Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	Pan, S. & Reed, J.L. "Advances in gap-filling genome-scale metabolic models and model-driven experiments lead to novel metabolic discoveries." Current Opinion in Biotechnology 51, 103-108+ (2018). [DOI: 10.1016/j.copbio.2017.12.012] DOI Google Scholar	Conversion
2018	Ramstein, G.P., Evans, J., Nandety, A., Saha, M.C., Brummer, C., Kaeppler, S.M., Buell, R. & Casler, M.D. "Candidate variants for additive and interactive effects on bioenergy traits in switchgrass (Panicum virgatum L.) identified by genome-wide association analyses." The Plant Genome 11,3, 180002+ (2018). [DOI: 10.3835/plantgenome2018.01.0002] DOI Google Scholar	Feedstocks
2018	Regner, M., Bartuce, A., Padmakshan, D., Ralph, J. & Karlen, S.D. "Reductive cleavage method for quantitation of monolignols and low‐abundance monolignol conjugates." ChemSusChem 11,10, 1600-1605+ (2018). [DOI: 10.1002/cssc.201800617] DOI Google Scholar	Feedstocks
2018	Regner, M., Bartuce, A., Padmakshan, D., Ralph, J. & Karlen, S.D. "Cover Profile: Reductive cleavage method for quantitation of monolignols and low‐abundance monolignol conjugates." ChemSusChem 11, 1580+ (2018). [DOI: 10.1002/cssc.201800958] DOI Google Scholar	Feedstocks
2018	Rencoret, J., Kim, H., Evaristo, A.B., Gutiérrez, A., Ralph, J. & del Rio, J.C. "Variability in lignin composition and structure in cell walls of different parts of macaúba (Acrocomia aculeata) palm fruit." Journal of Agricultural and Food Chemistry 66,1, 138-153+ (2018). [DOI: 10.1021/acs.jafc.7b04638] DOI Google Scholar	Feedstocks
2018	Rodriguez-R, L.M., Gunturu, S., Tiedje, J.M., Cole, J.R. & Konstantinidis, K.T. "Nonpareil 3: fast estimation of metagenomic coverage and sequence diversity." mSystems 3,3, (2018). [DOI: 10.1128/mSystems.00039-18] DOI Google Scholar	Sustainability
2018	Roley, S.S., Duncan, D.S., Liang, D., Garoutte, A., Jackson, R.D., Tiedje, J.M. & Robertson, P. "Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient." PLOS ONE 13,6, (2018). [DOI: 10.1371/journal.pone.0197320] DOI Google Scholar	Sustainability
2018	Sardi, M. & Gasch, A.P. "Genetic background effects in quantitative genetics: gene-by-system interactions." Current Genetics 64,6, 1173–1176+ (2018). [DOI: 10.1007/s00294-018-0835-7] DOI Google Scholar
2018	Sardi, M., Krause, M., Heilberger, J. & Gasch, A.P. "Genotype-by-environment-by-environment interactions in the Saccharomyces cerevisiae transcriptomic response to alcohols and anaerobiosis." G3: Genes \| Genomes \| Genetics 8,12, 3881-3890+ (2018). [DOI: 10.1534/g3.118.200677] DOI Google Scholar	Conversion
2018	Sardi, M., Paithane, V., Place, M., Robinson, D.E., Hose, J., Wohlbach, D.J. & Gasch, A.P. "Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance." PLOS Genetics 14,2, (2018). [DOI: 10.1371/journal.pgen.1007217] DOI Google Scholar	Conversion
2018	Scarborough, M.J., Lawson, C.E., Hamilton, J.J., Donohue, T.J. & Noguera, D.R. "Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production using an anaerobic microbiome." mSystems 3,6, (2018). [DOI: 10.1128/mSystems.00221-18] DOI Google Scholar	Conversion
2018	Scarborough, M.J., Lynch, G., Dickson, M., McGee, M., Donohue, T.J. & Noguera, D.R. "Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production." Biotechnology for Biofuels 11, 200+ (2018). [DOI: 10.1186/s13068-018-1193-x] DOI Google Scholar	Conversion
2018	Sener, C., Motagamwala, A.H., Alonso, D.M. & Dumesic, J.A. "Enhanced furfural yields from xylose dehydration in the gamma-valerolactone/water solvent system at elevated temperatures." ChemSusChem DOI: 10.1002/cssc.201800730, (2018). [DOI: 10.1002/cssc.201800730] DOI Google Scholar	Conversion
2018	Shade, A. "Understanding microbiome stability in a changing world." mSystems 3,2, (2018). [DOI: 10.1128/mSystems.00157-17] DOI Google Scholar	Sustainability
2018	Shade, A., Dunn, R.R., Blowes, S.A., Keil, P., Bohannan, B.J.M., Herrmann, M., Küsel, K., Lennon, J.T., Sanders, N.J., Storch, D., et al. "Macroecology to unite all life, large and small." Trends in Ecology and Evolution 33,10, 731-744+ (2018). [DOI: 10.1016/j.tree.2018.08.005] DOI Google Scholar
2018	Shen, X.-X., Opulente, D.A., Kominek, J., Zhou, X., Steenwyk, J.L., Buh, K.V., Haase, M.A.B., Wisecaver, J.H., Wang, M., Doering, D.T., et al. "Tempo and mode of genome evolution in the budding yeast subphylum." Cell 175,6, 1533-1545+ (2018). [DOI: 10.1016/j.cell.2018.10.023] DOI Google Scholar	Conversion
2018	Song, B., Li, B., Wang, X., Shen, W., Park, S., Collings, C., Feng, A., Smith, S.J., Walton, J.D. & Ding, S.-Y. "Real-time imaging reveals that lytic polysaccharide monooxygenase promotes cellulase activity by increasing cellulose accessibility." Biotechnology for Biofuels 11,41, 11+ (2018). [DOI: 10.1186/s13068-018-1023-1] DOI Google Scholar	Deconstruction
2018	Song, Y., Mobley, J.K., Motagamwala, A.H., Isaacs, M., Dumesic, J.A., Ralph, J., Lee, A.F., Wilson, K. & Crocker, M. "Gold-catalyzed conversion of lignin to low molecular weight aromatics." Chemical Science 9,42, 8127-8133+ (2018). [DOI: 10.1039/C8SC03208D] DOI Google Scholar	Feedstocks
2018	Spiesman, B.J., Kummel, H. & Jackson, R.D. "Carbon storage potential increases with increasing ratio of C4 to C3 grass cover and soil productivity in restored tallgrass prairies." Oecologia 186,2, 565-576+ (2018). [DOI: 10.1007/s00442-017-4036-8] DOI Google Scholar	Sustainability
2018	Sprunger, C.D. & Robertson, P. "Early accumulation of active fraction soil carbon in newly established cellulosic biofuel systems." Geoderma 318, 42-51+ (2018). [DOI: 10.1016/j.geoderma.2017.11.040] DOI Google Scholar	Sustainability
2018	Stanton, C.L., Reinhard, C.T., Kasting, J.F., Ostrom, N.E., Haslun, J.A., Lyons, T.W. & Glass, J.B. "Nitrous oxide from chemodenitrification: a possible missing link in the Proterozoic greenhouse and the evolution of aerobic respiration." Geobiology 16,6, 597-609+ (2018). [DOI: 10.1111/gbi.12311] DOI Google Scholar
2018	Takeda, Y., Tobimatsu, Y., Karlen, S.D., Koshiba, T., Suzuki, S., Yamamura, M., Murakami, S., Mukai, M., Hattori, T., Osakabe, K., et al. "Downregulation of p‐COUMAROYL ESTER 3‐HYDROXYLASE in rice leads to altered cell wall structures and improves biomass saccharification." The Plant Journal 96,5, 796-811+ (2018). [DOI: 10.1111/tpj.13988] DOI Google Scholar	Feedstocks
2018	Taylor, M., Tornqvist, C.-E., Zhao, X., Grabowski, P., Doerge, R., Ma, J., Volenec, J., Evans, J., Ramstein, G.P., Sanciangco, M.D., et al. "Genome-wide association study in pseudo-F2 populations of switchgrass identifies genetic loci affecting heading and anthesis dates." Frontiers in Plant Science 9,1250, (2018). [DOI: 10.3389/fpls.2018.01250] DOI Google Scholar	Feedstocks
2018	Tian, L., Chen, J. & Shao, C. "Interdependent dynamics of LAI-albedo across the roofing landscapes: Mongolian and Tibetan plateaus." Remote Sensing 10,7, 1159+ (2018). [DOI: 10.3390/rs10071159] DOI Google Scholar	Sustainability
2018	Tian, M. & Reed, J.L. "Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis." Bioinformatics 34,22, 3882-3888+ (2018). [DOI: 10.1093/bioinformatics/bty445] DOI Google Scholar	Conversion