Publications

Lennen, R.M. & Pfleger, B.F. "Engineering Escherichia coli to synthesize free fatty acids." Trends in Biotechnology 30,12, 659–67+ (2012). [DOI: 10.1016/j.tibtech.2012.09.006]

Li, M., Foster, C., Pu, Y., Holmes, D., Saffron, C., Ragauskas, A. & Hodge, D. "Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes." Biotechnology for Biofuels 5, 38+ (2012). [DOI: 10.1186/1754-6834-5-38]

Liang, C., Duncan, D.S., Balser, T.C., Tiedje, J.M. & Jackson, R.D. "Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA." Soil Biology and Biochemistry 57, 939–942+ (2012). [DOI: 10.1016/j.soilbio.2012.09.006]

Liang, C., Jesus, E. da C., Duncan, D.S., Jackson, R.D., Tiedje, J.M. & Balser, T.C. "Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: impact of crop species and soil properties." Applied Soil Ecology 54, 24–31+ (2012). [DOI: 10.1016/j.apsoil.2011.11.015]

Liang, C., Read, H.W. & Balser, T.C. "GC-based detection of aldononitrile acetate derivatized glucosamine and muramic acid for microbial residue determination in soil." Journal of Visualized Experiments e3767+ (2012). [DOI: 10.3791/3767]

Liepman, A.H. & Cavalier, D.M. "The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives." Frontiers in Plant Science 3, 109+ (2012). [DOI: 10.3389/fpls.2012.00109]

Long, T.M., Su, Y.-K.K., Headman, J., Higbee, A., Willis, L.B. & Jeffries, T.W. "Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast, Spathaspora passalidarum." Applied and Environmental Microbiology 78,16, 5492–54500+ (2012). [DOI: 10.1128/AEM.00374-12]

Lu, F., Wei, L., Azarpira, A. & Ralph, J. "Rapid syntheses of dehydrodiferulates via biomimetic radical coupling reactions of ethyl ferulate." Journal of Agricultural and Food Chemistry 60, 8272–8277+ (2012). [DOI: 10.1021/jf302140k]

Mansfield, S.D., Kim, H., Lu, F. & Ralph, J. "Whole plant cell wall characterization using solution-state 2D NMR." Nature Protocols 7, 1579–1589+ (2012). [DOI: 10.1038/nprot.2012.064]

Masukawa, H., Kitashima, M., Inoue, K., Sakurai, H. & Hausinger, R.P. "Genetic engineering of cyanobacteria to enhance biohydrogen production from sunlight and water." Ambio 41,(Supplement 2), 169–173+ (2012). [DOI: 10.1007/s13280-012-0275-4]

Masukawa, H., Mochimaru, M. & Takaichi, S. "Characterization of carotenogenesis genes in the cyanobacterium Anabaena sp. PCC 7120." in Methods in Molecular Biology. vols. 892 297–306+ (Humana Press, 2012). [DOI: 10.1007/978-1-61779-879-5_18]

McLaughlin, L.S., Haft, R.J. & Forest, K.T. "Structural insights into the Type II secretion nanomachine." Current Opinion in Structural Biology 22,2, 208–16+ (2012). [DOI: 10.1016/j.sbi.2012.02.005]

Mead, D., Lucas, S., Copeland, A., Lapidus, A., Cheng, J.-F., Bruce, D.C., Goodwin, L.A., Pitluck, S., Chertkov, O., Zhang, X., et al. "Complete genome sequence of Paenibacillus strain Y4.12MC10, a novel Paenibacillus lautus strained isolated from Obsidian Hot Spring in Yellowstone National Park." Standards in Genomic Science 6, 366–385+ (2012). [DOI: 10.4056/sigs.2605792]

Meehan, T.D., Werling, B.P., Landis, D.A. & Gratton, C. "Pest-suppression potential of Midwestern landscapes under contrasting bioenergy scenarios." PLOS ONE 7,7, e41728+ (2012). [DOI: 10.1371/journal.pone.0041728.g001]

Miao, R., Hennessy, D.A. & Babcock, B.A. "Investment in cellulosic biofuel refineries: Do waivable biofuel mandates matter?" American Journal of Agricultural Economics 9,3, 750–762+ (2012). [DOI: 10.1093/ajae/aar142]

Miesel, J.R., Renz, M.J., Doll, J.E. & Jackson, R.D. "Effectiveness of weed management methods in establishment of switchgrass and a native species mixture for biofuels in Wisconsin." Biomass and Bioenergy 36, 121–131+ (2012). [DOI: 10.1016/j.biombioe.2011.10.018]

Mitchell, J.C., Rutkoski, T.J., Bannen, R.M. & Phillips, G.N., Jr. Combined computational and experimental approaches to sequence-based design of protein thermal stability Thermostable Proteins: Structural Stability and Design. 105–116+ (CRC Press, 2012).

Muttoni, G., Johnson, J.M., Santoro, N., Rhiner, C.J., von Mogel, K.J.H., Kaeppler, S.M. & de Leon, N. "A high-throughput core sampling device for the evaluation of maize stalk composition." Biotechnology for Biofuels 5,1, 27+ (2012). [DOI: 10.1186/1754-6834-5-27]

Nadakuduti, S.S., Pollard, M., Kosma, D.K., Allen, C., Ohlrogge, J.B. & Barry, C.S. "Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato." Plant Physiology 159,3, 945–960+ (2012). [DOI: 10.1104/pp.112.198374]

Nikièma, P., Rothstein, D.E. & Miller, R.O. "Initial greenhouse gas emissions and nitrogen leaching losses associated with converting pastureland to short-rotation woody bioenergy crops in northern Michigan, USA." Biomass and Bioenergy 39, 413–426+ (2012). [DOI: 10.1016/j.biombioe.2012.01.037]

O’Neill, B.J., Gurbuz, E.I. & Dumesic, J.A. "Reaction kinetics studies of the conversions of formic acid and butyl formate over carbon-supported palladium in the liquid phase." Journal of Catalysis 290, 193–201+ (2012). [DOI: 10.1016/j.jcat.2012.03.014,]

Pell, J., Hintze, A., Canino-Koning, R., Howe, A., Tiedje, J.M. & Brown, T. "Scaling metagenome sequence assembly with probabilistic de Bruijn graphs." Proceedings of the National Academy of Sciences of the United States of America 109,33, 13272–13277+ (2012). [DOI: 10.1073/pnas.1121464109]

Poskar, H., Huege, J., Krach, C., Franke, M., Shachar-Hill, Y. & Junker, B. "iMS2Flux - a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis." BMC Bioinformatics 13,1, 295+ (2012). [DOI: 10.1186/1471-2105-13-295]

Ralph, J., Akiyama, T., Coleman, D.C. & Mansfield, S.D. "Effects on lignin structure of coumarate 3-hydroxylase downregulation in Poplar." BioEnergy Research 5,4, 1009–1019+ (2012). [DOI: 10.1007/s12155-012-9218-y]

Reed, J.L. "Shrinking the metabolic solution space using experimental datasets." PLOS Computational Biology 8,8, e1002662+ (2012). [DOI: 10.1371/Journal.Pcbi.1002662]