Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Tejera-Nieves, M., Abraha, M., Chen, J., Hamilton, S.K., Robertson, P. & Walker, B.J. "Seasonal decline in leaf photosynthesis in perennial switchgrass explained by sink limitations and water deficit." Frontiers in Plant Science 13, 1023571+ (2023). [DOI: 10.3389/fpls.2022.1023571] DOI Google Scholar
2023	Tejera-Nieves, M. & Walker, B.J. "A 30% reduction in switchgrass rhizome reserves did not decrease biomass yield." Global Change Biology – Bioenergy 15,11, 1329-1338+ (2023). [DOI: 10.1111/gcbb.13094] DOI Google Scholar
2023	Tilhou, N.W., Poudel, H.P., Lovell, J., Mamidi, S., Schmutz, J., Daum, C., Zane, M., Yoshinaga, Y., Lipzen, A. & Casler, M.D. "Genomic prediction of switchgrass winter survivorship across diverse lowland populations." G3: Genes \| Genomes \| Genetics 13,3, (2023). [DOI: 10.1093/g3journal/jkad014] DOI Google Scholar
2023	Venkataraman, M., Yñigez-Gutierrez, A., Infante, V., MacIntyre, A., Fernandes-Júnior, P.I., Ané, J.-M. & Pfleger, B. "Synthetic biology toolbox for nitrogen-fixing soil microbes." ACS Synthetic Biology 12,12, 3623–3634+ (2023). [DOI: 10.1021/acssynbio.3c00414] DOI Google Scholar
2023	Wagner, E.R. & Gasch, A.P. "Advances in S. cerevisiae engineering for xylose fermentation and biofuel production: balancing growth, metabolism, and defense." Journal of Fungi 9,8, 786+ (2023). [DOI: 10.3390/jof9080786] DOI Google Scholar
2023	Wagner, E.R., Nightingale, N.M., Jen, A., Overmyer, K.A., McGee, M., Coon, J.J. & Gasch, A.P. "PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae." PLOS Genetics 19,7, (2023). [DOI: 10.1371/journal.pgen.1010593] DOI Google Scholar
2023	Walters, K.A., Mohan, G., Myers, K.S., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate." Frontiers in Bioengineering and Biotechnology 11, 1173656+ (2023). [DOI: 10.3389/fbioe.2023.1173656] DOI Google Scholar
2023	Wang, Y., Chen, M., Yang, Y., Ralph, J. & Pan, X. "Efficient O-demethylation of lignin-derived aromatic compounds under moderate conditions." RSC Advances 13,9, 5925-5932+ (2023). [DOI: 10.1039/d3ra00245d] DOI Google Scholar
2023	White, R.A., Garoutte, A., McLachlan, E.E., Tiemann, L.K., Evans, S. & Friesen, M.L. "Genome-resolved metagenomics of nitrogen transformations in the switchgrass rhizosphere microbiome on marginal lands." Agronomy 13,5, 1294+ (2023). [DOI: 10.3390/agronomy13051294] DOI Google Scholar
2023	Witvrouw, K., Kim, H., Vanholme, R., Goeminne, G., Ralph, J., Boerjan, W. & Vanholme, B. "Reassessing the claimed cytokinin-substituting activity of dehydrodiconiferyl alcohol glucoside." Proceedings of the National Academy of Sciences of the United States of America 120,9, (2023). [DOI: 10.1073/pnas.2123301120] DOI Google Scholar
2023	Wolters, J.F., Labella, A.L., Opulente, D.A., Rokas, A. & Hittinger, C.T. "Mitochondrial genome diversity across the subphylum Saccharomycotina." Frontiers in Microbiology 14, 1268944+ (2023). [DOI: 10.3389/fmicb.2023.1268944] DOI Google Scholar
2023	Yang, J.E., Larson, M.R., Sibert, B.S., Kim, J.Y., Parrell, D., Sanchez, J.C., Pappas, V., Kumar, A., Cai, K., Thompson, K., et al. "Correlative montage parallel array cryo-tomography for in situ structural cell biology." Nature Methods 20,10, 1537-1543+ (2023). [DOI: 10.1038/s41592-023-01999-5] DOI Google Scholar
2022	Alred, B., Haan, N., Landis, D.A. & Szűcs, M. "Does the presence of the biological control agent, Hypena opulenta (Lepidoptera: Erebidae) on swallow-worts deter monarch oviposition?" Environmental Entomology 51,1, 77-82+ (2022). [DOI: 10.1093/ee/nvab121] DOI Google Scholar
2022	Beach, N.K., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Metagenomes from 25 low-abundance microbes in a partial nitritation anammox microbiome." Microbiology Resource Announcements 11,6, (2022). [DOI: 10.1128/mra.00212-22] DOI Google Scholar
2022	da Costa, P.B., Benucci, G.M.N., Chou, M.-Y., Van Wyk, J., Chretien, M. & Bonito, G. "Soil origin and plant genotype modulate switchgrass aboveground productivity and root microbiome assembly." mBio 13,2, (2022). [DOI: 10.1128/mbio.00079-22] DOI Google Scholar
2022	Bibik, J.D., Weraduwage, S.M., Banerjee, A., Robertson, K.’shawn, Espinoza-Corral, R., Sharkey, T.D., Lundquist, P.K. & Hamberger, B.R. "Pathway engineering, re-targeting, and synthetic scaffolding improve the production of squalene in plants." ACS Synthetic Biology 11,6, 2121-2133+ (2022). [DOI: 10.1021/acssynbio.2c00051] DOI Google Scholar
2022	Bloom, E.H., Graham, K.K., Haan, N.L., Heck, A.R., Gut, L.J., Landis, D.A., Milbrath, M., Quinlan, G.M., Wilson, J.K., Zhang, Y., et al. "Responding to the US national pollinator plan: a case study in Michigan." Frontiers in Ecology and the Environment 20,2, 84-92+ (2022). [DOI: 10.1002/fee.2430] DOI Google Scholar
2022	Bouché, F., Woods, D.P., Linden, J., Li, W., Mayer, K.S., Amasino, R.M. & Périlleux, C. "EARLY FLOWERING 3 and photoperiod sensing in Brachypodium distachyon." Frontiers in Plant Science 12, 769194+ (2022). [DOI: 10.3389/fpls.2021.769194] DOI Google Scholar	Feedstocks
2022	Buessecker, S., Sarno, A.F., Reynolds, M.C., Chavan, R., Park, J., Ortiz, M.F., Pérez-Castillo, A.G., Pisco, G.P., Urquiza-Muñoz, J.D., Reis, L.P., et al. "Coupled abiotic-biotic cycling of nitrous oxide in tropical peatlands." Nature Ecology & Evolution 6, 1881-1890+ (2022). [DOI: 10.1038/s41559-022-01892-y] DOI Google Scholar
2022	Case, N.T., Berman, J., Blehert, D.S., Cramer, R.A., Cuomo, C., Currie, C.R., Ene, I.V., Fisher, M.C., Fritz-Laylin, L.K., Gerstein, A.C., et al. "The future of fungi: threats and opportunities." G3: Genes \| Genomes \| Genetics 12,11, (2022). [DOI: 10.1093/g3journal/jkac224] DOI Google Scholar
2022	Cates, A.C., Jilling, A., Tfaily, M.M. & Jackson, R.D. "Temperature and moisture alter organic matter composition across soil fractions." Geoderma 409, 115628+ (2022). [DOI: 10.1016/j.geoderma.2021.115628] DOI Google Scholar	Sustainability
2022	Chipkar, S., Smith, K., Whelan, E.M., Debrauske, D.J., Jen, A., Overmyer, K.A., Senyk, A., Hooker-Moericke, L., Gallmeyer, M., Coon, J.J., et al. "Water-soluble saponins accumulate in drought-stressed switchgrass and may inhibit yeast growth during bioethanol production." Biotechnology for Biofuels and Bioproducts 15, 116+ (2022). [DOI: 10.1186/s13068-022-02213-y] DOI Google Scholar
2022	De Meester, B., Oyarce, P., Vanholme, R., Van Acker, R., Tsuji, Y., Vangeel, T., Van den Bosch, S., Van Doorsselaere, J., Sels, B., Ralph, J., et al. "Engineering curcumin biosynthesis in poplar affects lignification and biomass yield." Frontiers in Plant Science 13, 943349+ (2022). [DOI: 10.3389/fpls.2022.943349] DOI Google Scholar
2022	de Vries, L., MacKay, H.A., Smith, R.A., Mottiar, Y., Karlen, S.D., Unda, F., Muirragui, E., Bingman, C., Meulen, K.V., Beebe, E.T., et al. "pHBMT1, a BAHD-family monolignol acyltransferase, mediates lignin acylation in poplar." Plant Physiology 188, 1014-1027+ (2022). [DOI: 10.1093/plphys/kiab546] DOI Google Scholar
2022	del Río, J.C., Rencoret, J., Gutiérrez, A., Kim, H. & Ralph, J. "Unconventional lignin monomers—extension of the lignin paradigm." in Advances in Botanical Research. vol. 104 1-39+ (Elsevier, 2022). [DOI: 10.1016/bs.abr.2022.02.001] DOI Google Scholar