Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2020	Scarborough, M.J., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Medium-chain fatty acid synthesis by Candidatus Weimeria bifida, gen. nov., sp. nov., and Candidatus Pseudoramibacter fermentans, sp. nov." Applied and Environmental Microbiology 86,3, (2020). [DOI: 10.1128/AEM.02242-19] DOI Google Scholar
2020	Schwarz, B., Azodi, C.B., Shiu, S.-H. & Bauer, P. "Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots." Plant Physiololgy 182,3, 1420-1439+ (2020). [DOI: 10.1104/pp.19.00760] DOI Google Scholar
2020	Sciusco, P., Chen, J., Abraha, M., Lei, C., Robertson, P., Lafortezza, R., Shirkey, G., Ouyang, Z., Zhang, R. & John, R. "Spatiotemporal variations of albedo in managed agricultural landscapes: inferences to global warming impacts (GWI)." Landscape Ecology 35, 1385-1402+ (2020). [DOI: 10.1007/s10980-020-01022-8] DOI Google Scholar	Sustainability
2020	Sharkey, T.D., Preiser, A.L., Weraduwage, S.M. & Gog, L. "Source of 12C in Calvin-Benson cycle intermediates and isoprene emitted from plant leaves fed with 13CO2." Biochemical Journal 477,17, 3237-3252+ (2020). [DOI: 10.1042/BCJ20200480] DOI Google Scholar
2020	Shen, A., Sakai, S. & Rothamer, D. "Parameters for screening SI engine alternative fuels for mixture formation behavior related to particulate matter formation: application to 2-methyl-3-buten-2-ol (methyl butenol, MBO)." in Spring Technical Meeting of the Central States Section of the Combustion Institute. (2020). Google Scholar	Sustainability
2020	Shen, X.-X., Li, Y., Hittinger, C.T., Chen, X.-xin & Rokas, A. "An investigation of irreproducibility in maximum likelihood phylogenetic inference." Nature Communications 11, 6096+ (2020). [DOI: 10.1038/s41467-020-20005-6] DOI Google Scholar
2020	Shen, X.-X., Steenwyk, J.L., Labella, A.L., Opulente, D.A., Zhou, X., Kominek, J., Li, Y., Groenewald, M., Hittinger, C.T. & Rokas, A. "Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota." Science Advances 6,45, (2020). [DOI: 10.1126/sciadv.abd0079] DOI Google Scholar
2020	Shen, Z. & Van Lehn, R.C. "Solvent selection for the separation of lignin-derived monomers using the conductor-like screening model for real solvents." Industrial & Engineering Chemistry Research 59,16, 7755-7764+ (2020). [DOI: 10.1021/acs.iecr.9b06086] DOI Google Scholar
2020	Song, B., Zhao, S., Shen, W., Collings, C. & Ding, S.-Y. "Direct measurement of plant cellulose microfibril and bundles in native cell walls." Frontiers in Plant Science 11, 479+ (2020). [DOI: 10.3389/fpls.2020.00479] DOI Google Scholar
2020	Sprunger, C.D., Martin, T. & Mann, M. "Systems with greater perenniality and crop diversity enhance soil biological health." Agricultural & Environmental Letters 5,1, (2020). [DOI: 10.1002/ael2.20030] DOI Google Scholar	Sustainability
2020	Srivastava, P.A., Hegg, E.L., Fox, B.G. & Yennamalli, R.M. "PreDSLpmo: a neural network-based prediction tool for functional annotation of lytic polysaccharide monooxygenases." Journal of Biotechnology 308, 148-155+ (2020). [DOI: 10.1016/j.jbiotec.2019.12.002] DOI Google Scholar
2020	Stahlheber, K.A., Lindquist, J., Drogosh, P.D., Pennington, D. & Gross, K.L. "Predicting productivity: a trait-based analysis of variability in biomass yield among switchgrass feedstock cultivars." Agriculture, Ecosystems & Environment 300, 106980+ (2020). [DOI: 10.1016/j.agee.2020.106980] DOI Google Scholar	Sustainability
2020	Stoneman, H.R., Wrobel, R.L., Place, M., Graham, M., Krause, D.J., De Chiara, M., Liti, G., Schacherer, J., Landick, R., Gasch, A.P., et al. "CRISpy-Pop: a web tool for designing CRISPR/Cas9-driven genetic modifications in diverse populations." G3: Genes \| Genomes \| Genetics 10,11, 4287-4294+ (2020). [DOI: 10.1534/g3.120.401498] DOI Google Scholar
2020	Taifan, G.S.P. & Maravelias, C.T. "Integration of graphical approaches into optimization-based design of multistage liquid extraction." Computers & Chemical Engineering 143, 107126+ (2020). [DOI: 10.1016/j.compchemeng.2020.107126] DOI Google Scholar	Deconstruction, Sustainability
2020	Timokhin, V.I., Regner, M., Motagamwala, A.H., Sener, C., Karlen, S.D., Dumesic, J.A. & Ralph, J. "Production of p‐coumaric acid from corn GVL-lignin." ACS Sustainable Chemistry & Engineering 8,47, 17427–17438+ (2020). [DOI: 10.1021/acssuschemeng.0c05651] DOI Google Scholar
2020	Todor, H., Osadnik, H., Campbell, E.A., Myers, K.S., Li, H., Donohue, T.J. & Gross, C.A. "Rewiring the specificity of extracytoplasmic function sigma factors." Proceedings of the National Academy of Sciences of the United States of America 117,52, 33496-33506+ (2020). [DOI: 10.1073/pnas.2020204117] DOI Google Scholar
2020	Tsai, C.-J., Xu, P., Xue, L.-J., Hu, H., Nyamdari, B., Naran, R., Zhou, X., Goeminne, G., Gao, R., Gjersing, E., et al. "Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar." Plant Physiology 183, 123-136+ (2020). [DOI: 10.1104/pp.19.01550] DOI Google Scholar
2020	VanWallendael, A., Bonnette, J., Juenger, T.E., Fritschi, F.B., Fay, P.A., Mitchell, R.B., Lloyd-Reilley, J., Rouquette, F.M., Bergstrom, G.C. & Lowry, D.B. "Geographic variation in the genetic basis of resistance to leaf rust between locally adapted ecotypes of the biofuel crop switchgrass (Panicum virgatum)." New Phytologist 227,6, 1696-1708+ (2020). [DOI: 10.1111/nph.16555] DOI Google Scholar	Sustainability
2020	Vera, J.M., Ghosh, I.N., Zhang, Y., Hebert, A.S., Coon, J.J. & Landick, R. "Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters." mSystems 5,4, (2020). [DOI: 10.1128/mSystems.00250-20] DOI Google Scholar
2020	Walker, T.W., Frelka, N., Shen, Z., Chew, A.K., Banick, J., Grey, S., Kim, M.S., Dumesic, J.A., Van Lehn, R.C. & Huber, G.W. "Recycling of multilayer plastic packaging materials by solvent-targeted recovery and precipitation." Science Advances 6,47, (2020). [DOI: 10.1126/sciadv.aba7599] DOI Google Scholar
2020	Walker, T.W., Kuch, N., Meulen, K.A.V., Clewett, C.F.M., Huber, G.W., Fox, B.G. & Dumesic, J.A. "Solid-state NMR studies of solvent-mediated, acid-catalyzed woody biomass pretreatment for enzymatic conversion of residual cellulose." ACS Sustainable Chemistry & Engineering 8,16, 6551-6563+ (2020). [DOI: 10.1021/acssuschemeng.0c01538] DOI Google Scholar
2020	Wang, F. & Stahl, S.S. "Electrochemical oxidation of organic molecules at lower overpotential: accessing broader functional group compatibility with electron-proton transfer mediators." Accounts of Chemical Research 53,3, 561-574+ (2020). [DOI: 10.1021/acs.accounts.9b00544] DOI Google Scholar	Deconstruction
2020	Wang, S., Sanford, G.R., Robertson, P., Jackson, R.D. & Thelen, K.D. "Perennial bioenergy crop yield and quality response to nitrogen fertilization." BioEnergy Research 13, 157-166+ (2020). [DOI: 10.1007/s12155-019-10072-z] DOI Google Scholar
2020	Xu, J., Roley, S.S., Tfaily, M.M., Chu, R.K. & Tiedje, J.M. "Organic amendments change soil organic C structure and microbial community but not total organic matter on sub-decadal scales." Soil Biology and Biochemistry 150, 107986+ (2020). [DOI: 10.1016/j.soilbio.2020.107986] DOI Google Scholar	Sustainability
2020	Yamamoto, M., Tomiyama, H., Koyama, A., Okuizumi, H., Liu, S., Vanholme, R., Goeminne, G., Hirai, Y., Shi, H., Nuoendagula, N., et al. "A century-old mystery unveiled: Sekizaisou is a natural lignin mutant." Plant Physiology 182, 1821-1828+ (2020). [DOI: 10.1104/pp.19.01467] DOI Google Scholar