Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2021	Liang, D. & Robertson, P. "Nitrification is a minor source of nitrous oxide (N2O) in agricultural landscapes and declines with increasing management intensity." Global Change Biology 27,21, 5599-5613+ (2021). [DOI: 10.1111/gcb.15833] DOI Google Scholar	Sustainability
2021	Liber, J.A., Bonito, G. & Benucci, G.M.N. "CONSTAX2: improved taxonomic classification of environmental DNA markers." Bioinformatics 37,21, 3941-3943+ (2021). [DOI: 10.1093/bioinformatics/btab347] DOI Google Scholar Data	Sustainability
2021	Linz, A.M., Ma, Y., Perez, J.M., Myers, K.S., Kontur, W.S., Noguera, D.R. & Donohue, T.J. "Aromatic dimer dehydrogenases from Novosphingobium aromaticivorans reduce monoaromatic diketones." Applied and Environmental Microbiology 87,24, (2021). [DOI: 10.1128/AEM.01742-21] DOI Google Scholar
2021	Liu, X., Van Acker, R., Voorend, W., Pallidis, A., Goeminne, G., Pollier, J., Morreel, K., Kim, H., Muylle, H., Bosio, M., et al. "Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant." The Plant Journal 105,5, 1240-1257+ (2021). [DOI: 10.1111/tpj.15108] DOI Google Scholar
2021	Lovell, J.T., MacQueen, A.H., Mamidi, S., Bonnette, J., Jenkins, J., Napier, J.D., Sreedasyam, A., Healey, A., Session, A., Shu, S., et al. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass." Nature 590, 438–444+ (2021). [DOI: 10.1038/s41586-020-03127-1] DOI Google Scholar	Feedstocks, Sustainability
2021	Lu, F., Wang, C., Chen, M. & Ralph, J. "A facile spectroscopic method for measuring lignin content in lignocellulosic biomass." Green Chemistry 23,14, 5106-5112+ (2021). [DOI: 10.1039/D1GC01507A] DOI Google Scholar
2021	Luo, H., Weeda, E.P., Alherech, M., Anson, C.W., Karlen, S.D., Cui, Y., Foster, C.E. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass under non-alkaline conditions." Journal of the American Chemical Society 143,37, 15462-15470+ (2021). [DOI: 10.1021/jacs.1c08635] DOI Google Scholar	Deconstruction
2021	Ma, Y., Donohue, T.J. & Noguera, D.R. "Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris." Biodegradation 32,2, 179–192+ (2021). [DOI: 10.1007/s10532-021-09932-3] DOI Google Scholar
2021	Maestrini, B. & Basso, B. "Subfield crop yields and temporal stability in thousands of US Midwest fields." Precision Agriculture 22,6, 1749–1767+ (2021). [DOI: 10.1007/s11119-021-09810-1] DOI Google Scholar	Sustainability
2021	Martien, J.I., Trujillo, E.A., Jacobson, T.B., Tatli, M., Hebert, A.S., Stevenson, D.M., Coon, J.J. & Amador-Noguez, D. "Metabolic remodeling during nitrogen fixation in Zymomonas mobilis." mSystems 6,6, (2021). [DOI: 10.1128/mSystems.00987-21] DOI Google Scholar
2021	McDaniel, E.A., Moya-Flores, F., Beach, N.K., Camejo, P.Y., Oyserman, B.O., Kizaric, M., Khor, E.H., Noguera, D.R. & McMahon, K.D. "Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00474-21] DOI Google Scholar
2021	McDaniel, E.A., Wever, R., Oyserman, B.O., Noguera, D.R. & McMahon, K.D. "Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal." Microbiology Resource Announcements 10,18, (2021). [DOI: 10.1128/MRA.00244-21] DOI Google Scholar
2021	Mosier, S., Córdova, C.S. & Robertson, P. "Restoring soil fertility on degraded lands to meet food, fuel, and climate security needs via perennialization." Frontiers in Sustainable Food Systems 5, 706142+ (2021). [DOI: 10.3389/fsufs.2021.706142] DOI Google Scholar
2021	Murphy, E.K., Mottiar, Y., Soolanayakanahally, R.Y. & Mansfield, S.D. "Variations in cell wall traits impact saccharification potential of Salix famelica and Salix eriocephala." Biomass & Bioenergy 148, 106051+ (2021). [DOI: 10.1016/j.biombioe.2021.106051] DOI Google Scholar	Feedstocks
2021	Myers, K.S., Noguera, D.R. & Donohue, T.J. "Promoter architecture differences among Alphaproteobacteria and other bacterial taxa." mSystems 6,4, (2021). [DOI: 10.1128/mSystems.00526-21] DOI Google Scholar
2021	Myers, K.S., Place, M., Kominek, J., Noguera, D.R. & Donohue, T.J. "Delila-PY, a pipeline for utilizing the Delila suite of software to identify potential DNA binding motifs." Microbiology Resource Announcements 10,15, (2021). [DOI: 10.1128/MRA.00160-21] DOI Google Scholar
2021	Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I.-M., Huntemann, M., et al. "A genomic catalog of Earth's microbiomes." Nature Biotechnology 39,4, 499-509+ (2021). [DOI: 10.1038/s41587-020-0718-6] DOI Google Scholar
2021	Ntana, F., Bhat, W.W., Johnson, S.R., Jorgensen, H.J.L., Collinge, D.B., Jensen, B. & Hamberger, B. "A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol." Biomolecules 11,6, 898+ (2021). [DOI: 10.3390/biom11060898] DOI Google Scholar
2021	O'Brien, C.E., Oliveira-Pacheco, J., Cinneide, E.O., Haase, M.A.B., Hittinger, C.T., Rogers, T.R., Zaragoza, O., Bond, U. & Butler, G. "Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples." PLOS Pathogens 17,3, (2021). [DOI: 10.1371/journal.ppat.1009138] DOI Google Scholar
2021	O’Neill, E.G. & Maravelias, C.T. "Towards integrated landscape design and biofuel supply chain optimization." Current Opinion in Chemical Engineering 31, 100666+ (2021). [DOI: 10.1016/j.coche.2020.100666] DOI Google Scholar	Sustainability
2021	Oates, N.C., Abood, A., Schirmacher, A.M., Alessi, A.M., Bird, S.M., Bennett, J.P., Leadbeater, D.R., Li, Y., Dowle, A.A., Liu, S., et al. "A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1." Proceedings of the National Academy of Sciences of the United States of America 118,18, (2021). [DOI: 10.1073/pnas.2008888118] DOI Google Scholar
2021	Oliver, J., Fan, M., McKinley, B., Zemelis-Durfee, S., Brandizzi, F., Wilkerson, C. & Mullet, J.E. "The AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolor." The Plant Journal 105,4, 1053-1071+ (2021). [DOI: 10.1111/tpj.15086] DOI Google Scholar
2021	Ostrom, P.H., DeCamp, S., Gandhi, H., Haslun, J. & Ostrom, N.E. "The influence of tillage and fertilizer on the flux and source of nitrous oxide with reference to atmospheric variation using laser spectroscopy." Biogeochemistry 152, 143-159+ (2021). [DOI: 10.1007/s10533-020-00742-y] DOI Google Scholar
2021	Perez, J.M., Kontur, W.S., Gehl, C., Gille, D.M., Ma, Y., Niles, A.V., Umana, G., Donohue, T.J. & Noguera, D.R. "Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics." Applied and Environmental Microbiology 87,8, (2021). [DOI: 10.1128/AEM.02794-20] DOI Google Scholar
2021	Reed, D.E., Poe, J., Abraha, M., Dahlin, K.M. & Chen, J. "Modeled surface-atmosphere fluxes from paired sites in the Upper Great Lakes Region using neural networks." JGR Biogeosciences 126,8, (2021). [DOI: 10.1029/2021JG006363] DOI Google Scholar	Sustainability