Publications

Bianchetti, C.M., Takasuka, T.E., Deutsch, S., Udell, H.S., Yik, E.J., Bergeman, L.F. & Fox, B.G. "Active site and laminarin binding in glycoside hydrolase family 55." Journal of Biological Chemistry 290,19, 11819–11832+ (2015). [DOI: 10.1074/jbc.M114.623579]

Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-J. & Mead, D.A. "Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 81+ (2015). [DOI: 10.1186/s40793-015-0075-0]

Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-J. & Mead, D.A. "Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath Hot Spring in Yellowstone National Park." BioEnergy Research 8, 1039–1045+ (2015). [DOI: 10.1007/s12155-015-9585-2]

Brumm, P.J., De Maayer, P., Mead, D.A. & Cowan, D.A. "Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies." Frontiers in Microbiology 6, 430+ (2015). [DOI: 10.3389/fmicb.2015.00430]

Brumm, P.J., Land, M.L. & Mead, D.A. "Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 73+ (2015). [DOI: 10.1186/s40793-015-0031-z]

Bukhman, Y.V., DiPiazza, N.W., Piotrowski, J., Shao, J., Halstead, A.G., Bui, M.D., Xie, E. & Sato, T.K. "Modeling microbial growth curves with GCAT." BioEnergy Research 8, 1022–1030+ (2015). [DOI: 10.1007/s12155-015-9584-3]

Caes, B.R., Teixeira, R.E., Knapp, K.G. & Raines, R.T. "Biomass to furanics: renewable routes to chemicals and fuels." ACS Sustainable Chemistry and Engineering 3,11, 2591–2605+ (2015). [DOI: 10.1021/acssuschemeng.5b00473]

Campioli, M., Vicca, S., Luyssaert, S., Bilcke, J., Ceschia, E., , Ciais, P., Fernández-Martínez, M., Malhi, Y., Obersteiner, M., et al. "Biomass production efficiency controlled by management in temperate and boreal ecosystems." Nature Geoscience 8, 843–846+ (2015). [DOI: 10.1038/ngeo2553]

Carpita, N.S., Ralph, J. & McCann, M. "The cell wall." in Biochemistry and Molecuar Biology of Plants, 2nd Edition. 45–110+ (Wiley, 2015).

Cass, C.L., Peraldi, A., Dowd, P.F., Mottiar, Y., Santoro, N., Karlen, S.D., Bukhman, Y.V., Foster, C.E., Thrower, N., Bruno, L.C., et al. "Effects of PHENYLALANINE AMMONIA LYASE (PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses in Brachypodium." Journal of Experimental Botany 66,14, 4317–4335+ (2015). [DOI: 10.1093/jxb/erv269]

Clowers, K.J., Heilberger, J., Piotrowski, J.S., Will, J.L. & Gasch, A.P. "Ecological and genetic barriers differentiate natural populations of Saccharomyces cerevisiae." Molecular Biology and Evolution 32,9, 2317–2327+ (2015). [DOI: 10.1093/molbev/msv112]

Clowers, K.J., Will, J.L. & Gasch, A.P. "A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae." Molecular Ecology 24,23, 5886–5898+ (2015). [DOI: 10.1111/mec.13439]

Coelho, M.A., Almeida, J.M.G.C.F., Hittinger, C.T. & Goncalves, P. "Draft genome sequence of Sporidiobolus salmonicolor CBS 6832, a red-pigmented basidiomycetous yeast." Genome Announcements 3,3, 300444–15+ (2015). [DOI: 10.1128/genomeA.00444-15]

Cornish, A.J., Green, R., Gärtner, K., Mason, S. & Hegg, E.L. "Charactization of hydrogen metabolism in the multicellular green alga Volvox carteri." PLOS ONE 10,4, e0125324+ (2015). [DOI: 10.1371/journal.pone.0125324]

Dale, B.E. & Holtzapple, M. "SBE Special Section: Lignocellulosic Biofuels – The Need for Biofuels." Chemical Engineering Progress Magazine 81,4, 57–69+ (2015).

del Rio, J.C., Lino, A.G., Colodette, J.L., Lima, C.F., Gutierrez, A., Martinez, A.T., Lu, F., Ralph, J. & Rencoret, J. "Differences in the chemical structure of the lignins from sugarcane bagasse and straw." Biomass and Bioenergy 81, 322–338+ (2015). [DOI: 10.1016/j.biombioe.2015.07.006]

Deng, K., Guenther, J.M., Gao, J., Bowen, B.P., Tran, H., Reyes-Ortiz, V., Cheng, X., Sathitsuksanoh, N., Heins, R., Takasuka, T.E., et al. "Development of a high throughput platform for screening glycoside hydrolases based on oxime-NIMS." Frontiers in Bioengineering and Biotechnology 3, 153+ (2015). [DOI: 10.3389/fbioe.2015.00153]

Deng, K., Takasuka, T.E., Bianchetti, C.M., Bergeman, L.F., Adam, P.D., Northen, T.R. & Fox, B.G. "Use of nanostructure initiator mass spectrometry to deduce selectivity of reaction in glycoside hydrolases." Frontiers in Bioengineering and Biotechnology 3, 165+ (2015). [DOI: 10.3389/fbioe.2015.00165]

Dickson, T.L. & Gross, K.L. "Can the results of biodiversity-ecosystem productivity studies be translated to bioenergy production?" PLOS ONE 10,9, e0135253+ (2015). [DOI: 10.1371/journal.pone.0135253]

Dima, O., Morreel, K., Vanholme, B., Kim, H., Ralph, J. & Boerjan, W. "Small glycosylated lignin oligomers are stored in Arabidopsis leaf vacuoles." The Plant Cell 27,3, 695–710+ (2015). [DOI: 10.1105/tpc.114.134643]

Egbendewe-Mondzozo, A., Swinton, S.M., Kang, S., Post, W.M., Binfield, J.C. & Thompson, W. "Bioenergy supply and environmental impacts on cropland: insights from multi-market forecasts in a Great Lakes subregional bioeconomic model." Applied Economic Perspectives and Policy 37,4, 602–618+ (2015). [DOI: 10.1093/aepp/ppu044]

Evans, J., Crisovan, E., Barry, K., Daum, C., Jenkins, J., Kunde-Ramamoorthy, G., Nandety, A., Ngan, C.Y., Vaillancourt, B., Wei, C.-L., et al. "Diversity and population structure of northern switchgrass as revealed through exome capture sequencing." The Plant Journal 84, 800–815+ (2015). [DOI: 10.1111/tpj.13041]

Foerster, J.M., Beissinger, T., de Leon, N. & Kaeppler, S. "Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.)." Theoretical and Applied Genetics 128,3, 529–538+ (2015). [DOI: 10.1007/s00122-014-2451-3]

Gelfand, I., Cui, M., Tang, J. & Robertson, P. "Short-term drought response of N2O and CO2 emissions from mesic agricultural soils in the US Midwest." Agriculture, Ecosystems & Environment 212, 127–133+ (2015). [DOI: 10.1016/j.agee.2015.07.005]

Gelfand, I. & Robertson, P. "Mitigation of greenhouse gases in agricultural ecosystems." in The Ecology of Agricultural Landscapes: Long-Term Research on the Path to Sustainability. 419–458+ (Oxford University Press, 2015). [DOI: isbn: 978-0-19-977335-0]