Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2024	Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8] DOI Google Scholar
2024	Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 21-34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2] DOI Google Scholar
2024	Bibik, J.D. & Hamberger, B. "Plant engineering to enable platforms for sustainable bioproduction of terpenoids." in Synthetic Biology. Methods in Molecular Biology. vol. 2760 3-20+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_1] DOI Google Scholar
2024	Bibik, J.D., Sahu, A., Kim, B., Unda, F., Andersen, T.B., Mansfield, S.D., Maravelias, C.T., Sharkey, T.D. & Hamberger, B.R. "Engineered poplar for bioproduction of the triterpene squalene." Plant Biotechnology Journal DOI: 10.1111/pbi.14345, (2024). [DOI: 10.1111/pbi.14345] DOI Google Scholar
2024	Chandrasekar, M., Collins, J.L., Habibi, S. & Ong, R.G. "Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass." Bioresource Technology 393, 129989+ (2024). [DOI: 10.1016/j.biortech.2023.129989] DOI Google Scholar
2024	Chavez, C.M., Groenewald, M., Hulfachor, A.B., Kpurubu, G., Huerta, R., Hittinger, C.T. & Rokas, A. "The cell morphological diversity of Saccharomycotina yeasts." FEMS Yeast Research 24, (2024). [DOI: 10.1093/femsyr/foad055] DOI Google Scholar
2024	Chipkar, S., Kahmark, K., Bohm, S., Hussain, M.Z., Joshi, L., Krieg, K.M., Aguado, J., Cassidy, J., Lozano, P., Garland, K., et al. "High temperatures and low soil moisture synergistically reduce switchgrass yields from marginal field sites and inhibit fermentation." Global Change Biology – Bioenergy 16,2, (2024). [DOI: 10.1111/gcbb.13119] DOI Google Scholar
2024	David, K.T., Harrison, M.-C., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Pennell, M., Hittinger, C.T., et al. "Saccharomycotina yeasts defy long-standing macroecological patterns." Proceedings of the National Academy of Sciences of the United States of America 121,10, (2024). [DOI: 10.1073/pnas.2316031121] DOI Google Scholar
2024	Doron, L., Raval, D. & Kerfeld, C.A. "Towards using bacterial microcompartments as a platform for spatial metabolic engineering in the industrially important and metabolically versatile Zymomonas mobilis." Frontiers in Bioengineering and Biotechnology 12, 1344260+ (2024). [DOI: 10.3389/fbioe.2024.1344260] DOI Google Scholar
2024	Fu, J., McKinley, B., James, B., Chrisler, W., Markillie, L.M., Gaffrey, M.J., Mitchell, H.D., Riaz, M.R., Marcial, B., Orr, G., et al. "Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems." The Plant Journal DOI: 10.1111/tpj.16690, (2024). [DOI: 10.1111/tpj.16690] DOI Google Scholar
2024	Geissler, C.H., Ryu, J. & Maravelias, C.T. "The future of biofuels in the United States transportation sector." Renewable and Sustainable Energy Reviews 192, 114276+ (2024). [DOI: 10.1016/j.rser.2023.114276] DOI Google Scholar
2024	Goncalves, C., Hittinger, C.T. & Rokas, A. "Horizontal gene transfer in fungi and its ecological importance." in Fungal Associations. vol. 9 59-81+ (Springer, 2024). [DOI: 10.1007/978-3-031-41648-4_3] DOI Google Scholar
2024	Guber, A. & Kravchenko, A. "2-D soil zymography: accounting for the spatial variation of pH." Rhizosphere 29, 100862+ (2024). [DOI: 10.1016/j.rhisph.2024.100862] DOI Google Scholar
2024	Haan, N.L., Helms, J.A. & Landis, D. "Bioenergy cropping systems shape ant community composition and functional roles." Frontiers in Conservation Science 4, 1283225+ (2024). [DOI: 10.3389/fcosc.2023.1283225] DOI Google Scholar	Sustainability
2024	Hoang, D.Q., Wilson, L.R., Scheftgen, A.J., Suen, G. & Currie, C.R. "Disturbance-diversity relationships of microbial communities change based on growth substrate." mSystems 9,2, (2024). [DOI: 10.1128/msystems.00887-23] DOI Google Scholar
2024	Hurt, A., Bibik, J.D., Martinez-Gomez, N.C. & Hamberger, B. "Engineering terpene production pathways in Methylobacterium extorquens AM1." Microorganisms 12,3, 500+ (2024). [DOI: 10.3390/microorganisms12030500] DOI Google Scholar
2024	Jiao, Y., Nigam, D., Barry, K., Daum, C., Yoshinaga, Y., Lipzen, A., Khan, A., Parasa, S.-P., Wei, S., Lu, Z., et al. "A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes." The Plant Journal 117,5, 1543-1557+ (2024). [DOI: 10.1111/tpj.16582] DOI Google Scholar
2024	Karlen, S.D., Timokhin, V.I., Sener, C., Mobley, J.K., Runge, T. & Ralph, J. "Production of biomass-derived p-hydroxybenzamide: synthesis of p-aminophenol and paracetamol." ChemSusChem DOI: 10.1002/cssc.202400234, (2024). [DOI: 10.1002/cssc.202400234] DOI Google Scholar
2024	Kfoury, B., Rodrigues, W.F.C., Kim, S.-J., Brandizzi, F. & Del-Bem, L.-E. "Multiple horizontal gene transfer events have shaped plant glycosyl hydrolase diversity and function." New Phytologist 242,2, 809-824+ (2024). [DOI: 10.1111/nph.19595] DOI Google Scholar
2024	Ko, D.K. & Brandizzi, F. "Dynamics of ER stress-induced gene regulation in plants." Nature Review Genetics DOI: 10.1038/s41576-024-00710-4, (2024). [DOI: 10.1038/s41576-024-00710-4] DOI Google Scholar
2024	Lam, L.P.Y., Tobimatsu, Y., Suzuki, S., Tanaka, T., Yamamoto, S., Takeda-Kimura, Y., Osakabe, Y., Osakabe, K., Ralph, J., Bartley, L.E., et al. "Disruption of p-coumaroyl-CoA:monolignol transferases in rice drastically alters lignin composition." Plant Physiology 194,2, 832-848+ (2024). [DOI: 10.1093/plphys/kiad549] DOI Google Scholar
2024	Li, J., Van Lehn, R.C. & Maravelias, C.T. "An explainable classification framework for determining and understanding the suitability of solvent extraction for bioproduct recovery." ACS Sustainable Chemistry & Engineering DOI: 10.1021/acssuschemeng.3c07129, (2024). [DOI: 10.1021/acssuschemeng.3c07129] DOI Google Scholar
2024	Lindstrom, J.K., Peterson, C.A., Ciesielski, P.N., Ralph, J., Chen, M., Jakes, J.E., Johnston, P.A., Rollag, S.A. & Brown, R.C. "Structural and chemical changes in hardwood cell walls during early stages of flash pyrolysis." Frontiers in Energy Research 12, 1348464+ (2024). [DOI: 10.3389/fenrg.2024.1348464] DOI Google Scholar
2024	Mathieu, D., Bryson, A.E., Hamberger, B., Singan, V., Keymanesh, K., Wang, M., Barry, K., Mondo, S., Pangilinan, J., Koriabine, M., et al. "Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi." The Plant Journal DOI: 10.1111/tpj.16605, (2024). [DOI: 10.1111/tpj.16605] DOI Google Scholar
2024	Mosier, S., Kelly, L., Ozlu, E. & Robertson, P. "Switchgrass (Panicum virgatum L.) cultivars have similar impacts on soil carbon and nitrogen stocks and microbial function." Global Change Biology – Bioenergy 16,3, (2024). [DOI: 10.1111/gcbb.13125] DOI Google Scholar