Publications

Swinton, S.M., Babcock, B.A., James, L.K. & Bandaru, V. "Higher US crop prices trigger little area expansion so marginal land for biofuel crops is limited." Energy Policy 39,9, 5254–5258+ (2011). [DOI: 10.1016/j.enpol.2011.05.039]

Syswerda, S.P., Corbin, A.T., Mokma, D.L., Kravchenko, A.N. & Robertson, G.P. "Agricultural management and soil carbon storage in surface vs. deep layers." Soil Science Society of America Journal 75,1, 92+ (2011). [DOI: 10.2136/sssaj2009.0414]

Tobimatsu, Y., Davidson, C.L., Grabber, J.H. & Ralph, J. "Fluorescence-tagged monolignols: synthesis, and application to studying in vitro lignification." Biomacromolecules 12,5, 1752–1761+ (2011). [DOI: 10.1021/bm200136x]

Troncoso-Ponce, M., Kilaru, A., Cao, X., Durrett, T., Fan, J., Jensen, J., Thrower, N., Pauly, M., Wilkerson, C. & Ohlrogge, J. "Comparative deep transcriptional profiling of four developing oilseeds." The Plant Journal 68,6, 1014–1027+ (2011). [DOI: 10.1111/j.1365-313X.2011.04751.x]

Van Acker, R., Storme, V., Goeminne, G., Ivens, B., Custers, R., Aerts, D., Soetaert, W., Ralph, J., Santoro, N., Leple, J.-C., et al. "Science, society and biosafety of a field trial with transgenic biofuel poplars." BMC Proceedings 5,Suppl 7, 123+ (2011). [DOI: 10.1186/1753-6561-5-S7-I23]

Varbanova, M., Porter, K., Lu, F., Ralph, J., Hammerschmidt, R., Jones, D. & Day, B. "Molecular and biochemical basis for stress-induced accumulation of free and bound p-coumaraldehyde in cucumber." Plant Physiology 157, 1056–1066+ (2011). [DOI: 10.1104/pp.111.184358]

Wagner, A., Tobimatsu, Y., Phillips, L., Flint, H., Torr, K., Donaldson, L., Pears, L. & Ralph, J. "CCoAOMT suppression modifies lignin composition in Pinus radiata." The Plant Journal 67, 119–129+ (2011). [DOI: 10.1111/j.1365-313X.2011.04580.x]

Walton, J., Banerjee, G. & Car, S. "GENPLAT: an automated platform for biomass enzyme discovery and cocktail optimization." Journal of Visualized Experiments 56, e3314+ (2011). [DOI: 10.3791/3314]

Weise, S.E., van Wijk, K.J. & Sharkey, T.D. "The role of transitory starch in C3, CAM, and C4 metabolism and opportunities for engineering leaf starch accumulation." Journal of Experimental Botany 62,9, 3109–3118+ (2011). [DOI: 10.1093/jxb/err035]

Weng, J.-K., Akiyama, T., Ralph, J. & Chapple, C. "Independent recruitment of an O-methyltransferase for syringyl lignin biosynthesis in Selaginella moellendorffii." The Plant Cell 23, 2708–2724+ (2011). [DOI: 10.1105/tpc.110.081547]

Werling, B.P., Meehan, T.D., Gratton, C. & Landis, D.A. "Influence of habitat and landscape perenniality on insect natural enemies in three candidate biofuel crops." Biological Control 59,2, 304–312+ (2011). [DOI: 10.1016/j.biocontrol.2011.06.014]

Werling, B.P., Meehan, T.D., Robertson, B.A., Gratton, C. & Landis, D.A. "Biocontrol potential varies with biofuel-crop plant community and landscape perenniality." Global Change Biology – Bioenergy 3,5, 347–359+ (2011). [DOI: 10.1111/j.1757-1707.2011.01092.x]

Wohlbach, D.J., Kuo, A., Sato, T.K., Potts, K.M., Salamov, A.A., LaButti, K.M., Sun, H., Clum, A., Pangilinan, J.L., Lindquist, E.A., et al. "Comparative genomics of xylose-fermenting fungi for enhanced biofuel production." Proceedings of the National Academy of Sciences of the United States of America 108,32, 13212–13217+ (2011). [DOI: 10.1073/pnas.1103039108]

Wymelenberg, A.V., Gaskell, J., Mozuch, M., Bondurant, S.S., Sabat, G., Ralph, J., Skyba, O., Mansfield, S.D., Blanchette, R.A., Grigoriev, I.V., et al. "Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species." Applied and Environmental Microbiology 77,13, 4499–507+ (2011). [DOI: 10.1128/AEM.00508-11]

Xia, J., Jones, D., Lau, M.W., Yuan, Y.-J., Dale, B.E. & Balan, V. "Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity." Biotechnology and Bioengineering 108,1, 12–21+ (2011). [DOI: 10.1002/bit.22910]

Xu, C., Liang, C., Wullschleger, S., Wilson, C. & McDowell, N. "Importance of feedback loops between soil inorganic nitrogen and microbial communities in the heterotrophic soil respiration response to global warming." Nature Reviews Microbiology 9,3, 222–222+ (2011). [DOI: 10.1038/nrmicro2439-c1]

Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 1. Catalyzed reactions with wood models and wood polymers." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 131–143+ (2011). [DOI: 10.1515/HF.2011.028]

Yelle, D.J., Ralph, J. & Frihart, C.R. "Delineating pMDI-model reactions with loblolly pine via solution-state NMR spectroscopy. Part 2. Non-catalyzed reactions with the wood cell wall." Holzforschung: International Journal of the Biology, Chemistry, Physics, and Technology of Wood 65,2, 145–154+ (2011). [DOI: 10.1515/HF.2011.029]

Yelle, D.J., Wei, D., Ralph, J. & Hammel, K.E. "Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta." Environmental Microbiology 13,4, 1091–1100+ (2011). [DOI: 10.1111/j.1462-2920.2010.02417.x]

Youngquist, T., Lennen, R.M., Ranatunga, D.R., Bothfeld, W.H., Marner, W.D., II & Pfleger, B.F. "Kinetic modeling of free fatty acid production in Escherichia coli based on continuous cultivation of a plasmid free strain." Biotechnology and Bioengineering 109,6, 1518–27+ (2011). [DOI: 10.1002/bit.24420]

Zalapa, J.E., Price, D.L., Kaeppler, S.M., Tobias, C.M., Okada, M. & Casler, M.D. "Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars." Theoretical and Applied Genetics 122,4, 805–17+ (2011). [DOI: 10.1007/s00122-010-1488-1]

Zenone, T., Chen, J., Deal, M.W., Wilske, B., Jasrotia, P., Xu, J., Bhardwaj, A.K., Hamilton, S.K. & Robertson, P. "CO2 fluxes of transitional bioenergy crops: effect of land conversion during the first year of cultivation." Global Change Biology – Bioenergy 3,5, 401–412+ (2011). [DOI: 10.1111/j.1757-1707.2011.01098.x]

Zhang, X., Izaurralde, C., Arnold, J.G., Sammons, N.B., Manowitz, D.H., Thomson, A.M. & Williams, J.R. "Comment on “Modeling miscanthus in the Soil and Water Assessment Tool (SWAT) to simulate its water quality effects as a bioenergy crop”." Environmental Science & Technology 45,14, 6211–6212+ (2011). [DOI: 10.1021/es201463x]

Zhang, X., Liang, F., Yu, B. & Zong, Z. "Explicitly integrating parameter, input and structure uncertainties into Bayesian Neural Networks for probabilistic hydrologic forecasting." Journal of Hydrology 409,3-4, 696–709+ (2011). [DOI: 10.1016/j.jhydrol.2011.09.002]

Zhang, Y., Zalapa, J., Jakubowski, A., Price, D., Acharya, A., Wei, Y., Brummer, E., Kaeppler, S. & Casler, M. "Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences." Genetica 139,7, 933–948+ (2011). [DOI: 10.1007/s10709-011-9597-6]