Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2011	Suen, G., Stevenson, D.M., Bruce, D.C., Chertkov, O., Copeland, A., Cheng, J.-F., Detter, C., Detter, J.C., Goodwin, L.A., Han, C.S., et al. "Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7." Journal of Bacteriology 193,19, 5574-5+ (2011). [DOI: 10.1128/JB.05621-11] DOI Google Scholar	Deconstruction
2011	Suen, G., Teiling, C., Li, L., Holt, C., Abouheif, E., Bornberg-Bauer, E., Bouffard, P., Caldera, E.J., Cash, E., Cavanaugh, A., et al. "The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle." PLOS Genetics 7,2, (2011). [DOI: 10.1371/journal.pgen.1002007] DOI Google Scholar	Deconstruction
2011	Suen, G., Weimer, P.J., Stevenson, D.M., Aylward, F.O., Boyum, J., Deneke, J., Drinkwater, C., Ivanova, N.N., Mikhailova, N., Chertkov, O., et al. "The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist." PLOS ONE 6,4, (2011). [DOI: 10.1371/journal.pone.0018814] DOI Google Scholar	Deconstruction
2011	Swinton, S.M., Babcock, B.A., James, L.K. & Bandaru, V. "Higher US crop prices trigger little area expansion so marginal land for biofuel crops is limited." Energy Policy 39,9, 5254-5258+ (2011). [DOI: 10.1016/j.enpol.2011.05.039] DOI Google Scholar	Sustainability
2011	Syswerda, S.P., Corbin, A.T., Mokma, D.L., Kravchenko, A.N. & Robertson, G.P. "Agricultural management and soil carbon storage in surface vs. deep layers." Soil Science Society of America Journal 75,1, 92+ (2011). [DOI: 10.2136/sssaj2009.0414] DOI Google Scholar	Sustainability
2011	Tobimatsu, Y., Davidson, C.L., Grabber, J.H. & Ralph, J. "Fluorescence-tagged monolignols: synthesis, and application to studying in vitro lignification." Biomacromolecules 12,5, 1752-1761+ (2011). [DOI: 10.1021/bm200136x] DOI Google Scholar	Feedstocks
2011	Troncoso-Ponce, M., Kilaru, A., Cao, X., Durrett, T., Fan, J., Jensen, J., Thrower, N., Pauly, M., Wilkerson, C. & Ohlrogge, J. "Comparative deep transcriptional profiling of four developing oilseeds." The Plant Journal 68,6, 1014-1027+ (2011). [DOI: 10.1111/j.1365-313X.2011.04751.x] DOI Google Scholar	Feedstocks
2011	Van Acker, R., Storme, V., Goeminne, G., Ivens, B., Custers, R., Aerts, D., Soetaert, W., Ralph, J., Santoro, N., Leple, J.-C., et al. "Science, society and biosafety of a field trial with transgenic biofuel poplars." BMC Proceedings 5,Suppl 7, 123+ (2011). [DOI: 10.1186/1753-6561-5-S7-I23] DOI Google Scholar	Feedstocks
2011	Varbanova, M., Porter, K., Lu, F., Ralph, J., Hammerschmidt, R., Jones, D. & Day, B. "Molecular and biochemical basis for stress-induced accumulation of free and bound p-coumaraldehyde in cucumber." Plant Physiology 157, 1056-1066+ (2011). [DOI: 10.1104/pp.111.184358] DOI Google Scholar	Feedstocks
2011	Wagner, A., Tobimatsu, Y., Phillips, L., Flint, H., Torr, K., Donaldson, L., Pears, L. & Ralph, J. "CCoAOMT suppression modifies lignin composition in Pinus radiata." The Plant Journal 67, 119-129+ (2011). [DOI: 10.1111/j.1365-313X.2011.04580.x] DOI Google Scholar	Feedstocks
2011	Walton, J., Banerjee, G. & Car, S. "GENPLAT: an automated platform for biomass enzyme discovery and cocktail optimization." Journal of Visualized Experiments 56, (2011). [DOI: 10.3791/3314] DOI Google Scholar	Deconstruction
2011	Weise, S.E., van Wijk, K.J. & Sharkey, T.D. "The role of transitory starch in C3, CAM, and C4 metabolism and opportunities for engineering leaf starch accumulation." Journal of Experimental Botany 62,9, 3109-3118+ (2011). [DOI: 10.1093/jxb/err035] DOI Google Scholar	Feedstocks
2011	Weng, J.-K., Akiyama, T., Ralph, J. & Chapple, C. "Independent recruitment of an O-methyltransferase for syringyl lignin biosynthesis in Selaginella moellendorffii." The Plant Cell 23, 2708-2724+ (2011). [DOI: 10.1105/tpc.110.081547] DOI Google Scholar	Feedstocks
2011	Werling, B.P., Meehan, T.D., Gratton, C. & Landis, D.A. "Influence of habitat and landscape perenniality on insect natural enemies in three candidate biofuel crops." Biological Control 59,2, 304-312+ (2011). [DOI: 10.1016/j.biocontrol.2011.06.014] DOI Google Scholar	Sustainability
2011	Werling, B.P., Meehan, T.D., Robertson, B.A., Gratton, C. & Landis, D.A. "Biocontrol potential varies with biofuel-crop plant community and landscape perenniality." Global Change Biology – Bioenergy 3,5, 347-359+ (2011). [DOI: 10.1111/j.1757-1707.2011.01092.x] DOI Google Scholar	Sustainability
2011	Wohlbach, D.J., Kuo, A., Sato, T.K., Potts, K.M., Salamov, A.A., LaButti, K.M., Sun, H., Clum, A., Pangilinan, J.L., Lindquist, E.A., et al. "Comparative genomics of xylose-fermenting fungi for enhanced biofuel production." Proceedings of the National Academy of Sciences of the United States of America 108,32, 13212-13217+ (2011). [DOI: 10.1073/pnas.1103039108] DOI Google Scholar	Conversion
2011	Wymelenberg, A.V., Gaskell, J., Mozuch, M., Bondurant, S.S., Sabat, G., Ralph, J., Skyba, O., Mansfield, S.D., Blanchette, R.A., Grigoriev, I.V., et al. "Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species." Applied and Environmental Microbiology 77,13, 4499-507+ (2011). [DOI: 10.1128/AEM.00508-11] DOI Google Scholar	Feedstocks
2011	Xia, J., Jones, D., Lau, M.W., Yuan, Y.-J., Dale, B.E. & Balan, V. "Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity." Biotechnology and Bioengineering 108,1, 12-21+ (2011). [DOI: 10.1002/bit.22910] DOI Google Scholar	Deconstruction
2011	Xu, C., Liang, C., Wullschleger, S., Wilson, C. & McDowell, N. "Importance of feedback loops between soil inorganic nitrogen and microbial communities in the heterotrophic soil respiration response to global warming." Nature Reviews Microbiology 9,3, 222-222+ (2011). [DOI: 10.1038/nrmicro2439-c1] DOI Google Scholar	Sustainability
2011	Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 1. Catalyzed reactions with wood models and wood polymers." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 131-143+ (2011). [DOI: 10.1515/HF.2011.028] DOI Google Scholar
2011	Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 2. Non-catalyzed reactions with the wood cell wall." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 145-154+ (2011). [DOI: 10.1515/HF.2011.029] DOI Google Scholar
2011	Yelle, D.J., Wei, D., Ralph, J. & Hammel, K.E. "Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta." Environmental Microbiology 13,4, 1091-1100+ (2011). [DOI: 10.1111/j.1462-2920.2010.02417.x] DOI Google Scholar	Feedstocks
2011	Youngquist, T., Lennen, R.M., Ranatunga, D.R., Bothfeld, W.H., Marner, W.D. & Pfleger, B.F. "Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain." Biotechnology and Bioengineering 109,6, 1518-27+ (2011). [DOI: 10.1002/bit.24420] DOI Google Scholar	Conversion
2011	Zalapa, J.E., Price, D.L., Kaeppler, S.M., Tobias, C.M., Okada, M. & Casler, M.D. "Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars." Theoretical and Applied Genetics 122,4, 805-17+ (2011). [DOI: 10.1007/s00122-010-1488-1] DOI Google Scholar	Feedstocks
2011	Zenone, T., Chen, J., Deal, M.W., Wilske, B., Jasrotia, P., Xu, J., Bhardwaj, A.K., Hamilton, S.K. & Robertson, P. "CO2 fluxes of transitional bioenergy crops: effect of land conversion during the first year of cultivation." Global Change Biology – Bioenergy 3,5, 401-412+ (2011). [DOI: 10.1111/j.1757-1707.2011.01098.x] DOI Google Scholar	Sustainability