Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2017	Martien, J.I. & Amador-Noguez, D. "Recent applications of metabolomics to advance microbial biofuel production." Current Opinion in Biotechnology 43, 118–126+ (2017). [DOI: 10.1016/j.copbio.2016.11.006] DOI Google Scholar	Conversion
2017	McClelland, D.J., Motagamwala, A.H., Li, Y., Rover, M.R., Wittrig, A.M., Wu, C., Buchanan, S., Brown, R.C., Ralph, J., Dumesic, J.A., et al. "Functionality and molecular weight distribution of red oak lignin before and after pyrolysis and hydrogenation." Green Chemistry 19,5, 1378–1389+ (2017). [DOI: 10.1039/c6gc03515a] DOI Google Scholar	Feedstocks, Conversion
2017	McDonald, B.R. & Currie, C.R. "Lateral gene transfer dynamics in the ancient bacterial genus Streptomyces." mBio 8,3, e00644–17+ (2017). [DOI: 10.1128/mBio.00644-17] DOI Google Scholar	Deconstruction
2017	Miesel, J.R., Jach-Smith, L.C., Renz, M.J. & Jackson, R.D. "Distribution of switchgrass (Panicum virgatum L.) aboveground biomass in response to nitrogen addition and across harvest dates." Biomass and Bioenergy 100, 74–83+ (2017). [DOI: 10.1016/j.biombioe.2017.03.012] DOI Google Scholar	Sustainability
2017	Mnich, E., Vanholme, R., Oyarce, P., Liu, S., Lu, F., Goeminne, G., Jørgensen, B., Motawie, M.S., Boerjan, W., Ralph, J., et al. "Degradation of lignin β-aryl ether units in Arabidopsis thaliana expressing LigD, LigF and LigG from Sphingomonas paucimobilis SYK-6." Plant Biotechnology Journal 15,5, 581–593+ (2017). [DOI: 10.1111/pbi.12655] DOI Google Scholar	Feedstocks
2017	Morais, C.G., Batista, T.M., Kominek, J., Borelli, B.M., Furtado, C., Moreira, R.G., Franco, G.R., Rosa, L.H., Fonseca, C., Hittinger, C.T., et al. "Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade." International Journal of Systematic and Evolutionary Microbiology 67,10, 3798–3805+ (2017). [DOI: 10.1099/ijsem.0.002186] DOI Google Scholar	Conversion
2017	Ng, R.T.L. & Maravelias, C.T. "Design of biofuel supply chains with variable regional depot and biorefinery locations." Renewable Energy 100, 90–102+ (2017). [DOI: 10.1016/j.renene.2016.05.009] DOI Google Scholar	Deconstruction
2017	Ng, R.T.L. & Maravelias, C.T. "Economic and energetic analysis of biofuel supply chains." Applied Energy 205, 1571–1582+ (2017). [DOI: 10.1016/j.apenergy.2017.08.161] DOI Google Scholar	Deconstruction
2017	Novo, M., Silvar, C., Merino, F., Martínez-Cortés, T., Lu, F., Ralph, J. & Pomar, F. "Deciphering the role of the phenylpropanoid metabolism in the tolerance of Capsicum annuum L. to Verticillium dahliae Kleb." Plant Science 258, 12–20+ (2017). [DOI: 10.1016/j.plantsci.2017.01.014] DOI Google Scholar	Feedstocks
2017	Oates, L.G., Read, H.W., Gutknecht, J.L.M., Duncan, D.S., Balser, T.C. & Jackson, R.D. "A lipid extraction and analysis method for characterizing soil microbes in experiments with many samples." Journal of Visualized Experiments 125, e55310+ (2017). [DOI: 10.3791/55310] DOI Google Scholar	Sustainability
2017	Ostrom, N.E. & Ostrom, P.H. "Mining the isotopic complexity of nitrous oxide: a review of challenges and opportunities." Biogeochemistry 132,3, 359–372+ (2017). [DOI: 10.1007/s10533-017-0301-5] DOI Google Scholar	Deconstruction
2017	Pateraki, I., Andersen-Ranberg, J., Jensen, N.B., Wubshet, S.G., Heskes, A.M., Forman, V., Hallström, B., Hamberger, B., Motawia, M.S., Olsen, C.E., et al. "Total biosynthesis of the cyclic AMP booster forskolin from Coleus forskohlii." eLife 6, e23001+ (2017). [DOI: 10.7554/eLife.23001] DOI Google Scholar	Feedstocks
2017	Peris, D., Moriarty, R.V., Alexander, W.G., Baker, E., Sylvester, K., Sardi, M., Langdon, Q.K., Libkind, D., Wang, Q.-M., Bai, F.-Y., et al. "Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production." Biotechnology for Biofuels 10, 78+ (2017). [DOI: 10.1186/s13068-017-0763-7] DOI Google Scholar	Conversion
2017	Proemse, B.C., Murray, A.E., Schallenberg, C., McKiernan, B., Glazer, B.T., Young, S.A., Ostrom, N.E., Bowie, A.R., Wieser, M.E., Kenig, F., et al. "Iron cycling in the anoxic cryo-ecosystem of Antarctic Lake Vida." Biogeochemistry 134, 17–27+ (2017). [DOI: 10.1007/s10533-017-0346-5] DOI Google Scholar	Deconstruction
2017	Qureshi, A.S., Zhang, J., Sousa, L. da C. & Bao, J. "Antibacterial peptide secreted by Pediococcus acidilactici enables efficient cellulosic open L-lactic acid fermentation." ACS Sustainable Chemistry & Engineering 5,10, 9254–9262+ (2017). [DOI: 10.1021/acssuschemeng.7b02212] DOI Google Scholar	Deconstruction
2017	Robertson, P., Hamilton, S.K., Barham, B.L., Dale, B.E., Izaurralde, C., Jackson, R.D., Landis, D.A., Swinton, S.M., Thelen, K.D. & Tiedje, J.M. "Cellulosic biofuel contributions to a sustainable energy future: choices and outcomes." Science 356,6345, pii: eaal2324+ (2017). [DOI: 10.1126/science.aal2324] DOI Google Scholar	Sustainability
2017	Rosenheim, J.A. & Gratton, C. "Ecoinformatics (big data) for agricultural entomology: pitfalls, progress, and promise." Annual Review of Entomology 62, 399–417+ (2017). [DOI: 10.1146/annurev-ento-031616-035444] DOI Google Scholar	Sustainability
2017	Sakai, S. & Rothamer, D.A. "Effect of ethanol blending on particulate formation from premixed combustion in spark-ignition engines." Fuel 196, 154–168+ (2017). [DOI: 10.1016/j.fuel.2017.01.070] DOI Google Scholar	Conversion
2017	Saleme, M.L.S., Cesarino, I., Vargas, L., Kim, H., Vanholme, R., Goeminne, G., Van Acker, R., Fonseca, F.C.A., Pallidis, A., Voorend, W., et al. "Silencing CAFFEOYL SHIKIMATE ESTERASE affects lignification and improves saccharification in poplar." Plant Physiology 175,3, 1040–1057+ (2017). [DOI: 10.1104/pp.17.00920] DOI Google Scholar	Feedstocks
2017	Sanford, G.R., Oates, L.G., Roley, S.S., Duncan, D.S., Jackson, R.D., Robertson, P. & Thelen, K.D. "Biomass production a stronger driver of cellulosic ethanol yield than biomass quality." Agronomy Journal 109,5, 1911–1922+ (2017). [DOI: 10.2134/agronj2016.08.0454] DOI Google Scholar	Sustainability
2017	Sardi, M. & Gasch, A.P. "Incorporating comparative genomics into the design-test-learn cycle of microbial strain engineering." FEMS Yeast Research 17,5, fox042+ (2017). [DOI: 10.1093/femsyr/fox042] DOI Google Scholar	Conversion
2017	Sarks, C., Jin, M., Balan, V. & Dale, B.E. "Fed-batch hydrolysate addition and cell separation by settling in high cell density lignocellulosic ethanol fermentations on AFEX™ corn stover in the Rapid Bioconversion with Integrated recycling Technology process." Journal of Industrial Microbiology & Biotechnology 144,9, 1261–1272+ (2017). [DOI: 10.1007/s10295-017-1949-5] DOI Google Scholar	Deconstruction
2017	Shade, A., Jacques, M.-A. & Barret, M. "Ecological patterns of seed microbiome diversity, transmission, and assembly." Current Opinion in Microbiology 37, 15–22+ (2017). [DOI: 10.1016/j.mib.2017.03.010] DOI Google Scholar	Sustainability
2017	Shen, X.-X., Hittinger, C.T. & Rokas, A. "Contentious relationships in phylogenomic studies can be driven by a handful of genes." Nature Ecology and Evolution 1, 0126+ (2017). [DOI: 10.1038/s41559-017-0126] DOI Google Scholar	Conversion
2017	Singh, R., Hu, J., Regner, M.R., Round, J.W., Ralph, J., Saddler, J.N. & Eltis, L.D. "Enhanced delignification of steam-pretreated poplar by a bacterial laccase." Scientific Reports 7, 42121+ (2017). [DOI: 10.1038/srep42121] DOI Google Scholar	Feedstocks