Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2012	Lennen, R.M. & Pfleger, B.F. "Engineering Escherichia coli to synthesize free fatty acids." Trends in Biotechnology 30,12, 659-67+ (2012). [DOI: 10.1016/j.tibtech.2012.09.006] DOI Google Scholar	Conversion
2012	Li, M., Foster, C.E., Pu, Y., Holmes, D., Saffron, C., Ragauskas, A. & Hodge, D.B. "Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes." Biotechnology for Biofuels 5, 38+ (2012). [DOI: 10.1186/1754-6834-5-38] DOI Google Scholar	Deconstruction
2012	Liang, C., Duncan, D.S., Balser, T.C., Tiedje, J.M. & Jackson, R.D. "Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA." Soil Biology and Biochemistry 57, 939-942+ (2012). [DOI: 10.1016/j.soilbio.2012.09.006] DOI Google Scholar	Sustainability
2012	Liang, C., Jesus, E. da C., Duncan, D.S., Jackson, R.D., Tiedje, J.M. & Balser, T.C. "Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: impact of crop species and soil properties." Applied Soil Ecology 54, 24-31+ (2012). [DOI: 10.1016/j.apsoil.2011.11.015] DOI Google Scholar	Sustainability
2012	Liang, C., Read, H.W. & Balser, T.C. "GC-based detection of aldononitrile acetate derivatized glucosamine and muramic acid for microbial residue determination in soil." Journal of Visualized Experiments (2012). [DOI: 10.3791/3767] DOI Google Scholar	Sustainability
2012	Liepman, A.H. & Cavalier, D.M. "The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives." Frontiers in Plant Science 3, 109+ (2012). [DOI: 10.3389/fpls.2012.00109] DOI Google Scholar	Feedstocks
2012	Long, T.M., Su, Y.-K.K., Headman, J., Higbee, A., Willis, L.B. & Jeffries, T.W. "Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast, Spathaspora passalidarum." Applied and Environmental Microbiology 78,16, 5492-54500+ (2012). [DOI: 10.1128/AEM.00374-12] DOI Google Scholar	Conversion
2012	Lu, F., Wei, L., Azarpira, A. & Ralph, J. "Rapid syntheses of dehydrodiferulates via biomimetic radical coupling reactions of ethyl ferulate." Journal of Agricultural and Food Chemistry 60, 8272-8277+ (2012). [DOI: 10.1021/jf302140k] DOI Google Scholar	Feedstocks, Deconstruction
2012	Mansfield, S.D., Kim, H., Lu, F. & Ralph, J. "Whole plant cell wall characterization using solution-state 2D NMR." Nature Protocols 7, 1579-1589+ (2012). [DOI: 10.1038/nprot.2012.064] DOI Google Scholar	Feedstocks
2012	Masukawa, H., Kitashima, M., Inoue, K., Sakurai, H. & Hausinger, R.P. "Genetic engineering of cyanobacteria to enhance biohydrogen production from sunlight and water." Ambio 41,(Supplement 2), 169-173+ (2012). [DOI: 10.1007/s13280-012-0275-4] DOI Google Scholar	Conversion
2012	Masukawa, H., Mochimaru, M. & Takaichi, S. "Characterization of carotenogenesis genes in the cyanobacterium Anabaena sp. PCC 7120." in Methods in Molecular Biology. vol. 892 297-306+ (Humana Press, 2012). [DOI: 10.1007/978-1-61779-879-5_18] DOI Google Scholar	Conversion
2012	McLaughlin, L.S., Haft, R.J. & Forest, K.T. "Structural insights into the Type II secretion nanomachine." Current Opinion in Structural Biology 22,2, 208-16+ (2012). [DOI: 10.1016/j.sbi.2012.02.005] DOI Google Scholar	Conversion
2012	Mead, D., Lucas, S., Copeland, A., Lapidus, A., Cheng, J.-F., Bruce, D.C., Goodwin, L.A., Pitluck, S., Chertkov, O., Zhang, X., et al. "Complete genome sequence of Paenibacillus strain Y4.12MC10, a novel Paenibacillus lautus strained isolated from Obsidian Hot Spring in Yellowstone National Park." Standards in Genomic Science 6, 366-385+ (2012). [DOI: 10.4056/sigs.2605792] DOI Google Scholar	Deconstruction
2012	Meehan, T.D., Werling, B.P., Landis, D.A. & Gratton, C. "Pest-suppression potential of Midwestern landscapes under contrasting bioenergy scenarios." PLOS ONE 7,7, (2012). [DOI: 10.1371/journal.pone.0041728.g001] DOI Google Scholar	Sustainability
2012	Miao, R., Hennessy, D.A. & Babcock, B.A. "Investment in cellulosic biofuel refineries: Do waivable biofuel mandates matter?" American Journal of Agricultural Economics 9,3, 750-762+ (2012). [DOI: 10.1093/ajae/aar142] DOI Google Scholar	Sustainability
2012	Miesel, J.R., Renz, M.J., Doll, J.E. & Jackson, R.D. "Effectiveness of weed management methods in establishment of switchgrass and a native species mixture for biofuels in Wisconsin." Biomass and Bioenergy 36, 121-131+ (2012). [DOI: 10.1016/j.biombioe.2011.10.018] DOI Google Scholar	Sustainability
2012	Mitchell, J.C., Rutkoski, T.J., Bannen, R.M. & Phillips, G.N. Combined computational and experimental approaches to sequence-based design of protein thermal stability Thermostable Proteins: Structural Stability and Design. 105-116+ (CRC Press, 2012). Google Scholar
2012	Muttoni, G., Johnson, J.M., Santoro, N., Rhiner, C.J., von Mogel, K.J.H., Kaeppler, S.M. & de Leon, N. "A high-throughput core sampling device for the evaluation of maize stalk composition." Biotechnology for Biofuels 5,1, 27+ (2012). [DOI: 10.1186/1754-6834-5-27] DOI Google Scholar	Feedstocks
2012	Nadakuduti, S.S., Pollard, M., Kosma, D.K., Allen, C., Ohlrogge, J.B. & Barry, C.S. "Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato." Plant Physiology 159,3, 945-960+ (2012). [DOI: 10.1104/pp.112.198374] DOI Google Scholar	Feedstocks
2012	Nikièma, P., Rothstein, D.E. & Miller, R.O. "Initial greenhouse gas emissions and nitrogen leaching losses associated with converting pastureland to short-rotation woody bioenergy crops in northern Michigan, USA." Biomass and Bioenergy 39, 413-426+ (2012). [DOI: 10.1016/j.biombioe.2012.01.037] DOI Google Scholar	Sustainability
2012	O'Neill, B.J., Gurbuz, E.I. & Dumesic, J.A. "Reaction kinetics studies of the conversions of formic acid and butyl formate over carbon-supported palladium in the liquid phase." Journal of Catalysis 290, 193-201+ (2012). [DOI: 10.1016/j.jcat.2012.03.014,] DOI Google Scholar	Conversion
2012	Pell, J., Hintze, A., Canino-Koning, R., Howe, A., Tiedje, J.M. & Brown, T. "Scaling metagenome sequence assembly with probabilistic de Bruijn graphs." Proceedings of the National Academy of Sciences of the United States of America 109,33, 13272-13277+ (2012). [DOI: 10.1073/pnas.1121464109] DOI Google Scholar	Sustainability
2012	Poskar, H., Huege, J., Krach, C., Franke, M., Shachar-Hill, Y. & Junker, B. "iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis." BMC Bioinformatics 13,1, 295+ (2012). [DOI: 10.1186/1471-2105-13-295] DOI Google Scholar	Feedstocks
2012	Ralph, J., Akiyama, T., Coleman, D.C. & Mansfield, S.D. "Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar." BioEnergy Research 5,4, 1009-1019+ (2012). [DOI: 10.1007/s12155-012-9218-y] DOI Google Scholar	Feedstocks
2012	Reed, J.L. "Shrinking the metabolic solution space using experimental datasets." PLOS Computational Biology 8,8, (2012). [DOI: 10.1371/Journal.Pcbi.1002662] DOI Google Scholar	Conversion