Publications

Book, A.J., Lewin, G.R., McDonald, B.R., Takasuka, T.E., Doering, D.T., Adams, A.S., Blodgett, J.A.V., Clardy, J., Raffa, K.F., Fox, B.G., et al. "Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity for the degradation of lignocellulose." Applied and Environmental Microbiology 80,15, 4692–4701+ (2014). [DOI: 10.1128/AEM.01133-14]

Book, A.J., Yennamalli, R.M., Takasuka, T.E., Currie, C.R., Phillips, G.N. & Fox, B.G. "Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases." Biotechnology for Biofuels 7,1, 109+ (2014). [DOI: 10.1186/1754-6834-7-109]

Calvey, C.H., Willis, L.B. & Jeffries, T.W. "An optimized transformation protocol for Lipomyces starkeyi." Current Genetics 60,3, 223–230+ (2014). [DOI: 10.1007/s00294-014-0427-0]

Cao, H., Walton, J.D., Brumm, P. & Phillips, G.N. "Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum." Journal of Biological Chemistry 289,37, 25624–25638+ (2014). [DOI: 10.1074/jbc.M114.583286]

Chen, J., John, R., Sun, G., McNulty, S., Normets, A., Xiao, J., Turner, M.G. & Franklin, J.F. "Chapter 6 - Carbon fluxes and storages in forests and landscapes." in Forest Landscapes and Global Change: Challenges for Research and Management. vol. XIII 139–166+ (Springer, 2014). [DOI: 10.1007/978-1-4939-0953-7]

Chiaramonti, D., Martelli, F., Balan, V. & Kumar, S. "Industrial initiatives towards lignocellulosic biofuel deployment: an assessment in US and EU." Chemical Engineering Transactions 37, 313–318+ (2014). [DOI: 10.3303/CET1437053]

Childs, K.L., Nandety, A., Hirsch, C.N., Góngora-Castillo, E., Schmutz, J., Kaeppler, S.M., Casler, M.D. & Buell, R. "Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass." The Plant Genome 7, 1–13+ (2014). [DOI: 10.3835/plantgenome2013.12.0041]

Cole, J.R. & Tiedje, J.M. "History and impact of RDP: a legacy from Carl Woese to microbiology." RNA Biology 11,3, 239–243+ (2014). [DOI: 10.4161/rna.28306]

Cole, J.R., Wang, Q., Fish, J.A., Chai, B., McGarrell, D.M., Sun, Y., Brown, T., Porras-Alfaro, A., Kuske, C.R. & Tiedje, J.M. "Ribosomal Database Project: data and tools for high throughput rRNA analysis." Nucleic Acids Research 42,D1, D633-D642+ (2014). [DOI: 10.1093/nar/gkt1244]

Collier, S.M., Ruark, M.D., Oates, L.G., Jokela, W.E. & Dell, C.J. "Measurement of greenhouse gas flux from agricultural soils using static chambers." Journal of Visualized Experiments 90, e52110+ (2014). [DOI: 10.3791/52110]

Dale, B. "Sobering numbers." Resource Magazine November/December 2014, 25+ (2014).

Dale, B.E., Anderson, J.E., Brown, R.C., Csonka, S., Dale, V.H., Herwick, G., Jackson, R.D., Jordan, N., Kaffka, S., Kline, K.L., et al. "Take a closer look: biofuels can support environmental, economic and social goals." Environmental Science & Technology 48,13, 7200–7203+ (2014). [DOI: 10.1021/es5025433]

Dale, B.E. & Kim, S. "Can the predictions of consequential life cycle assessment be tested in the real world? Comment on “Using Attributional Life Cycle Assessment to Estimate Climate-Change Mitigation...”." Journal of Industrial Ecology 18,3, 466–467+ (2014). [DOI: 10.1111/jiec.12151]

Dale, B.E. & Ong, R.G. "Design, implementation, and evaluation of sustainable bioenergy production systems." Biofuels, Bioproducts and Biorefining 8,4, 487–503+ (2014). [DOI: 10.1002/bbb.1504]

Deal, M.W., Xu, J., John, R., Zenone, T., Chen, J., Jasrotia, P., Kahmark, K., Bossenbroek, J. & Mayer, C. "Net primary production in three bioenergy crop systems following land conversion." Journal of Plant Ecology 7,5, 451–460+ (2014). [DOI: 10.1093/jpe/rtt057]

Deng, K., Takasuka, T.E., Heins, R., Cheng, X., Bergeman, L.F., Shi, J., Aschenbrener, R., Deutsch, S., Singh, S., Sale, K.L., et al. "Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS)." ACS Chemical Biology 9,7, 1470–1479+ (2014). [DOI: 10.1021/cb5000289]

Diehl, B.G., Watts, H.D., Kubicki, J.D., Regner, M.R., Ralph, J. & Brown, N.R. "Towards lignin-protein crosslinking: amino acid adducts of a lignin model quinone methide." Cellulose 21, 1395–1407+ (2014). [DOI: 10.1007/s10570-014-0181-y]

Evans, J., Kim, J., Childs, K.L., Vaillancourt, B., Crisovan, E., Nadety, A., Gerhardt, D.J., Richmond, T.A., Jeddeloh, J.A., Kaeppler, S.M., et al. "Nucleotide polymorphism and copy number variant detection using exome capture and next generation sequencing in the polyploidy grass Panicum virgatum." The Plant Journal 76,6, 993–1008+ (2014). [DOI: 10.1111/tpj.12601]

Gall, D.L., Kim, H., Lu, F., Donohue, T.J., Noguera, D.R. & Ralph, J. "Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway." Journal of Biological Chemistry 289,12, 8656–8667+ (2014). [DOI: 10.1074/jbc.M113.536250]

Gall, D.L., Ralph, J., Donohue, T.J. & Noguera, D.R. "A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers." Environmental Science & Technology 48,20, 12454–12463+ (2014). [DOI: 10.1021/es503886d]

Gao, D., Haarmeyer, C., Balan, V., Whitehead, T.A., Dale, B.E. & Chundawat, S.P. "Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass saccharification." Biotechnology for Biofuels 7, 175+ (2014). [DOI: 10.1186/s13068-014-0175-x]

Gao, X., Kumar, R., Singh, S., Simmons, B., Balan, V., Dale, B. & Wyman, C.E. "Comparison of enzymatic reactivity of corn stover solids prepared by dilute acid, AFEX™, and ionic liquid pretreatments." Biotechnology for Biofuels 7, 71+ (2014). [DOI: 10.1186/1754-6834-7-71]

Gardner, J.G., Crouch, L., Labourel, A., Forsberg, Z., Bukhman, Y.V., Vaaje-Kolstad, G., Gilbert, H.J. & Keating, D.H. "Systems biology defines the biological significance of redox-active proteins during cellulose degradation in an aerobic bacterium." Molecular Microbiology 94,5, 1121–1133+ (2014). [DOI: 10.1111/mmi.12821]

Gaskell, J., Marty, A., Mozuch, M., Kersten, P.J., BonDurant, S.S., Sabat, G., Azarpira, A., Ralph, J., Skyba, O., Mansfield, S.D., et al. "Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium." Applied and Environmental Microbiology 80,18, 5828–5835+ (2014). [DOI: 10.1128/AEM.01604-14.]

Gilmanov, T.G., Baker, J.M., Bernacchi, C.J., Billesbach, D.P., Burba, G.G., Castro, S., Chen, J., Eugster, W., Fischer, M.L., Gamon, J.A., et al. "Productivity and carbon dioxide exchange of leguminous crops: estimates from flux tower measurements." Agronomy Journal 106,2, 545–559+ (2014). [DOI: 10.2134/agronj2013.0270]