Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2023	Kim, S.-J., Bhandari, D.D., Sokoloski, R. & Brandizzi, F. "Immune activation during Pseudomonas infection causes local cell wall remodeling and alters AGP accumulation." The Plant Journal 116,2, 541-557+ (2023). [DOI: 10.1111/tpj.16393] DOI Google Scholar
2023	Kim, S.-J. & Brandizzi, F. "Microscopy and immunocytochemistry-based methods to study cell wall biosynthetic enzymes in the Golgi." in Golgi. Methods in Molecular Biology. vol. 2557 39-51+ (Humana, 2023). [DOI: 10.1007/978-1-0716-2639-9_4] DOI Google Scholar
2023	Kim, S.-J., Zemelis-Durfee, S., McKinley, B., Sokoloski, R., Aufdemberge, W., Mullet, J. & Brandizzi, F. "Cell- and development-specific degradation controls the levels of mixed-linkage glucan in sorghum leaves." The Plant Journal 116,2, 360-374+ (2023). [DOI: 10.1111/tpj.16376] DOI Google Scholar
2023	Knapp, M., Teder, T., Lukas, V., Štrobl, M., Knappová, J., Landis, D.A. & González, E. "Ecologically-Informed Precision Conservation: a framework for increasing biodiversity in intensively managed agricultural landscapes with minimal sacrifice in crop production." Biological Conservation 288, 110343+ (2023). [DOI: j.biocon.2023.110343] DOI Google Scholar	Sustainability
2023	Ko, D.K., Kim, J.Y., Thibault, E.A. & Brandizzi, F. "An IRE1-proteasome system signalling cohort controls cell fate determination in unresolved proteotoxic stress of the plant endoplasmic reticulum." Nature Plants 9,8, 1333-1346+ (2023). [DOI: 10.1038/s41477-023-01480-3] DOI Google Scholar
2023	Krause, D.J. "The evolution of anaerobic growth in Saccharomycotina yeasts." Yeast 40,9, 395-400+ (2023). [DOI: 10.1002/yea.3890] DOI Google Scholar
2023	Lakey, B.D., Alberge, F., Parrell, D., Wright, E.R., Noguera, D.R. & Donohue, T.J. "The role of CenKR in the coordination of Rhodobacter sphaeroides cell elongation and division." mBio 14,4, (2023). [DOI: 10.1128/mbio.00631-23] DOI Google Scholar
2023	Lanier, E.R., Andersen, T.B. & Hamberger, B. "Plant terpene specialized metabolism: complex networks or simple linear pathways?" The Plant Journal 114,5, 1178-1201+ (2023). [DOI: 10.1111/tpj.16177] DOI Google Scholar
2023	Lankiewicz, T.S., Choudhary, H., Gao, Y., Amer, B., Lillington, S.P., Leggieri, P.A., Brown, J.L., Swift, C.L., Lipzen, A., Na, H., et al. "Lignin deconstruction by anaerobic fungi." Nature Microbiology 8,4, 596-610+ (2023). [DOI: 10.1038/s41564-023-01336-8] DOI Google Scholar
2023	Lark, T.J. "Interactions between U.S. biofuels policy and the Endangered Species Act." Biological Conservation 279, 109869+ (2023). [DOI: 10.1016/j.biocon.2022.109869] DOI Google Scholar
2023	Lee, J.H., Lucas, M., Guber, A.K., Li, X. & Kravchenko, A.N. "Interactions among soil texture, pore structure, and labile carbon influence soil carbon gains." Geoderma 439, 116675+ (2023). [DOI: 10.1016/j.geoderma.2023.116675] DOI Google Scholar
2023	Lei, C., Chen, J. & Robertson, P. "Climate cooling benefits of cellulosic bioenergy crops from elevated albedo." Global Change Biology – Bioenergy 15,11, 1373-1386+ (2023). [DOI: 10.1111/gcbb.13098] DOI Google Scholar	Sustainability
2023	Li, H., Kang, X., Yang, M., Kasseney, B.D., Zhou, X., Liang, S., Zhang, X., Wen, J.-L., Yu, B., Liu, N., et al. "Molecular insights into the evolution of woody plant decay in the gut of termites." Science Advances 9,21, (2023). [DOI: 10.1126/sciadv.adg1258] DOI Google Scholar
2023	Li, X., Chou, M.-Y., Bonito, G.M. & Last, R.L. "Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition." Communications Biology 6,1, 917+ (2023). [DOI: 10.1038/s42003-023-05290-3] DOI Google Scholar
2023	Liu, L., Ansari, R.U., Vang-Smith, M., Hittinger, C.T. & Sato, T.K. "A role for ion homeostasis in yeast ionic liquid tolerance." microPublication Biology 2023, 10.17912/micropub.biology.000718+ (2023). [DOI: 10.17912/micropub.biology.000718] DOI Google Scholar
2023	Lucas, M., Gil, J., Robertson, G.P., Ostrom, N.E. & Kravchenko, A. "Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification." Biology and Fertility of Soils. https://doi.org/10.1007/s00374-023-01761-1 (2023). [DOI: 10.1007/s00374-023-01761-1] DOI Google Scholar
2023	Lucas, M., Santiago, J.P., Chen, J., Guber, A. & Kravchenko, A. "The soil pore structure encountered by roots affects plant-derived carbon inputs and fate." New Phytologist 240,2, 515-528+ (2023). [DOI: 10.1111/nph.19159] DOI Google Scholar
2023	Marshall, B., Amritkar, K., Wolfe, M., Kacar, B. & Landick, R. "Evolutionary flexibility and rigidity in the bacterial methylerythritol phosphate (MEP) pathway." Frontiers in Microbiology 14, 1286626+ (2023). [DOI: 10.3389/fmicb.2023.1286626] DOI Google Scholar
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage." Phytobiomes Journal 7,2, 184-197+ (2023). [DOI: 10.1094/pbiomes-08-22-0046-fi] DOI Google Scholar	Sustainability
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Genome-sequenced bacterial collection from sorghum aerial root mucilage." Microbiology Resource Announcements 12,12, (2023). [DOI: 10.1128/MRA.00468-23] DOI Google Scholar
2023	Mechan-Llontop, M.E., Mullet, J. & Shade, A. "Genome-sequenced bacterial collection from sorghum epicuticular wax." Microbiology Resource Announcements 12,12, (2023). [DOI: 10.1128/MRA.00484-23] DOI Google Scholar
2023	Muro-Villanueva, F., Pysh, L.D., Kim, H., Bouse, T., Ralph, J., Luo, Z., Cooper, B.R., Jannasch, A.S., Zhang, Z., Gu, C., et al. "Pinoresinol rescues developmental phenotypes of Arabidopsis phenylpropanoid mutants overexpressing FERULATE 5-HYDROXYLASE." Proceedings of the National Academy of Sciences of the United States of America 120,31, (2023). [DOI: 10.1073/pnas.2216543120] DOI Google Scholar
2023	Myers, K.S., Ingle, A.T., Walters, K.A., Fortney, N.W., Scarborough, M.J., Donohue, T.J. & Noguera, D.R. "Comparison of metagenomes from fermentation of various agroindustrial residues suggests a common model of community organization." Frontiers in Bioengineering and Biotechnology 11, 1197175+ (2023). [DOI: 10.3389/fbioe.2023.1197175] DOI Google Scholar
2023	Nalabothu, R.L., Fisher, K.J., LaBella, A.L., Meyer, T.A., Opulente, D.A., Wolters, J.F., Rokas, A. & Hittinger, C.T. "Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts." Molecular Biology and Evolution 40,6, (2023). [DOI: 10.1093/molbev/msad111] DOI Google Scholar
2023	O'Banion, B.S., Jones, P., Demetros, A.A., Kelley, B.R., Knoor, L.H., Wagner, A.S., Chen, J.-G., Muchero, W., Reynolds, T.B., Jacobson, D., et al. "Plant myo-inositol transport influences bacterial colonization phenotypes." Current Biology 33,15, 3111-3124+ (2023). [DOI: 10.1016/j.cub.2023.06.057] DOI Google Scholar