Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Opulente, D.A., Langdon, Q.K., Jarzyna, M., Buh, K.V., Haase, M.A.B., Groenewald, M. & Hittinger, C.T. "Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov." Yeast 40,12, 608-615+ (2023). [DOI: 10.1002/yea.3905] DOI Google Scholar
2023	Parra, M., Libkind, D., Hittinger, C.T., Alvarez, L. & Bellora, N. "Assembly and comparative genome analysis of a Patagonian Aureobasidium pullulans isolate reveals unexpected intraspecific variation." Yeast 40,5-6, 197-213+ (2023). [DOI: 10.1002/yea.3853] DOI Google Scholar
2023	de Lima, A.E.P., Wrobel, R.L., Paul, B., Anthony, L.C., Sato, T.K., Zhang, Y., Hittinger, C.T. & Maravelias, C.T. "High yield co-production of isobutanol and ethanol from switchgrass: experiments, and process synthesis and analysis." Sustainable Energy & Fuels 7,14, 3266-3275+ (2023). [DOI: 10.1039/D2SE01741E] DOI Google Scholar
2023	Peng, X., Tong, B., Lee, J., Wang, K., Yu, X., Huang, X., Wen, J., Makarem, M., Pang, H., Hinjan, S., et al. "Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties." Carbohydrate Polymers 314, 120959+ (2023). [DOI: 10.1016/j.carbpol.2023.120959] DOI Google Scholar
2023	Peris, D., Ubbelohde, E.J., Kuang, M.C., Kominek, J., Langdon, Q.K., Adams, M., Koshalek, J.A., Hulfachor, A.B., Opulente, D.A., Hall, D.J., et al. "Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces." Nature Communications 14,1, 690+ (2023). [DOI: 10.1038/s41467-023-36139-2] DOI Google Scholar	Conversion
2023	Perry, S., Falvo, G., Mosier, S. & Robertson, P. "Long-term changes in soil carbon and nitrogen fractions in switchgrass, native grasses, and no-till corn bioenergy production systems." Soil Science Society of America Journal 87,6, 1365-1375+ (2023). [DOI: 10.1002/saj2.20575] DOI Google Scholar
2023	Petit, S. & Landis, D.A. "Landscape-scale management for biodiversity and ecosystem services." Agriculture, Ecosystems & Environment 347, 108370+ (2023). [DOI: 10.1016/j.agee.2023.108370] DOI Google Scholar
2023	Pett-Ridge, J., Ammar, H.Z., Aui, A., Ashton, M., Baker, S.E., Basso, B., Bradford, M., Bump, A.P., Busch, I., Calzado, E.R., et al. "Roads to Removal: Options for Carbon Dioxide Removal in the United States, December 2023, Lawrence Livermore National Laboratory, LLNL-TR-852901." (2023). Google Scholar
2023	Pfleger, B.F. & Takors, R. "Recent progress in the synthesis of advanced biofuel and bioproducts." Current Opinion in Biotechnology 80, 102913+ (2023). [DOI: 10.1016/j.copbio.2023.102913] DOI Google Scholar
2023	Ralph, J., Kim, H., Lu, F., Smith, R.A., Karlen, S.D., Yoshioka, K., Eugene, A., Liu, S., Sener, C., Ando, D., et al. "Lignins and lignification: new developments and emerging concepts." in Recent Advances in Polyphenol Research. vol. 8 1-50+ (Wiley-Blackwell, 2023). [DOI: 10.1002/9781119844792.ch1] DOI Google Scholar
2023	Raza, S., Miller, M., Hamberger, B. & Vermaas, J.V. "Plant terpenoid permeability through biological membranes explored via molecular simulations." The Journal of Physical Chemistry B 127,5, 1144-1157+ (2023). [DOI: 10.1021/acs.jpcb.2c07209] DOI Google Scholar
2023	Rivier, A.J., Myers, K.S., Garcia, A.K., Sobol, M.S. & Kacar, B. "Regulatory response to a hybrid ancestral nitrogenase in Azotobacter vinelandii." Microbiology Spectrum 11,5, (2023). [DOI: 10.1128/spectrum.02815-23] DOI Google Scholar
2023	Robertson, P. "Denitrification and the challenge of scaling microsite knowledge to the globe." mLife 2,3, 229-238+ (2023). [DOI: 10.1002/mlf2.12080] DOI Google Scholar
2023	Robinson, D.E., Vanacloig-Pedros, E., Cai, R., Place, M., Hose, J. & Gasch, A.P. "Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast." G3: Genes \| Genomes \| Genetics 13,10, (2023). [DOI: 10.1093/g3journal/jkad159] DOI Google Scholar
2023	Santos, A.R.O., Barros, K.O., Batista, T.M., Souza, G.F.L., Alvarenga, F.B.M., Abegg, M.A., Sato, T.K., Hittinger, C.T., Lachance, M.-A. & Rosa, C.A. "Saccharomycopsis praedatoria sp. nov., a predacious yeast isolated from soil and rotten wood in an Amazonian rainforest biome." International Journal of Systematic and Evolutionary Microbiology 73,10, 006125+ (2023). [DOI: 10.1099/ijsem.0.006125] DOI Google Scholar
2023	Schmitz, J.M., Wolters, J.F., Murray, N.H., Guerra, R.M., Bingman, C.A., Hittinger, C.T. & Pagliarini, D.J. "Aim18p and Aim46p are chalcone isomerase (CHI)-domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae." Journal of Biological Chemistry 299,3, 102981+ (2023). [DOI: 10.1016/j.jbc.2023.102981] DOI Google Scholar
2023	Shade, A. "Microbiome rescue: directing resilience of environmental microbial communities." Current Opinion in Microbiology 72, 102263+ (2023). [DOI: 10.1016/j.mib.2022.102263] DOI Google Scholar
2023	Shafiei, R., Hooper, M., McClellan, C., Oakey, H., Stephens, J., Lapierre, C., Tsuji, Y., Goeminne, G., Vanholme, R., Boerjan, W., et al. "Downregulation of barley ferulate 5-hydroxylase dramatically alters straw lignin structure without impact on mechanical properties." Frontiers in Plant Science 13, 1125003+ (2023). [DOI: 10.3389/fpls.2022.1125003] DOI Google Scholar
2023	Son, S., Im, J.H., Ko, J.-H. & Han, K.-H. "SNF1-related protein kinase 1 represses Arabidopsis growth through post-translational modification of E2Fa in response to energy stress." New Phytologist 237,3, 823-839+ (2023). [DOI: 10.1111/nph.18597] DOI Google Scholar
2023	Sourice, M., Askenasy, I., Garcia, P.S., Denis, Y., Brasseur, G., Kiley, P.J., Py, B. & Aubert, C. "A diverged transcriptional network for usage of two Fe-S cluster biogenesis machineries in the delta-proteobacterium Myxococcus xanthus." mBio 14,1, (2023). [DOI: 10.1128/mbio.03001-22] DOI Google Scholar
2023	Sreedasyam, A., Plott, C., Hossain, M.S., Lovell, J.T., Grimwood, J., Jenkins, J.W., Daum, C., Barry, K., Carlson, J., Shu, S., et al. "JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom." Nucleic Acids Research 51,16, 8383–840+ (2023). [DOI: 10.1093/nar/gkad616] DOI Google Scholar
2023	Sumer, Z. & Van Lehn, R.C. "Heuristic computational model for predicting lignin solubility in tailored organic solvents." ACS Sustainable Chemistry & Engineering 11,1, 187-198+ (2023). [DOI: 10.1021/acssuschemeng.2c05199] DOI Google Scholar
2023	Taifan, G.S.P. & Maravelias, C.T. "Integrated membrane material design and system synthesis." Chemical Engineering Science 269, 118406+ (2023). [DOI: 10.1016/j.ces.2022.118406] DOI Google Scholar
2023	Taifan, G.S.P. & Maravelias, C.T. "Optimization-based azeotropic distillation system synthesis using geometric insights." Industrial & Engineering Chemistry Research 62,31, 12220-12234+ (2023). [DOI: 10.1021/acs.iecr.3c01269] DOI Google Scholar
2023	Takasuka, T., Kim, H., Deng, K., Bianchetti, C.M., Yamashita, K., Beebe, E.T., Bergeman, L.F., Meulen, K.A.V., Deutsch, S., Ralph, J., et al. "Quantitative analysis of the high yield hydrolysis of kelp by laminarinase and alginate lyase." ChemBioChem 24,20, (2023). [DOI: 10.1002/cbic.202300357] DOI Google Scholar