Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Cheng, F., Liu, S., Karlen, S.D., Kim, H., Lu, F., Ralph, J., Ramos, L.M.V., Huber, G.W. & Dumesic, J.A. "Poplar lignin structural changes during extraction in γ-valerolactone (GVL)." Green Chemistry 25, 336-347+ (2023). [DOI: 10.1039/D2GC03446H] DOI Google Scholar
2023	Chou, M.-Y., Andersen, T.B., Llontop, M.E.M., Beculheimer, N., Sow, A., Moreno, N., Shade, A., Hamberger, B. & Bonito, G. "Terpenes modulate bacterial and fungal growth and sorghum rhizobiome communities." Microbiology Spectrum 11,5, (2023). [DOI: 10.1128/spectrum.01332-23] DOI Google Scholar
2023	Courtney, D.K., Su, Y., Jacobson, T.B., Khana, D.B., Ailiani, A., Amador-Noguez, D. & Pfleger, B.F. "Relative activities of the β‑ketoacyl-CoA and acyl-CoA reductases influence the product profile and flux in a reversed β‑oxidation pathway." ACS Catalysis 13, 5914-5925+ (2023). [DOI: 10.1021/acscatal.3c00379] DOI Google Scholar
2023	Crandall, J.G., Fisher, K.J., Sato, T.K. & Hittinger, C.T. "Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism." PLOS Biology 21,11, (2023). [DOI: 10.1371/journal.pbio.3001909] DOI Google Scholar
2023	Cuddington, K., Abbott, K.C., Adler, F.R., Aydeniz, M., Dale, R., Gross, L.J., Hastings, A., Hobson, E.A., Karatayev, V.A., Killion, A., et al. "Challenges and opportunities to build quantitative self-confidence in biologists." BioScience 73,5, 364-375+ (2023). [DOI: 10.1093/biosci/biad015] DOI Google Scholar
2023	Donohue, T.J. "Producing transportation fuels, electrical power, and chemicals in a circular bioeconomy." The Bridge: Linking Engineering and Society 53,2, 41-46+ (2023). [DOI: N/A] DOI Google Scholar
2023	Edwards, J.A., Saran, U.B., Bonnette, J., MacQueen, A., Yin, J., Nguyen, T.U., Schmutz, J., Grimwood, J., Pennacchio, L.A., Daum, C., et al. "Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range." Current Biology 33,10, 1926-1938+ (2023). [DOI: 10.1016/j.cub.2023.03.078] DOI Google Scholar
2023	Ellis, N.A., Myers, K.S., Tung, J., Ward, A.D., Johnston, K., Bonnington, K.E., Donohue, T.J. & Machner, M.P. "A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genes." eLife 12, (2023). [DOI: 10.7554/eLife.86903] DOI Google Scholar
2023	Enright, A.L., Banta, A.B., Ward, R.D., Vazquez, J.R., Felczak, M.M., Wolfe, M.B., TerAvest, M.A., Amador-Noguez, D. & Peters, J.M. "The genetics of aerotolerant growth in an alphaproteobacterium with a naturally reduced genome." mBio 14,6, (2023). [DOI: 10.1128/mbio.01487-23] DOI Google Scholar
2023	Felczak, M.M., Bernard, M.P. & TerAvest, M.A. "Respiration is essential for aerobic growth of Zymomonas mobilis ZM4." mBio 14,6, (2023). [DOI: 10.1128/mbio.02043-23] DOI Google Scholar
2023	Fowler, A.F., Basso, B., Millar, N. & Brinton, W.F. "A simple soil mass correction for a more accurate determination of soil carbon stock changes." Scientific Reports 13,1, 2242+ (2023). [DOI: 10.1038/s41598-023-29289-2] DOI Google Scholar
2023	Fu, X., Gregory, L.M., Weise, S.E. & Walker, B.J. "Integrated flux and pool size analysis in plant central metabolism reveals unique roles of glycine and serine during photorespiration." Nature Plants 9, 169–178+ (2023). [DOI: 10.1038/s41477-022-01294-9] DOI Google Scholar
2023	Gilcher, E.B., Kuch, N., Del Mundo, J.T., Ausman, S.F., Santiago-Martinez, L., Clewett, C.F.M., Gomez, E.W., Gomez, E.D., Root, T.W., Fox, B.G., et al. "Evolution of the cellulose microfibril through gamma-valerolactone-assisted co-solvent and enzymatic hydrolysis." ACS Sustainable Chemistry & Engineering 11, 3270-3283+ (2023). [DOI: 10.1021/acssuschemeng.2c06030] DOI Google Scholar
2023	Groenewald, M., Hittinger, C.T., Bensch, K., Opulente, D.A., Shen, X.-X., Li, Y., LaBella, A.L., Zhou, X., Limtong, S., Jindamorakot, S., et al. "A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina." Studies in Mycology 105, 1-22+ (2023). [DOI: 10.3114/sim.2023.105.01] DOI Google Scholar
2023	Haan, N.L., Benucci, G.N.M., Fiser, C.M., Bonito, G. & Landis, D.A. "Contrasting effects of bioenergy crops on biodiversity." Science Advances 9,38, (2023). [DOI: 10.1126/sciadv.adh7960] DOI Google Scholar
2023	Haan, N.L. & Landis, D.A. "Pest suppression potential varies across 10 bioenergy cropping systems." Global Change Biology – Bioenergy 15,6, 765-775+ (2023). [DOI: 10.1111/gcbb.13053] DOI Google Scholar
2023	Hall, A., Donohue, T. & Peters, J. "Complete sequences of conjugal helper plasmids pRK2013 and pEVS104." microPublication Biology 10.17912/micropub.biology.000882, (2023). [DOI: 10.17912/micropub.biology.000882] DOI Google Scholar
2023	Hall, B.W., Kontur, W.S., Neri, J.C., Gille, D.M., Noguera, D.R. & Donohue, T.J. "Production of carotenoids from aromatics and pretreated lignocellulosic biomass by Novosphingobium aromaticivorans." Applied and Environmental Microbiology 89,12, (2023). [DOI: 10.1128/aem.01268-23] DOI Google Scholar
2023	Howe, A., Stopnisek, N., Dooley, S.K., Yang, F., Grady, K.L. & Shade, A. "Seasonal activities of the phyllosphere microbiome of perennial crops." Nature Communications 14,1, 1039+ (2023). [DOI: 10.1038/s41467-023-36515-y] DOI Google Scholar
2023	Hussain, M.Z., Hamilton, S.K. & Robertson, P. "Soil phosphorus drawdown by perennial bioenergy cropping systems in the Midwestern US." Global Change Biology – Bioenergy 15,2, 254-263+ (2023). [DOI: 10.1111/gcbb.13020] DOI Google Scholar
2023	Im, J.H., Son, S., Kim, W.-C., Kim, K., Mitsuda, N., Ko, J.-H. & Han, K.-H. "Jasmonate activates secondary cell wall biosynthesis through MYC2-MYB46 module." The Plant Journal 117,4, 1099-1114+ (2023). [DOI: 10.1111/tpj.16541] DOI Google Scholar
2023	Jayawardena, D.M., Robertson, P., Sanford, G.R. & Thelen, K.D. "Comparative productivity of six bioenergy cropping systems on marginal lands in the Great Lakes Region, United States." Agronomy Journal 115,5, 2451-2468+ (2023). [DOI: 10.1002/agj2.21416] DOI Google Scholar
2023	Kelliher, J.M., Rudolph, M., Vangay, P., Abbas, A., Borton, M.A., Davenport, E.R., Davenport, K.W., Erazo, N.G., Herman, C., Karstens, L., et al. "Cohort-based learning for microbiome research community standards." Nature Microbiology 8,5, 751-753+ (2023). [DOI: 10.1038/s41564-023-01361-7] DOI Google Scholar
2023	Khana, D.B., Tatli, M., Vazquez, J.R., Weraduwage, S.M., Stern, N., Hebert, A.S., Trujillo, E.A., Stevenson, D.M., Coon, J.J., Sharky, T.D., et al. "Systematic analysis of metabolic bottlenecks in the methylerythritol 4-phosphate (MEP) pathway of Zymomonas mobilis." mSystems 8,2, (2023). [DOI: 10.1128/msystems.00092-23] DOI Google Scholar
2023	Kim, B., Misra, S. & Maravelias, C.T. "Lignocellulosic fuel and chemical co-production." Joule 7,11, 2403-2407+ (2023). [DOI: 10.1016/j.joule.2023.10.002] DOI Google Scholar