Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Zhang, B., Penton, R., Yu, Z., Xue, C., Chen, Q., Chen, Z., Yan, C., Zhang, Q., Zhao, M., Quensen, J.F., et al. "A new primer set for Clade I nosZ that recovers genes from a broader range of taxa." Biology and Fertility of Soils 57,4, 523-531+ (2021). [DOI: 10.1007/s00374-021-01544-6] DOI Google Scholar	Sustainability
2021	Zhang, J., Shen, W., Collings, C., Meulen, K.A.V., Fox, B.G., Ramos, L.M.V., Dumesic, J.A. & Ding, S.-Y. "Visualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatment." Chemical Engineering Journal 412, 128660+ (2021). [DOI: 10.1016/j.cej.2021.128660] DOI Google Scholar
2021	Zhang, L., MacQueen, A., Bonnette, J., Fritschi, F.B., Lowry, D.B. & Juenger, T.E. "QTL x environment interactions underlie ionome divergence in switchgrass." G3: Genes \| Genomes \| Genetics 11,7, (2021). [DOI: 10.1093/g3journal/jkab144] DOI Google Scholar	Sustainability
2021	Zhang, X., Lark, T.J., Clark, C.M., Yuan, Y. & LeDuc, S.D. "Grassland-to-cropland conversion increased soil, nutrient, and carbon losses in the US Midwest between 2008 and 2016." Environmental Research Letters 16,5, 054018+ (2021). [DOI: 10.1088/1748-9326/abecbe] DOI Google Scholar	Sustainability
2021	Zhou, P., Sanchez-Rivera, K.L., Huber, G.W. & Van Lehn, R.C. "Computational approach for rapidly predicting temperature-dependent polymer solubilities using molecular-scale models." ChemSusChem 14,19, 4307-4316+ (2021). [DOI: 10.1002/cssc.202101137] DOI Google Scholar
2020	Abbas, M., Peszlen, I., Shi, R., Kim, H., Katahira, R., Kafle, K., Xiang, Z., Huang, X., Min, D., Mohamadamin, M., et al. "Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood." Tree Physiology 40,1, 73-89+ (2020). [DOI: 10.1093/treephys/tpz020] DOI Google Scholar
2020	Abraha, M., Chen, J., Hamilton, S.K. & Robertson, P. "Long-term evapotranspiration rates for rainfed corn and perennial bioenergy crops in a mesic landscape." Hydrological Processes 34,3, 810-822+ (2020). [DOI: 10.1002/hyp.13630] DOI Google Scholar	Sustainability
2020	Albrecht, M., Kleijn, D., Williams, N.M., Tschumi, M., Blaauw, B.R., Bommarco, R., Campbell, A.J., Dainese, M., Drummond, F.A., Entling, M.H., et al. "The effectiveness of flower strips and hedgerows on pest control, pollination services and crop yield: a quantitative synthesis." Ecology Letters 23,10, 1488-1498+ (2020). [DOI: 10.1111/ele.13576] DOI Google Scholar	Sustainability
2020	Anson, C.W. & Stahl, S.S. "Mediated fuel cells: soluble redox mediators and their applications to electrochemical reduction of O2 and oxidation of H2, alcohols, biomass, and complex fuels." Chemical Reviews 120,8, 3749-3786+ (2020). [DOI: 10.1021/acs.chemrev.9b00717] DOI Google Scholar
2020	Azodi, C.B., Lloyd, J.P. & Shiu, S.-H. "The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana." NAR Genomics and Bioinformatics 2,3, (2020). [DOI: 10.1093/nargab/lqaa049] DOI Google Scholar
2020	Azodi, C.B., Pardo, J., VanBuren, R., Campos, G. de L. & Shiu, S.-H. "Transcriptome-based prediction of complex traits in maize." The Plant Cell 32, 139-151+ (2020). [DOI: 10.1105/tpc.19.00332] DOI Google Scholar
2020	Azodi, C.B., Tang, J. & Shiu, S.-H. "Opening the black box: interpretable machine learning for geneticists." Trends in Genetics 36,6, 442-455+ (2020). [DOI: 10.1016/j.tig.2020.03.005] DOI Google Scholar
2020	Banerjee, R., Weisenhorn, E., Schwartz, K.J., Myers, K.S., Glasner, J.D., Perna, N.T., Coon, J.J., Welch, R.A. & Kiley, P.J. "Tailoring a global iron regulon to a uropathogen." mBio 11,2, (2020). [DOI: 10.1128/mBio.00351-20] DOI Google Scholar
2020	Banta, A.B., Enright, A.L., Siletti, C. & Peters, J.M. "A high-efficacy CRISPR interference system for gene function discovery in Zymomonas mobilis." Applied and Environmental Microbiology 86,23, (2020). [DOI: 10.1128/AEM.01621-20] DOI Google Scholar
2020	Banta, A.B., Ward, R.D., Tran, J.S., Bacon, E.E. & Peters, J.M. "Programmable gene knockdown in diverse bacteria using mobile-CRISPRi." Current Protocols in Microbiology 59,1, (2020). [DOI: 10.1002/cpmc.130] DOI Google Scholar
2020	Bao, Y., Song, W.-M., Wang, P., Yu, X., Li, B., Jiang, C., Shiu, S.-H., Zhang, H. & Bassham, D.C. "COST1 regulates autophagy to control plant drought tolerance." Proceedings of the National Academy of Sciences of the United States of America 117,13, 7482-7493+ (2020). [DOI: 10.1073/pnas.1918539117] DOI Google Scholar	Sustainability
2020	Benucci, G.M.N., Rennick, B. & Bonito, G. "Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?" PLOS ONE 15,8, (2020). [DOI: 10.1371/journal.pone.0237368] DOI Google Scholar	Sustainability
2020	Bhandari, D.D. & Brandizzi, F. "Plant endomembranes and cytoskeleton: moving targets in immunity." Current Opinion in Plant Biology 58, 8-16+ (2020). [DOI: 10.1016/j.pbi.2020.09.003] DOI Google Scholar	Feedstocks
2020	Bilyera, N., Kuzyakova, I., Guber, A., Razavi, B.S. & Kuzyakov, Y. "How “hot” are hotspots: statistically localizing the high-activity areas on soil and rhizosphere images." Rhizosphere 16, 100259+ (2020). [DOI: 10.1016/j.rhisph.2020.100259] DOI Google Scholar
2020	Chang, H., Bajaj, I., Huber, G.W., Maravelias, C.T. & Dumesic, J.A. "Catalytic strategy for conversion of fructose to organic dyes, polymers, and liquid fuels." Green Chemistry 22, 5285-5295+ (2020). [DOI: 10.1039/D0GC01576H] DOI Google Scholar
2020	Chang, H., Huber, G.W. & Dumesic, J.A. "Chemical-switching strategy for synthesis and controlled release of norcantharimides from a biomass-derived chemical." ChemSusChem 13,19, 5213-5219+ (2020). [DOI: 10.1002/cssc.202001471] DOI Google Scholar
2020	Chew, A.K., Jiang, S., Zhang, W., Zavala, V.M. & Van Lehn, R.C. "Fast predictions of liquid-phase acid-catalyzed reaction rates using molecular dynamics simulations and convolutional neural networks." Chemical Science 11, 12464-12476+ (2020). [DOI: 10.1039/D0SC03261A] DOI Google Scholar
2020	Chew, A.K., Walker, T.W., Shen, Z., Demir, B., Witteman, L., Euclide, J., Huber, G.W., Dumesic, J.A. & Van Lehn, R.C. "Effect of mixed-solvent environments on the selectivity of acid-catalyzed dehydration reactions." ACS Catalysis 10, 1679-1691+ (2020). [DOI: 10.1021/acscatal.9b03460] DOI Google Scholar
2020	Chundawat, S.P.S., Pal, R.K., Zhao, C., Campbell, T., Teymouri, F., Videto, J., Nielson, C., Wieferich, B., Sousa, L., Dale, B.E., et al. "Ammonia fiber expansion (AFEX) pretreatment of lignocellulosic biomass." Journal of Visualized Experiments 158, (2020). [DOI: 10.3791/57488] DOI Google Scholar	Deconstruction
2020	Dahlin, K.M., Akanga, D., Lombardozzi, D.L., Reed, D.E., Shirkey, G., Lei, C., Abraha, M. & Chen, J. "Challenging a global land surface model in a local socio-environmental system." Land 9, 398+ (2020). [DOI: 10.3390/land9100398] DOI Google Scholar	Sustainability