Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2013	Smith, S.L., Thelen, K.D. & MacDonald, S.J. "Yield and quality analyses of bioenergy crops grown on a regulatory brownfield." Biomass and Bioenergy 49, 123-130+ (2013). [DOI: 10.1016/j.biombioe.2012.12.017] DOI Google Scholar	Sustainability
2013	Takasuka, T.E., Book, A.J., Lewin, G.R., Currie, C.R. & Fox, B.G. "Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces." Scientific Reports 3, 1030+ (2013). [DOI: 10.1038/srep01030] DOI Google Scholar	Deconstruction
2013	Tjellstrom, H., Strawsine, M., Silva, J., Cahoon, E.B. & Ohlrogge, J.B. "Disruption of plastid acyl:acyl carrier protein synthetases increases medium chain fatty acid accumulation in seeds of transgenic Arabidopsis." FEBS Letters 587,7, 936-42+ (2013). [DOI: 10.1016/j.febslet.2013.02.021] DOI Google Scholar	Feedstocks
2013	Tobimatsu, Y., Chen, F., Nakashima, J., Escamilla-Treviño, L.L., Jackson, L., Dixion, R.A. & Ralph, J. "Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl lignins in plant seeds." The Plant Cell 25,7, 2587-2600+ (2013). [DOI: 10.1105/tpc.113.113142] DOI Google Scholar	Feedstocks
2013	Tobimatsu, Y., Wagner, A., Donaldson, L., Mitra, P., Niculeas, C., Dima, O., Kim, J.I., Anderson, N., Loque, D., Boerjan, W., et al. "Visualization of plant cell wall lignification using fluorescence-tagged monolignols." The Plant Journal 76,3, 357-366+ (2013). [DOI: 10.1111/tpj.12299] DOI Google Scholar	Feedstocks
2013	Troncoso-Ponce, M.A., Cao, X., Yang, Z. & Ohlrogge, J.B. "Lipid turnover during senescence." Plant Science 205-206, 13-19+ (2013). [DOI: 10.1016/j.plantsci.2013.01.004] DOI Google Scholar	Feedstocks
2013	Vanholme, B., Cesarino, I., Geert, G., Kim, H., Marroni, F., Van Acker, R., Vanholme, R., Morreel, K., Ivens, B., Pinosio, S., et al. "Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study." New Phytologist 198,3, 765-776+ (2013). [DOI: 10.1111/nph.12179] DOI Google Scholar	Feedstocks
2013	Vanholme, R., Cesarino, I., Rataj, K., Xiao, Y., Sundin, L., Goeminne, G., Kim, H., Cross, J., Morreel, K., Araujo, P., et al. "Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis." Science 341, 1103-1106+ (2013). [DOI: 10.1126/science.1241602] DOI Google Scholar	Feedstocks
2013	Vismeh, R., Humpula, J.F., Chundawat, S.P.S., Balan, V., Dale, B.E. & Jones, D. "Profiling of soluble neutral oligosaccharides from treated biomass using solid phase extraction and LC-TOF MS." Carbohydrate Polymers 94,2, 791-799+ (2013). [DOI: 10.1016/j.carbpol.2013.02.005] DOI Google Scholar	Deconstruction
2013	Vismeh, R., Lu, F., Chundawat, S.P.S., Humpula, J.F., Azarpira, A., Balan, V., Dale, B.E., Ralph, J. & Jones, D. "Profiling of diferulates (plant cell wall cross-linkers) using ultrahigh-performance liquid chromatography-tandem mass spectrometry." Analyst 138,21, 6683-6692+ (2013). [DOI: 10.1039/C3AN36709F] DOI Google Scholar	Feedstocks, Deconstruction
2013	Wang, D., Hakim, S.H., Alonso, D.M. & Dumesic, J.A. "A highly selective route to linear alpha olefins from biomass-derived lactones and unsaturated acids." Chemical Communications 49,63, 7040-7042+ (2013). [DOI: 10.1039/c3cc43587c] DOI Google Scholar	Conversion
2013	Wang, D., Osmundsen, C.M., Taarning, E. & Dumesic, J.A. "Selective production of aromatics from alkylfurans over solid acid catalysts." ChemCatChem 5,7, 2044-2050+ (2013). [DOI: 10.1002/cctc.201200757] DOI Google Scholar	Conversion
2013	Wang, Q., Quensen, J.F., Fish, J.A., Lee, T.K., Sun, Y., Tiedje, J.M. & Cole, J.R. "Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool." mBio 4,5, (2013). [DOI: 10.1128/mBio.00592-13] DOI Google Scholar	Sustainability
2013	Williams, C.L., Charland, P., Radloff, G., Sample, D. & Jackson, R.D. "Grass-shed: place and process for catalyzing perennial grass bioeconomies and their potential multiple benefits." Journal of Soil and Water Conservation 68,6, 141A-146A+ (2013). [DOI: 10.2489/jswc.68.6.141A] DOI Google Scholar	Sustainability
2013	Youngquist, T., Rose, J.P. & Pfleger, B.F. "Free fatty acid production in Escherichia coli under phosphate-limited conditions." Applied Microbiology and Biotechnology 97,11, 5149-59+ (2013). [DOI: 10.1007/s00253-013-4911-0] DOI Google Scholar	Conversion
2013	Youngquist, T., Schumacher, M.H., Rose, J.P., Raines, T.C., Politz, M.C., Copeland, M.F. & Pfleger, B.F. "Production of medium chain length fatty alcohols from glucose in Escherichia coli." Metabolic Engineering 20, 177-186+ (2013). [DOI: 10.1016/j.ymben.2013.10.006] DOI Google Scholar	Conversion
2013	Zenone, T., Gelfand, I., Chen, J., Hamilton, S.K. & Robertson, P. "From set-aside grassland to annual and perennial cellulosic biofuel crops: effects of land use change on carbon balance." Agricultural and Forest Meteorology 182-183, 1-12+ (2013). [DOI: 10.1016/j.agrformet.2013.07.015] DOI Google Scholar	Sustainability
2013	Zhang, X., Beeson, P., Link, R., Manowitz, D., Izaurralde, R.C., Sadeghi, A., Thomson, A.M., Sahajpal, R., Sinivasan, R. & Arnold, J.G. "Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python." Environmental Modelling & Software 46, 208-218+ (2013). [DOI: 10.1016/j.envsoft.2013.03.013] DOI Google Scholar	Sustainability
2013	Zhang, X., Izaurralde, C., Arnold, J.G., Williams, J.R. & Sinivasan, R. "Modifying the Soil and Water Assessment Tool to simulate cropland carbon flux: model development and initial evaluation." Science of the Total Environment 463-464, 810-822+ (2013). [DOI: 10.1016/j.scitotenv.2013.06.056] DOI Google Scholar	Sustainability
2013	Zhao, Q., Tobimatsu, Y., Zhou, R., Pattathil, S., Gallego-Giraldo, L., Fu, C., Jackson, L.A., Hahn, M.G., Kim, H., Ralph, J., et al. "Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula." Proceedings of the National Academy of Sciences of the United States of America 110,33, 13660-13665+ (2013). [DOI: 10.1073/pnas.1312234110] DOI Google Scholar	Feedstocks
2013	Zhu, Y., Regner, M., Lu, F., Kim, H., Mohammadi, A., Pearson, T.J. & Ralph, J. "Preparation of monolignol γ-acetate, γ-p-hydroxycinnamate, and γ-p-hydroxybenzoate conjugates: selective deacylation of phenolic acetates with hydrazine acetate." RSC Advances 3,44, 21964-21971+ (2013). [DOI: 10.1039/C3RA42818D] DOI Google Scholar	Feedstocks
2012	Agnew, D.E., Stevermer, A.K., Youngquist, T. & Pfleger, B.F. "Engineering Escherichia coli for production of C12-C14 polyhydroxyalkanoate from glucose." Metabolic Engineering 14,6, 705-13+ (2012). [DOI: 10.1016/j.ymben.2012.08.003] DOI Google Scholar	Conversion
2012	Allen, D.K., Laclair, R.W., Ohlrogge, J.B. & Shachar-Hill, Y. "Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments." Plant, Cell & Environment 35, 1232-1244+ (2012). [DOI: 10.1111/j.1365-3040.2012.02485.x] DOI Google Scholar	Feedstocks
2012	Alonso, D.M., Wettstein, S.G. & Dumesic, J.A. "Bimetallic catalysts for upgrading of biomass to fuels and chemicals." Chemical Society Reviews 41,24, 8075-8098+ (2012). [DOI: 10.1039/C2CS35188A] DOI Google Scholar	Conversion
2012	Aylward, F.O., Burnum, K.E., Scott, J.J., Suen, G., Tringe, S.G., Adams, S.M., Barry, K.W., Nicora, C.D., Piehowski, P.D., Purvine, S.O., et al. "Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens." The International Society for Microbial Ecology Journal 6, 1688-7101+ (2012). [DOI: 10.1038/ismej.2012.10] DOI Google Scholar	Deconstruction