Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	Langdon, Q.K., Peris, D., Kyle, B. & Hittinger, C.T. "sppIDer: a species identification tool to investigate hybrid genomes with high-throughput sequencing." Molecular Biology and Evolution 35,11, 2835-2849+ (2018). [DOI: 10.1093/molbev/msy166] DOI Google Scholar	Conversion
2018	Lapierre, C., Voxeur, A., Karlen, S.D., Helm, R.F. & Ralph, J. "Evaluation of feruloylated and p-coumaroylated arabinosyl units in grass arabinoxylans by acidolysis in dioxane/methanol." Journal of Agricultural and Food Chemistry 66,21, 5418-5424+ (2018). [DOI: 10.1021/acs.jafc.8b01618] DOI Google Scholar	Feedstocks
2018	Lettow, M.C., Brudvig, L.A., Bahlai, C.A., Gibbs, J., Jean, R.P. & Landis, D.A. "Bee community responses to a gradient of oak savanna restoration practices." Restoration Ecology 26,5, 882-890+ (2018). [DOI: 10.1111/rec.12655] DOI Google Scholar	Sustainability
2018	Li, M., Yan, G., Bhalla, A., Maldonado-Pereira, L., RUssell, P.R., Ding, S.-Y., Mullet, J.E. & Hodge, D.B. "Physical fractionation of sweet sorghum and forage/energy sorghum for optimal processing in a biorefinery." Industrial Crops and Products 124, 607-616+ (2018). [DOI: 10.1016/j.indcrop.2018.07.002] DOI Google Scholar	Feedstocks
2018	Li, N., Li, Y., Yoo, C.G., Yang, X., Lin, X., Ralph, J. & Pan, X. "An uncondensed lignin depolymerized in the solid state and isolated from lignocellulosic biomass: a mechanistic study." Green Chemistry 20,18, 4224-4235+ (2018). [DOI: 10.1039/C8GC00953H] DOI Google Scholar	Feedstocks
2018	Li, Y., Shuai, L., Kim, H., Motagamwala, A.H., Mobley, J.K., Yue, F., Tobimatsu, Y., Havkin-Frenkel, D., Chen, F., Dixon, R.A., et al. "An “ideal lignin” facilitates full biomass utilization." Science Advances 4,9, (2018). [DOI: 10.1126/sciadv.aau2968] DOI Google Scholar	Feedstocks
2018	Lomax, A., Woods, D.P., Dong, Y., Bouché, F., Rong, Y., Mayer, K.S., Zhong, X. & Amasino, R.M. "An ortholog of CURLY LEAF/ENHANCER OF ZESTE like-1 is required for proper flowering in Brachypodium distachyon." The Plant Journal 93,5, 871-882+ (2018). [DOI: 10.1111/tpj.13815] DOI Google Scholar	Feedstocks
2018	Lovell, J.T., Jenkins, J., Lowry, D.B., Mamidi, S., Sreedasyam, A., Weng, X., Barry, K., Bonnette, J., Campitelli, B., Daum, C., et al. "The genomic landscape of molecular responses to natural drought stress in Panicum hallii." Nature Communications 9,1, 5213+ (2018). [DOI: 10.1038/s41467-018-07669-x] DOI Google Scholar	Sustainability
2018	MacGilvray, M.E., Shishkova, E., Chasman, D., Place, M., Gitter, A., Coon, J.J. & Gasch, A.P. "Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response." PLOS Computational Biololgy 13,5, (2018). [DOI: 10.1371/journal.pcbi.1006088] DOI Google Scholar	Conversion
2018	Mackelprang, R., Grube, A.M., Lamendella, R., Jesus, E. da C., Copeland, A., Liang, C., Jackson, R.D., Rice, C.W., Kapucija, S., Parsa, B., et al. "Microbial community structure and functional potential in cultivated and native tallgrass prairie soils of the midwestern United States." Frontiers in Microbiology 9, 1775+ (2018). [DOI: 10.3389/fmicb.2018.01775] DOI Google Scholar	Sustainability
2018	McCormick, R.F., Truong, S.K., Sreedasyam, A., Jenkins, J., Shu, S., Sims, D., Kennedy, M., Amirebrahimi, M., Weers, B.D., McKinley, B., et al. "The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization." The Plant Journal 93,2, 338-354+ (2018). [DOI: 10.1111/tpj.13781] DOI Google Scholar	Feedstocks
2018	McDaniel, E.A., Stuecker, T.N., Veluvolu, M., Gasch, A.P. & Lewis, J.A. "Independent mechanisms for acquired salt tolerance versus growth resumption induced by mild ethanol pretreatment in Saccharomyces cerevisiae." mSphere 3,6, (2018). [DOI: 10.1128/mSphere.00574-18] DOI Google Scholar	Conversion
2018	McKinley, B.A., Casto, A.L., Rooney, W.L. & Mullet, J.E. "Developmental dynamics of stem starch accumulation in Sorghum bicolor." Plant Direct 2,8, (2018). [DOI: 10.1002/pld3.74] DOI Google Scholar	Feedstocks
2018	McKinley, B.A., Olson, S.N., Ritter, K.B., Herb, D.W., Karlen, S.D., Lu, F., Ralph, J., Rooney, W.L. & Mullet, J.E. "Variation in energy sorghum hybrid TX08001 biomass composition and lignin chemistry during development under irrigated and non-irrigated field conditions." PLOS ONE 13,4, (2018). [DOI: 10.1371/journal.pone.0195863] DOI Google Scholar	Feedstocks
2018	Mellmer, M.A., Sanpitakseree, C., Demir, B., Bai, P., Ma, K., Neurock, M. & Dumesic, J.A. "Solvent-enabled control of reactivity for liquid-phase reactions of biomass-derived compounds." Nature Catalysis 1, 199-207+ (2018). [DOI: 10.1038/s41929-018-0027-3] DOI Google Scholar	Conversion
2018	Meyer, J.R., Waghmode, S.B., He, J., Gao, Y., Hoole, D., Sousa, L. da C., Balan, V. & Foston, M.B. "Isolation of lignin from Ammonia Fiber Expansion (AFEX) pretreated biorefinery waste." Biomass and Bioenergy 119, 446-455+ (2018). [DOI: 10.1016/j.biombioe.2018.09.017] DOI Google Scholar	Deconstruction
2018	Mokomele, T., Sousa, L. da C., Balan, V., van Rensburg, E., Dale, B.E. & Görgens, J.F. "Ethanol production potential from AFEX™ and steam-exploded sugarcane residues for sugarcane biorefineries." Biotechnology for Biofuels 11,1, 127+ (2018). [DOI: 10.1186/s13068-018-1130-z] DOI Google Scholar	Deconstruction
2018	Mokomele, T., Sousa, L. da C., Bals, B., Balan, V., Goosen, N., Dale, B.E. & Görgens, J.F. "Using steam explosion or AFEX™ to produce animal feeds and biofuel feedstocks in a biorefinery based on sugarcane residues." Biofuels, Bioproducts and Biorefining 12,6, 978-996+ (2018). [DOI: 10.1002/bbb.1927] DOI Google Scholar	Deconstruction
2018	Motagamwala, A.H., Won, W., Sener, C., Alonso, D.M., Maravelias, C.T. & Dumesic, J.A. "Toward biomass-derived renewable plastics: production of 2,5-furandicarboxylic acid from fructose." Science Advances 4, (2018). [DOI: 10.1126/sciadv.aap9722] DOI Google Scholar	Conversion
2018	Ng, R.T.L., Kurniawan, D., Wang, H., Mariska, B., Wu, W. & Maravelias, C.T. "Integrated framework for designing spatially explicit biofuel supply chains." Applied Energy 216, 116-131+ (2018). [DOI: 10.1016/j.apenergy.2018.02.077] DOI Google Scholar	Deconstruction
2018	Tsuji, Y., Takata, N., Sakamoto, S., Nakagawa-Izumi, A., Taniguchi, T., Ralph, J., Mitsuda, N. & Kajita, S. "Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis." Physiologia Plantarum 163,2, 170-182+ (2018). [DOI: 10.1111/ppl.12684] DOI Google Scholar	Feedstocks
2018	Nutting, J.E., Rafiee, M. & Stahl, S.S. "Tetramethylpiperidine N-Oxyl (TEMPO), phthalimide N-Oxyl (PINO), and related N-Oxyl species: electrochemical properties and their use in electrocatalytic reactions." Chemical Reviews 118,9, 4834-4885+ (2018). [DOI: 10.1021/acs.chemrev.7b00763] DOI Google Scholar	Deconstruction
2018	Ong, R.G., Shinde, S., Sousa, L. da C. & Sanford, G.R. "Pre-senescence harvest of switchgrass inhibits xylose utilization by engineered yeast." Frontiers in Energy Research 6, 52+ (2018). [DOI: 10.3389/fenrg.2018.00052] DOI Google Scholar	Deconstruction, Sustainability
2018	Opulente, D.A., Rollinson, E.J., Bernick-Roehr, C., Hulfachor, A.B., Rokas, A., Kurtzman, C.P. & Hittinger, C.T. "Factors driving metabolic diversity in the budding yeast subphylum." BMC Biology 16,1, 26+ (2018). [DOI: 10.1186/s12915-018-0498-3] DOI Google Scholar	Conversion
2018	Ostrom, N.E., Gandhi, H., Coplen, T.B., Toyoda, S., Böhlke, J.K., Brand, W.A., Casciotti, K.L., Dyckmans, J., Giesemann, A., Mohn, J., et al. "Preliminary assessment of stable nitrogen and oxygen isotopic composition of USGS51 and USGS52 nitrous oxide reference gases and perspectives on calibration needs." Rapid Communications in Mass Spectrometry 32,15, 1207-1214+ (2018). [DOI: 10.1002/rcm.8157] DOI Google Scholar	Deconstruction