Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2011	Imam, S., Yilmaz, S., Sohmen, U., Gorzalski, A.S., Reed, J.L., Noguera, D.R. & Donohue, T.J. "iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network." BMC Systems Biology 5, 116+ (2011). [DOI: 10.1186/1752-0509-5-116] DOI Google Scholar	Conversion
2011	Iwai, S., Chai, B., Jesus, E. da C., Penton, R., Lee, T.K., Cole, J.R. & Tiedje, J.M. "Gene-targeted-metagenomics (GT-metagenomics) to explore the extensive diversity of genes of interest in microbial communities." in Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 235-244+ (Wiley-Blackwell, 2011). Google Scholar	Sustainability
2011	Jakubowski, A.R., Casler, M.D. & Jackson, R.D. "Has selection for improved agronomic traits made reed canarygrass invasive?" PLOS ONE 6,10, (2011). [DOI: 10.1371/journal.pone.0025757] DOI Google Scholar	Feedstocks, Sustainability
2011	Jakubowski, A.R., Jackson, R.D., Johnson, R.C., Hu, J. & Casler, M.D. "Genetic diversity and population structure of Eurasian populations of reed canarygrass: cytotypes, cultivars, and interspecific hybrids." Crop and Pasture Science 62,11, 982-991+ (2011). [DOI: 10.1071/CP11232] DOI Google Scholar	Feedstocks, Sustainability
2011	Jensen, J.K., Kim, H., Cocuron, J.-C., Orler, R., Ralph, J. & Wilkerson, C.G. "The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis." The Plant Journal 66,3, 387-400+ (2011). [DOI: 10.1111/j.1365-313X.2010.04475.x] DOI Google Scholar	Feedstocks
2011	Jin, M., Balan, V., Gunawan, C. & Dale, B.E. "Consolidated bioprocessing (CBP) performance of Clostridium phytofermentans on AFEX-treated corn stover for ethanol production." Biotechnology and Bioengineering 108,6, 1290-1297+ (2011). [DOI: 10.1002/bit.23059] DOI Google Scholar	Deconstruction
2011	Kallenbach, C. & Grandy, S. "Controls over soil microbial biomass responses to carbon amendments in agricultural systems: a meta-analysis." Agriculture, Ecosystems, and Environment 144,1, 241-252+ (2011). [DOI: 10.1016/j.agee.2011.08.020] DOI Google Scholar	Sustainability
2011	Kim, J., Reed, J.L. & Maravelias, C.T. "Large-scale bi-level strain design approaches and mixed-integer programming solution techniques." PLOS ONE 6,9, (2011). [DOI: 10.1371/journal.pone.0024162] DOI Google Scholar	Conversion
2011	Kim, S. & Dale, B.E. "Indirect land use change for biofuels: testing predictions and improving analytical methodologies." Biomass and Bioenergy 35,7, 3235-3240+ (2011). [DOI: 10.1016/j.biombioe.2011.04.039] DOI Google Scholar	Sustainability
2011	Klassen, J.L., Adams, S.M., Bramhacharya, S., Giles, S.S., Goodwin, L.A., Woyke, T. & Currie, C.R. "Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb." Journal of Bacteriology 193,24, 6999-7000+ (2011). [DOI: 10.1128/JB.06257-11] DOI Google Scholar	Deconstruction
2011	Ko, J.-H., Kim, H.-T. & Han, K.-H. "Biotechnological improvement of lignocellulosic feedstock for enhanced biofuel productivity and processing." Plant Biotechnology Reports 5, 1-7+ (2011). [DOI: 10.1007/s11816-010-0159-7] DOI Google Scholar	Feedstocks
2011	Ko, J.-H., Prassinos, C., Keathley, D. & Han, K.-H. "Novel aspects of transcriptional regulation in the winter survival and maintenance mechanism of poplar." Tree Physiology 31,2, 208-255+ (2011). [DOI: 10.1093/treephys/tpq109] DOI Google Scholar	Feedstocks
2011	Kontur, W.S., Ziegelhoffer, E.C., Spero, M.S., Imam, S., Noguera, D.R. & Donohue, T.J. "Pathways involved in reductant distribution during photobiological H2 production by Rhodobacter sphaeroides." Applied and Environmental Microbiology 77,20, 7425-7429+ (2011). [DOI: 10.1128/AEM.05273-11] DOI Google Scholar	Conversion
2011	Kravchenko, A.N. & Robertson, P. "Whole-profile soil carbon stocks: the danger of assuming too much from analyses of too little." Soil Science Society of America Journal 75,1, 235-240+ (2011). [DOI: 10.2136/sssaj2010.0076] DOI Google Scholar	Sustainability
2011	Lennen, R.M., Kruziki, M.A., Kumar, K., Zinkel, R.A., Burnum, K.E., Lipton, M.S., Hoover, S.W., Ranatunga, D.R., Wittkopp, T.M., Marner, W.D., et al. "Membrane stresses induced by overproduction of free fatty acids in Escherichia coli." Applied and Environmental Microbiology 77,22, 8114-8128+ (2011). [DOI: 10.1128/AEM.05421-11] DOI Google Scholar	Conversion
2011	Levine, U.Y., Teal, T.K., Robertson, P. & Schmidt, T.M. "Agriculture’s impact on microbial diversity and associated fluxes of carbon dioxide and methane." The International Society for Microbial Ecology Journal 5, 1683-1691+ (2011). [DOI: 10.1038/ismej.2011.40] DOI Google Scholar	Sustainability
2011	Li, C., Cheng, G., Balan, V., Kent, M.S., Ong, M., Chundawat, S.P.S., Sousa, L. daC., Melnichenko, Y.B., Dale, B.E., Simmons, B.A., et al. "Influence of physico-chemical changes on enzymatic digestibility of ionic liquid and AFEX pretreated corn stover." Bioresource Technology 102,13, 6928-6936+ (2011). [DOI: 10.1016/j.biortech.2011.04.005] DOI Google Scholar	Deconstruction
2011	Li, L.-L., Taghavi, S., McCorkle, S., Zhang, Y.-B., Blewitt, M., Brunecky, R., Adney, W., Himmel, M., Brumm, P., Drinkwater, C., et al. "Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases." Biotechnology for Biofuels 4,23, 23+ (2011). [DOI: 10.1186/1754-6834-4-23] DOI Google Scholar	Deconstruction
2011	Liang, C. & Balser, T.C. "Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy." Nature Reviews Microbiology 9, 75+ (2011). [DOI: 10.1038/nrmicro2386-c1] DOI Google Scholar	Sustainability
2011	Liang, C., Sanford, G.R., Jackson, R.D. & Balser, T.C. "Potential legacy effects of biofuel cropping systems on soil microbial communities in southern Wisconsin." Agricultural Sciences 2,2, 131-137+ (2011). [DOI: 10.4236/as.2011.22019] DOI Google Scholar	Sustainability
2011	Liang, C., Zhang, X., Wei, L., He, H., Higbee, A.J. & Balser, T.C. "Investigation of the molecular ion structure for aldononitrile acetate derivatized muramic acid." Journal of Microbiological Methods 86,2, 224-230+ (2011). [DOI: 10.1016/j.mimet.2011.05.007] DOI Google Scholar	Sustainability
2011	Liu, J. & Wolk, P. "Mutations in genes patA and patL of Anabaena sp strain PCC 7120 result in similar phenotypes, and the proteins encoded by those genes may interact." Journal of Bacteriology 193,21, 6070-6074+ (2011). [DOI: 10.1128/Jb.05523-11] DOI Google Scholar	Conversion
2011	Lu, F. & Ralph, J. "Solution-state NMR of lignocellulosic biomass." Journal of Biobased Materials and Bioenergy 5,2, 169-180+ (2011). [DOI: 10.1166/jbmb.2011.1131] DOI Google Scholar	Feedstocks
2011	Malmstrom, C.M., Melcher, U. & Bosque-Pérez, N.A. "The expanding field of plant virus ecology: historical foundations, knowledge gaps, and research directions." Virus Research 159,2, 84-94+ (2011). [DOI: 10.1016/j.virusres.2011.05.010] DOI Google Scholar	Sustainability
2011	Meehan, T.D., Werling, B.P., Landis, D.A. & Gratton, C. "Agricultural landscape simplification and insecticide use in the Midwestern United States." Proceedings of the National Academy of Sciences of the United States of America 108,28, 11500-11505+ (2011). [DOI: 10.1073/pnas.1100751108] DOI Google Scholar	Sustainability