Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2012	Hansey, C.N., Vaillancourt, B., Sekhon, R.S., de Leon, N., Kaeppler, S.M. & Buell, R. "Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing." PLOS ONE 7,3, (2012). [DOI: 10.1371/journal.pone.0033071] DOI Google Scholar	Feedstocks
2012	Hao, X., Thelen, K.D. & Gao, J. "Prediction of the ethanol yield of dry-grind maize grain using near infrared spectroscopy." Biosystems Engineering 112,3, 161-170+ (2012). [DOI: 10.1016/j.biosystemseng.2012.03.007] DOI Google Scholar	Sustainability
2012	Harholt, J., Jensen, J.K., Verhertbruggen, Y., Sogaard, C., Bernard, S., Nafisi, M., Poulsen, C.P., Geshi, N., Sakuragi, Y., Driouich, A., et al. "ARAD proteins associated with pectic Arabinan biosynthesis form complexes when transiently overexpressed in planta." Planta 236,1, 115-128+ (2012). [DOI: 10.1007/S00425-012-1592-3] DOI Google Scholar	Feedstocks
2012	Hittinger, C.T. "Endless rots most beautiful." Science 336, 1649-1650+ (2012). [DOI: 10.1126] DOI Google Scholar	Conversion
2012	Hoover, S.W., Youngquist, T., Angart, P.A., Withers, S.T., Lennen, R.M. & Pfleger, B.F. "Isolation of improved free fatty acid overproducing strains of Escherichia coli via Nile red based high-throughput screening." Environmental Progress & Sustainable Energy 31,1, 17-23+ (2012). [DOI: 10.1002/ep.10599] DOI Google Scholar	Conversion
2012	Hufford, M.B., Xu, X., van Heerwaarden, J., Pyhajarvi, T., Chia, J.-M., Cartwright, R.A., Elshire, R.J., Glaubitz, J.C., Guill, K.E., Kaeppler, S.M., et al. "Comparative population genomics of maize domestication and improvement." Nature Genetics 44,7, 808-11+ (2012). [DOI: 10.1038/ng.2309] DOI Google Scholar	Feedstocks
2012	Izaurralde, R.C., McGill, W.B. & Williams, J.R. "Development and application of the EPIC Model for carbon cycle, greenhouse gas mitigation, and biofuel studies." in Managing Agricultural Greenhouse Gases: Coordinated Agricultural Research through GRACEnet to Address our Changing Climate. 293-308+ (Academic Press, 2012). [DOI: 10.1016/B978-0-12-386897-8.00017-6] DOI Google Scholar	Sustainability
2012	Jensen, J.K., Schultink, A., Keegstra, K., Wilkerson, C.G. & Pauly, M. "RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis." Molecular Plant 5,5, 984-992+ (2012). [DOI: 10.1093/mp/sss032] DOI Google Scholar	Feedstocks
2012	Jin, H. & Anderson, C.W. "Developing assessments for a learning progression on carbon-transforming processes in socio-ecological systems." in Learning progressions in science: Current challenges and future directions. 151-181+ (Sense Publishers, 2012). Google Scholar
2012	Jin, M., Balan, V., Gunawan, C. & Dale, B.E. "Quantitatively understanding reduced xylose fermentation performance in AFEX™ treated corn stover hydrolysate using Saccharomyces cerevisiae 424A (LNH-ST) and Escherichia coli KO11." Bioresource Technology 111, 294–300+ (2012). [DOI: 10.1016/j.biortech.2012.01.154] DOI Google Scholar	Deconstruction
2012	Jin, M., Gunawan, C., Balan, V. & Dale, B.E. "Consolidated bioprocessing (CBP) of AFEX™-pretreated corn stover for ethanol production using Clostridium phytofermentans at a high solids loading." Biotechnology and Bioengineering 109,8, 1929-1936+ (2012). [DOI: 10.1002/bit.24458] DOI Google Scholar	Deconstruction
2012	Jin, M., Gunawan, C., Balan, V., Lau, M.W. & Dale, B.E. "Simultaneous saccharification and co-fermentation (SSCF) of AFEX™ pretreated corn stover for ethanol production using commercial enzymes and Saccharomyces cerevisiae 424A(LNH-ST)." Bioresource Technology 110, 587–594+ (2012). [DOI: 10.1016/j.biortech.2012.01.150] DOI Google Scholar	Deconstruction
2012	Jin, M., Gunawan, C., Uppugundla, N., Balan, V. & Dale, B.E. "A novel integrated biological process for cellulosic ethanol production featuring high ethanol productivity, enzyme recycling and yeast cells reuse." Energy & Environmental Science 5,5, 7168-7175+ (2012). [DOI: 10.1039/c2ee03058f] DOI Google Scholar	Deconstruction
2012	Kaeppler, S. "Heterosis: many genes, many mechanisms—end the search for an undiscovered unifying theory." ISRN Botany 2012, (2012). [DOI: 10.5402/2012/682824] DOI Google Scholar	Feedstocks
2012	Kashefi, K. "Hyperthermophiles: metabolic diversity and biotechnological applications." in Extremophiles: Microbiology and Biotechnology. 183-232+ (Caister Academic Press, 2012). Google Scholar	Conversion
2012	Kaur, H., Shaker, K., Heinzel, N., Ralph, J., Galis, I. & Baldwin, I.T. "Environmental stresses of field growth allow cinnamyl alcohol dehydrogenase-deficient Nicotiana attenuata plants to compensate for their structural deficiencies." Plant Physiology 159, 1545-1570+ (2012). [DOI: 10.1104/pp.112.196717] DOI Google Scholar	Feedstocks
2012	Kim, J. & Reed, J.L. "RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations." Genome Biology 13,9, (2012). [DOI: 10.1186/gb-2012-13-9-r78] DOI Google Scholar	Conversion
2012	Kim, S., Dale, B.E. & Ong, R.G. "An alternative approach to indirect land use change: allocating greenhouse gas effects among different uses of land." Biomass and Bioenergy 46, 447-452+ (2012). [DOI: 10.1016/j.biombioe.2012.07.015] DOI Google Scholar	Sustainability
2012	Kim, S.-J. & Brandizzi, F. "News and views into the SNARE complexity in Arabidopsis." Frontiers in Plant Science 3, 28+ (2012). [DOI: 10.3389/fpls.2012.00028] DOI Google Scholar	Feedstocks
2012	Kim, W.-C., Ko, J.-H. & Han, K.-H. "Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis." Plant Molecular Biology 78,4-5, 489-501+ (2012). [DOI: 10.1007/s11103-012-9880-7] DOI Google Scholar	Feedstocks
2012	Ko, J.-H., Kim, H.-T., Hwang, I. & Han, K.-H. "Tissue-type-specific transcriptome analysis identifies developing xylem-specific promoters in poplar." Plant Biotechnology Journal 10,5, 587-596+ (2012). [DOI: 10.1111/j.1467-7652.2012.00690.x] DOI Google Scholar	Feedstocks
2012	Ko, J.-H., Kim, W.-C., Kim, J.-Y., Ahn, S.-J. & Han, K.-H. "MYB46-mediated transcriptional regulation of secondary wall biosynthesis." Molecular Plant 5,5, 961-963+ (2012). [DOI: 10.1093/mp/sss076] DOI Google Scholar	Feedstocks
2012	Kontur, W.S., Noguera, D.D. & Donohue, T.J. "Maximizing reductant flow into microbial H2 production." Current Opinion in Biotechnology 23,3, 382-389+ (2012). [DOI: 10.1016/j.copbio.2011.10.003,] DOI Google Scholar	Conversion
2012	Landis, D.A., Gardiner, M.M. & Tompkins, J. "Using native plant species to diversify agriculture." in Biodiversity and Insect Pests: Key Issues for Sustainable Management. 276-292+ (John Wiley & Sons, Ltd, 2012). [DOI: 10.1002/9781118231838.ch17] DOI Google Scholar	Sustainability
2012	Lau, M.W., Bals, B.D., Chundawat, S.P.S., Jin, M., Gunawan, C., Balan, V., Jones, D. & Dale, B.E. "An integrated paradigm for cellulosic biorefineries: utilization of lignocellulosic biomass as self-sufficient feedstocks for fuel, food precursors and saccharolytic enzyme production." Energy & Environmental Science 5,5, 7100-7110+ (2012). [DOI: 10.1039/C2EE03596K] DOI Google Scholar	Deconstruction