sciusco, P., Lei, C. & Reed, D.E. "Fine resolution remote sensing spectra improves estimates of gross primary production of croplands." Agricultural and Forest Meteorology 326, 109175+ (2022). [DOI: 10.1016/j.agrformet.2022.109175]

Shuai, G. & Basso, B. "Subfield maize yield prediction improves when in-season crop water deficit is included in remote sensing imagery-based models." Remote Sensing of Environment 272, 112938+ (2022). [DOI: 10.1016/j.rse.2022.112938]

Smith, R.A., Beebe, E.T., Bingman, C.A., Meulen, K.V., Eugene, A., Steiner, A.J., Karlen, S.D., Ralph, J. & Fox, B.G. "Identification and characterization of a set of monocot BAHD monolignol transferases." Plant Physiology 189,1, 37–48+ (2022). [DOI: 10.1093/plphys/kiac035]

Smith, R.A., Lu, F., Muro-Villanueva, F., Cusumano, J.C., Chapple, C. & Ralph, J. "Manipulation of lignin monomer composition combined with the introduction of monolignol conjugate biosynthesis leads to synergistic changes in lignin structure." Plant and Cell Physiology 63,6, 744–754+ (2022). [DOI: 10.1093/pcp/pcac031]

Spurley, W.J., Fisher, K.J., Langdon, Q.K., Buh, K.V., Jarzyna, M., Haase, M.A.B., Sylvester, K., Moriarty, R.V., Rodriguez, D., Sheddan, A., et al. "Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates." Yeast 39,1-2, 55–68+ (2022). [DOI: 10.1002/yea.3679]

Steenwyk, J.L., Phillips, M.A., Yang, F., Date, S.S., Graham, T.R., Berman, J., Hittinger, C.T. & Rokas, A. "An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function." Science Advances 8,18, eabn0105+ (2022). [DOI: 10.1126/sciadv.abn0105]

Sumer, Z. & Van Lehn, R.C. "Data-centric development of lignin structure-solubility relationships in deep eutectic solvents using molecular simulations." ACS Sustainable Chemistry & Engineering 10,31, 10144–10156+ (2022). [DOI: 10.1021/acssuschemeng.2c01375]

Taifan, G.S.P. & Maravelias, C.T. "Generalized optimization-based synthesis of membrane systems for multicomponent gas mixture separation." Chemical Engineering Science 252, 117482+ (2022). [DOI: 10.1016/j.ces.2022.117482]

Tejera, M., Boersma, N.N., Archontoulis, S.V., Miguez, F.E., VanLoocke, A. & Heaton, E.A. "Photosynthetic decline in aging perennial grass is not fully explained by leaf nitrogen." Journal of Experimental Botany 73,22, 7582–7595+ (2022). [DOI: 10.1093/jxb/erac382]

Tiedge, K., Li, X., Merrill, A.T., Davisson, D., Chen, Y., Yu, P., Tantillo, D.J., Last, R.L. & Zerbe, P. "Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)." New Phytologist 236,4, 1393–1408+ (2022). [DOI: 10.1111/nph.18443]

Tilhou, N.W. & Casler, M. "Genetic correlations between switchgrass performance in sward conditions and surrogate measures." Crop Science 62,4, 1511–1521+ (2022). [DOI: 10.1002/csc2.20767]

Tilhou, N.W. & Casler, M.D. "Surveying grassland islands: the genetics and performance of Appalachian switchgrass (Panicum virgatum L.) collections." Genetic Resources and Crop Evolution 69,3, 1039–1055+ (2022). [DOI: 10.1007/s10722-021-01282-6]

Tilhou, N.W. & Casler, M.D. "Biomass yield improvement in switchgrass through genomic prediction of flowering time." Global Change Biology – Bioenergy 14,9, 1023–1034+ (2022). [DOI: 10.1111/gcbb.12983]

Tilhou, N.W., Kaeppler, S.M. & Casler, M.D. "Strong parallel evidence of selection during switchgrass sward establishment in hybrid and lowland ecotypes." Grassland Research 1,1, 31–42+ (2022). [DOI: 10.1002/glr2.12007]

Trujillo, E.A., Hebert, A.S., Vazquez, J.C.R., Brademan, D.R., Tatli, M., Amador-Noguez, D., Meyer, J.G. & Coon, J.J. "Rapid targeted quantitation of protein overexpression with direct infusion shotgun proteome analysis (DISPA-PRM)." Analytical Chemistry 94,4, 1965–1973+ (2022). [DOI: 10.1021/acs.analchem.1c03243]

Ulbrich, T.C., Rivas-Ubach, A., Tiemann, L.K., Friesen, M.L. & Evans, S.E. "Plant root exudates and rhizosphere bacterial communities shift with neighbor context." Soil Biology and Biochemistry 172, 108753+ (2022). [DOI: 10.1016/j.soilbio.2022.108753]

Umana, G.E., Perez, J.M., Unda, F., Lin, C.-Y., Sener, C., Karlen, S.D., Mansfield, S.D., Eudes, A., Ralph, J., Donohue, T.J., et al. "Biological funneling of phenolics from transgenic plants engineered to express the bacterial 3-dehydroshikimate dehydratase (qsuB) gene." Frontiers in Chemical Engineering 4, 1036084+ (2022). [DOI: 10.3389/fceng.2022.1036084]

Unda, F., Mottiar, Y., Mahon, E.L., Karlen, S.D., Kim, K.H., Loque, D., Eudes, A., Ralph, J. & Mansfield, S.D. "A new approach to zip-lignin: 3,4-dihydroxybenzoate is compatible with lignification." New Phytologist 235,1, 234–246+ (2022). [DOI: 10.1111/nph.18136]

van Dijk, A.D.J., Shiu, S.-H. & de Ridder, D. "Editorial: artificial intelligence and machine learning applications in plant genomics and genetics." Frontiers in Artificial Intelligence 5, 959470+ (2022). [DOI: 10.3389/frai.2022.959470]

Vanacloig-Pedros, E., Fisher, K.J., Liu, L., Debrauske, D.J., Young, M.K.M., Place, M., Hittinger, C.T., Sato, T.K. & Gasch, A.P. "Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions." FEMS Yeast Research 21,1, foac036+ (2022). [DOI: 10.1093/femsyr/foac036]

VanWallendael, A., Benucci, G.M.N., da Costa, P.B., Fraser, L., Sreedasyam, A., Fritschi, F., Juenger, T.E., Lovell, J.T., Bonito, G. & Lowry, D.B. "Host genotype controls ecological change in the leaf fungal microbiome." PLOS Biology 20,8, e3001681+ (2022). [DOI: 10.1371/journal.pbio.3001681]

VanWallendael, A., Lowry, D.B. & Hamilton, J.A. "One hundred years into the study of ecotypes, new advances are being made through large-scale field experiments in perennial plant systems." Current Opinion in Plant Biology 66, 102152+ (2022). [DOI: 10.1016/j.pbi.2021.102152]