Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2014	Osterholz, W.R., Kucharik, C.J., Hedtcke, J.L. & Posner, J.L. "Seasonal nitrous oxide and methane fluxes from grain- and forage-based production systems in Wisconsin, USA." Journal of Environmental Quality 43,6, 1833-1843+ (2014). [DOI: 10.2134/jeq2014.02.0077] DOI Google Scholar	Sustainability
2014	Palmer, M.M., Forrester, J.A., Rothstein, D.E. & Mladenoff, D.J. "Conversion of open lands to short-rotation woody biomass crops: site variability affects nitrogen cycling and N2O fluxes in the US Northern Lake States." Global Change Biology – Bioenergy 6,4, 450-464+ (2014). [DOI: 10.1111/gcbb.12069] DOI Google Scholar	Sustainability
2014	Parreiras, L.S., Breuer, R.J., Narasimhan, R.A., Higbee, A.J., LaReau, A., Tremaine, M., Qin, L., Willis, L.B., Bice, B.D., Bonfert, B.L., et al. "Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover." PLOS ONE 9,9, (2014). [DOI: 10.1371/journal.pone.0107499] DOI Google Scholar	Deconstruction, Conversion
2014	Peris, D., Sylvester, K., Libkind, D., Goncalves, P., Sampaio, J.P., Alexander, W.G. & Hittinger, C.T. "Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids." Molecular Ecology 23,8, 2031-2045+ (2014). [DOI: 10.1111/mec.12702] DOI Google Scholar	Conversion
2014	Peterson, A.C., Hauschild, J.-P.P., Quarmby, S.T., Krumwiede, D., Lange, O., Lemke, R.A., Grosse-Coosmann, F., Horning, S., Donohue, T.J., Westphall, M.S., et al. "Development of a GC/Quadrupole-Orbitrap mass spectrometer, Part I: Design and characterization." Analytical Chemistry 86,20, 10036-10043+ (2014). [DOI: 10.1021/ac5014767] DOI Google Scholar	Conversion
2014	Petrik, D.L., Karlen, S.D., Cass, C.L., Padmakshan, D., Lu, F., Liu, S., Le Bris, P., Antelme, S., Santoro, N., Wilkerson, C.G., et al. "p-Coumaroyl-CoA:monolignol transferase (PMT) acts specifically in the lignin biosynthetic pathway in Brachypodium distachyon." The Plant Journal 77,5, 713-726+ (2014). [DOI: 10.1111/tpj.12420] DOI Google Scholar	Feedstocks
2014	Piotrowski, J.S., Zhang, Y., Bates, D.M., Keating, D.H., Sato, T.K., Ong, I.M. & Landick, R. "Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors." Frontiers in Microbiology 5, 90+ (2014). [DOI: 10.3389/fmicb.2014.00090] DOI Google Scholar	Conversion
2014	Pryor, S.C., Scavia, D., Downer, C., Gaden, M., Iverson, L., Nordstrom, R., Patz, J. & Robertson, P. "Chapter 18: Midwest." in Climate Change Impacts in the United States: The Third National Climate Assessment. 418-440+ (U.S. Global Change Research Program, 2014). [DOI: 10.7930/J0J1012N] DOI Google Scholar	Sustainability
2014	Rahimi, A., Ulbrich, A., Coon, J.J. & Stahl, S.S. "Formic-acid-induced depolymerization of oxidized lignin to aromatics." Nature 515,7526, 249-252+ (2014). [DOI: 10.1038/nature13867] DOI Google Scholar	Conversion
2014	Ream, T., Woods, D., Schwartz, C., Sanabria, C., Mahoy, J., Walters, E., Kaeppler, H. & Amasino, R. "Interaction of photoperiod and vernalization determine flowering time of Brachypodium distachyon." Plant Physiology 164,2, 694-709+ (2014). [DOI: 10.1104/pp.113.232678] DOI Google Scholar	Feedstocks
2014	Riley, R.W., Salamova, A.A., Brown, D.W., Nagy, L.G., Floudas, D., Held, B.W., Levasseur, A., Lombard, V., Morin, E., Otillar, R., et al. "Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white rot/brown rot paradigm for wood decay fungi." Proceedings of the National Academy of Sciences of the United States of America 111,27, 9923-9928+ (2014). [DOI: 10.1073/pnas.1400592111] DOI Google Scholar	Deconstruction
2014	Robertson, P. "Soil greenhouse gas emissions and their mitigation." in The Encyclopedia of Agriculture and Food Systems. 185-196+ (Academic Press, 2014). [DOI: 10.1016/B978-0-444-52512-3.00097-8] DOI Google Scholar	Sustainability
2014	Robertson, P., Grace, P.R., Izaurralde, C., Parton, W.P. & Zhang, X. "Correspondence: CO2 emissions from crop residue-derived biofuels." Nature Climate Change 4,11, 933-934+ (2014). [DOI: 10.1038/nclimate2402] DOI Google Scholar	Sustainability
2014	Sahajpal, R., Zhang, X., Izaurralde, R.C., Gelfand, I. & Hurtt, G.C. "Identifying representative crop rotation patterns and grassland loss in the US Western Corn Belt." Computers and Electronics in Agriculture 108, 173-182+ (2014). [DOI: 10.1016/j.compag.2014.08.005] DOI Google Scholar	Sustainability
2014	Sarks, C., Jin, M., Sato, T.K., Balen, V. & Dale, B.E. "Studying the rapid bioconversion of lignocellulosic sugars into ethanol using high cell density fermentations with cell recycle." Biotechnology for Biofuels 7, 73+ (2014). [DOI: 10.1186/1754-6834-7-73] DOI Google Scholar	Deconstruction, Conversion
2014	Sato, T.K., Liu, T., Parreiras, L.S., Williams, D.L., Wohlbach, D.J., Bice, B.D., Ong, I.S., Breuer, R.J., Qin, L., Busalacchi, D., et al. "Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass." Applied and Environmental Microbiology 80,2, 540-554+ (2014). [DOI: 10.1128/AEM.01885-13] DOI Google Scholar	Deconstruction, Conversion
2014	Schuetz, M., Benske, A., Smith, R.A., Watanabe, Y., Tobimatsu, Y., Ralph, J., Demura, T., Ellis, B. & Samuels, L. "Laccases direct lignification in the discrete secondary cell wall domains of protoxylem." Plant Physiology 166,2, 798-807+ (2014). [DOI: 10.1104/pp.114.245597] DOI Google Scholar	Feedstocks
2014	Sekhon, R.S., Hirsch, C.N., Childs, K.L., Breitzman, M.W., Kell, P., Duvick, S., Spalding, E.P., Buell, R., de Leon, N. & Kaeppler, S. "Phenotypic and transcriptional analysis of divergently selected maize populations reveals the role of developmental timing in seed size determination." Plant Physiology 165, 658-669+ (2014). [DOI: 10.1104/pp.114.235424] DOI Google Scholar	Feedstocks
2014	Shcherbak, I., Millar, N. & Robertson, P. "Global metaanalysis of the nonlinear response of soil nitrous oxide (N2O) emissions to fertilizer nitrogen." Proceedings of the National Academy of Sciences of the United States of America 111,25, 9199-9204+ (2014). [DOI: 10.1073/pnas.1322434111] DOI Google Scholar	Sustainability
2014	Shcherbak, I. & Robertson, P. "Determining the diffusivity of nitrous oxide in soil using in situ tracers." Soil Science Society of America Journal 78,1, 79-88+ (2014). [DOI: 10.2136/sssaj2013.05.0181] DOI Google Scholar	Sustainability
2014	Skevas, T., Swinton, S.M., Meehan, T.D., Kim, T.N., Gratton, C. & Egbendewe-Mondzozo, A. "Integrating agricultural pest biocontrol into forecasts of energy biomass production." Ecological Economics 106, 195-203+ (2014). [DOI: 10.1016/j.ecolecon.2014.07.027] DOI Google Scholar	Sustainability
2014	Sundin, L., Vanholme, R., Geerinck, J., Goeminne, G., Hofer, R., Kim, H., Ralph, J. & Boerjan, W. "Mutation of the inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 alters lignin composition and improves saccharification." Plant Physiology 166,4, 1956-1971+ (2014). [DOI: 10.1104/pp.114.245548] DOI Google Scholar	Feedstocks
2014	Syswerda, S.P. & Robertson, G.P. "Ecosystem services along a management gradient in Michigan (USA) cropping systems." Agriculture, Ecosystems & Environment 189, 28-35+ (2014). [DOI: 10.1016/j.agee.2014.03.006] DOI Google Scholar	Sustainability
2014	Takasuka, T.E., Acheson, J.F., Bianchetti, C.M., Prom, B.M., Bergeman, L.F., Book, A.J., Currie, C.R. & Fox, B.G. "Biochemical properties and atomic resolution structure of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E." PLOS ONE 9,4, (2014). [DOI: 10.1371/journal.pone.0094166] DOI Google Scholar	Deconstruction
2014	Takasuka, T.E., Bianchetti, C.M., Tobimatsu, Y., Bergeman, L.F., Ralph, J. & Fox, B.G. "Structure-guided analysis of catalytic specificity of the abundantly secreted chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E." Proteins 82,7, 1245-1257+ (2014). [DOI: 10.1002/prot.24491] DOI Google Scholar	Feedstocks, Deconstruction