| Year | Publication | Keywords |
|---|---|---|
| 2025 | Min, K., Nuccio, E., Slessarev, E., Kan, M., McFarlane, K.J., Oerter, E., Jurusik, A., Sanford, G., Thelen, K.D., Pett-Ridge, J., et al. "Deep-rooted perennials alter microbial respiration and chemical composition of carbon in density fractions along soil depth profiles." Geoderma 455, 117202+ (2025). [DOI: 10.1016/j.geoderma.2025.117202] |
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| 2025 | Mishra, S., Kumar, V., Misra, J., P., A.K., Sah, B. & Lal, P.B. "Genetic tools for engineering Zymomonas mobilis, Cereibacter sphaeroides and Novosphingobium aromaticivorans to improve production of bioenergy compounds." Microbial Cell Factories 24,1, 239+ (2025). [DOI: 10.1186/s12934-025-02845-3] |
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| 2025 | Mottiar, Y., Tschaplinski, T.J., Ralph, J. & Mansfield, S.D. "Suppression of chorismate mutase 1 in hybrid poplar to investigate potential redundancy in the supply of lignin precursors." Plant Direct 9,3, e70053+ (2025). [DOI: 10.1002/pld3.70053] |
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| 2025 | Myers, K.S., Linz, A.M., Baumgart, L.A., Zhang, Y., Blaby, I., Mewalal, R., Ng, V., Noguera, D.R. & Donohue, T.J. "Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors." Microbiology Resource Announcements 14,8, e00260–25+ (2025). [DOI: 10.1128/mra.00260-25] |
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| 2025 | O’Neill, E.G., Lark, T.J., Xie, Y., Kim, S., Dale, B.E., Robertson, G.P., Basso, B. & Maravelias, C.T. "Available land for cellulosic biofuel production: a supply chain centered comparison." Environmental Research Letters 20,1, 014067+ (2025). [DOI: 10.1088/1748-9326/ada301] |
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| 2025 | Oliveira, D.M., Saleme, M. de L.S., Smith, R.A., Vangeel, T., Lima, M. de F., Chanoca, A.A., Mota, T.R., Vanhevel, Y., Coussens, G., Van Aelst, K., et al. "CRISPR/Cas9 editing of p-COUMAROYL-CoA:MONOLIGNOL TRANSFERASE 1 in maize alters phenolic metabolism, lignin structure, and lignin-first biomass processing." Trends in Biotechnology 43,5, 1166–1195+ (2025). [DOI: 10.1016/j.tibtech.2025.01.006] |
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| 2025 | Pandeya, P.R., Black, I.M., Karlen, S.D., Heiss, C., Tseng, Y.-C., Downie, B., Azadi, P. & Schendel, R.R. "Hempseed cell wall polysaccharides are dominated by linear xylans and cellulose: comprehensive structural profiling of ten cultivars of industrial hemp, Cannabis sativa L." Carbohydrate Polymers 361, 123635+ (2025). [DOI: 10.1016/j.carbpol.2025.123635] |
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| 2025 | Rajbangshi, J., Sener, C. & Van Lehn, R.C. "Effect of solvents on lignin-surface interactions via molecular dynamics." Journal of Physical Chemistry B 129,36, 9175–9189+ (2025). [DOI: 10.1021/acs.jpcb.5c02943] |
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| 2025 | Reed, D.E., Chu, H., Peter, B.G., Chen, J., Abraha, M., Amiro, B., Anderson, R.G., Arain, A., Arruda, P., Barron-Gafford, G.A., et al. "Network of networks: time series clustering of AmeriFlux sites." Agricultural and Forest Meteorology 372, 110686+ (2025). [DOI: 10.1016/j.agrformet.2025.110686] |
Sustainability |
| 2025 | Rencoret, J., Ralph, J. & del Rio, J.C. "cis-p-Coumarates acylate the lignin sidechain in grasses and other plants." Industrial Crops & Products 236, 121903+ (2025). [DOI: 10.1016/j.indcrop.2025.121903] |
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| 2025 | Vazquez, J.R., Trujillo, E., Wenger, Z., Botts, M., Coon, J.J. & Amador-Noguez, D. "Physiological and metabolic responses of Zymomonas mobilis to lignocellulosic hydrolysate." Microbiology Spectrum 13,10, e00610–25+ (2025). [DOI: 10.1128/spectrum.00610-25] |
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| 2025 | Rivett, E.D., Finders, C.M., Haslun, J.A., Gandhi, H., Kahle, M., Ädelroth P., Ostrom, P.H., Ostrom, N.E. & Hegg, E.L. "Isoptopic fractionation and kinetic isotope effects of a purified bacterial nitric oxide reductase (NOR)." Biochemistry 64,20, 4327–4340+ (2025). [DOI: 10.1021/acs.biochem.5c00417] |
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| 2025 | Rodriguez-Castro, L., Myers, K.S., Linz, A.M., Mettert, E.L., Camp, W., Kiley, P.J., Noguera, D.R. & Donohue, T.J. "Novosphingobium aromaticivorans LigR coordinates transcription of genes involved in metabolism of multiple types of aromatics." mSystems 10,12, e01469–25+ (2025). [DOI: 10.1128/msystems.01469-25] |
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| 2025 | Rodriguez-Castro, L., Myers, K.S., Noguera, D.R. & Donohue, T.J. "Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid." Microbiology Resource Announcements 14,9, e00264–25+ (2025). [DOI: 10.1128/mra.00264-25] |
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| 2025 | Sener, C., Timokhin, V.I., Hellinger, J., Ralph, J. & Karlen, S.D. "Pd/C promotes C–H bond activation and oxidation of p-hydroxybenzoate during hydrogenolysis of poplar." Nature Communications 16,1, 5259+ (2025). [DOI: 10.1038/s41467-025-60270-x] |
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| 2025 | Serrano, L.R., Mellors, S., Thompson, W., Lancaster, N.M., Robinson, M.L., Overmyer, K.A., Quarmby, S.T. & Coon, J.J. "SPE-CZE-MS quantifies zeptomole amounts of phosphorylated peptides." Journal of Proteome Research 24,6, 3049–3061+ (2025). [DOI: 10.1021/acs.jproteome.5c00194] |
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| 2025 | Shen, G., Guber, A., Khosrozadeh, S., Ghaderi, N., Kravchenko, A. & Bladgodatskaya, E. "Plant-microbial interplay for organic nitrogen mediated by functional specificity of root compartments." Rhizosphere 33, 101024+ (2025). [DOI: 10.1016/j.rhisph.2025.101024] |
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| 2025 | Silva, M.R., Paraíso F., Al-Oboudi, J., Abegg, M.A., Aires, A., Barros, K.O., Brito, P.H., Jarzyna, M., Sylvester, K., Langdon, Q.K., et al. "A taxogenomic view of the genus Torulaspora: an expansion from ten to twenty-two species." Persoonia 54,1, 265–283+ (2025). [DOI: 10.3114/persoonia.2025.54.08] |
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| 2025 | Singhal, R., Izquierdo, P., Ranaweera, T., Abá, K.S., Brown, B.N.I., Lehti-Shiu, M.D. & Shiu, S.-H. "Using supervised machine-learning approaches to understand abiotic stress tolerance and design resilient crops." Philosophical Transactions of the Royal Society B 380, 20240252+ (2025). [DOI: 10.1098/rstb.2024.0252] |
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| 2025 | Tejera-Nieves, M.D., Cordova, C., Sears, M., Thelen, K.D., Robertson, P. & Walker, B.J. "Switchgrass (Panicum virgatum) and miscanthus (Miscanthus × Giganteus) long-term yield patterns reveal consistent productivity declines." Global Change Biology Bioenergy 17,12, e70088+ (2025). [DOI: 10.1111/gcbb.70088] |
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| 2025 | Tian, Y., Kim, B., Pamukçu, I., Turumtay, E.A., Tan, A.H., Saini, V., Chavez, A.I., Tang, A., Su, A.Z., Baidoo, E.E.K., et al. "Engineered accumulation of protocatechuate in corn biomass to enhance biomanufacturing." ACS Sustainable Chemistry & Engineering 13,46, 20204–20214+ (2025). [DOI: 10.1021/acssuschemeng.5c09025] |
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| 2025 | Tran, P.M., O’Neill, E.G. & Maravelias, C.T. "Complexity reduction methods for large-scale spatially explicit biofuels network design." Industrial & Engineering Chemistry Research 64, 12724–12736+ (2025). [DOI: 10.1021/acs.iecr.5c00439] |
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| 2025 | VanWallendael, A., Wijewardana, C., Bonnette, J., Vormwald, L., Fritschi, F.B., Boe, A., Chambers, S., Mitchell, R.B., Rouquette, F.M., Jr., Wu, Y., et al. "Local adaptation of both plant and pathogen: an arms-race compromise in switchgrass rust." New Phytologist 248,3, 1527–1541+ (2025). [DOI: 10.1111/nph.70313] |
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| 2025 | Venkataraman, M., Infante, V., Sabat, G., Sanos-Giles, K., Ané, J.-M. & Pfleger, B.F. "A novel membrane-associated protein aids bacterial colonization of maize." ACS Synthetic Biology 14,1, 206–215+ (2025). [DOI: 10.1021/acssynbio.4c00489] |
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| 2025 | Wang, N., Takada, M., Sakamoto, S., Vanholme, R., Goeminne, G., Kim, H., Nagano, S., Takata, N., Kamimura, N., Uesugi, M., et al. "Effects of feruloyl-CoA 6’-hydroxylase 1 overexpression on lignin and cell wall characteristics in transgenic hybrid aspen." Frontiers in Plant Science 16, 1543168+ (2025). [DOI: 10.3389/fpls.2025.1543168] |
