Publications

Bandopadhyay, S., Li, X., Bowsher, A.W., Last, R.L. & Shade, A. "Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought." Nature Communications 15,1, 6347+ (2024). [DOI: 10.1038/s41467-024-50463-1]

Banerjee, R., Askenasy, I., Mettert, E.L. & Kiley, P.J. "Iron-sulfur Rrf2 transcription factors: an emerging versatile platform for sensing stress." Current Opinion in Microbiology 82, 102543+ (2024). [DOI: 10.1016/j.mib.2024.102543]

Barros, K.O., Mader, M., Krause, D.J., Pangilinan, J., Andreopoulos, B., Lipzen, A., Mondo, S.J., Grigoriev, I.V., Rosa, C.A., Sato, T.K., et al. "Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces." Biotechnology for Biofuels and Bioproducts 17,1, 20+ (2024). [DOI: 10.1186/s13068-024-02467-8]

Bhandari, D.D. & Brandizzi, F. "Logistics of defense: the contribution of endomembranes to plant innate immunity." Journal of Cell Biology 223,6, e202307066+ (2024). [DOI: 10.1083/jcb.202307066]

Bibik, J.D., Bryson, A.E. & Hamberger, B. "Compartmentalized terpenoid production in plants using Agrobacterium-mediated transient expression." in Synthetic Biology. Methods in Molecular Biology. (ed. Braman, J.) vols. 2760 21–34+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_2]

Bibik, J.D. & Hamberger, B. "Plant engineering to enable platforms for sustainable bioproduction of terpenoids." in Synthetic Biology. Methods in Molecular Biology. (ed. Braman, J.) vols. 2760 3–20+ (Humana, 2024). [DOI: 10.1007/978-1-0716-3658-9_1]

Bibik, J.D., Sahu, A., Kim, B., Unda, F., Andersen, T.B., Mansfield, S.D., Maravelias, C.T., Sharkey, T.D. & Hamberger, B.R. "Engineered poplar for bioproduction of the triterpene squalene." Plant Biotechnology Journal 22,8, 2301–2311+ (2024). [DOI: 10.1111/pbi.14345]

Bourmaud, C.L., Bertella, S., Rico, A.B., Karlen, S.D., Ralph, J. & Luterbacher, J. "Quantification of native lignin structural features with gel-phase 2D-HSQC0 reveals lignin structural changes during extraction." Angewandte Chemie International Edition 63,31, e202404442+ (2024). [DOI: 10.1002/anie.202404442]

Bujanovic, B.M., Hirth, K., Ralph, S., Reiner, R.S., Dongre, P., Mickles, C., Karlen, S.D., Baez, C. & Clemons, C. "Use of renewable alcohols in autocatalytic production of aspen organosolv lignins." ACS Omega 9,36, 38227–38247+ (2024). [DOI: 10.1021/acsomega.4c05981]

Chandrasekar, M., Collins, J.L., Habibi, S. & Ong, R.G. "Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass." Bioresource Technology 393, 129989+ (2024). [DOI: 10.1016/j.biortech.2023.129989]

Chavez, C.M., Groenewald, M., Hulfachor, A.B., Kpurubu, G., Huerta, R., Hittinger, C.T. & Rokas, A. "The cell morphological diversity of Saccharomycotina yeasts." FEMS Yeast Research 24, foad055+ (2024). [DOI: 10.1093/femsyr/foad055]

Chen, J., Lei, C., Chu, H., Li, X., Torn, M., Wang, Y.-P., Sciusco, P. & Robertson, P. "Overlooked cooling effects of albedo in terrestrial ecosystems." Environmental Research Letters 19,9, 093001+ (2024). [DOI: 10.1088/1748-9326/ad661d]

Chen, J., U, K.T.P., North, M. & Franklin, J.F. "The contributions of microclimatic information in advancing ecosystem science." Agricultural and Forest Meteorology 355, 110105+ (2024). [DOI: 10.1016/j.agrformet.2024.110105]

Chipkar, S., Kahmark, K., Bohm, S., Hussain, M.Z., Joshi, L., Krieg, K.M., Aguado, J., Cassidy, J., Lozano, P., Garland, K., et al. "High temperatures and low soil moisture synergistically reduce switchgrass yields from marginal field sites and inhibit fermentation." Global Change Biology – Bioenergy 16,2, e13119+ (2024). [DOI: 10.1111/gcbb.13119]

Conley, E., Wadler, C.S., Bell, B.A., Lucier, I., Haynie, C., Eldred, S., Nguyen, V., Bugni, T.S. & Thomas, M.G. "Directed evolution of an adenylation domain alters substrate specificity and generates a new catechol siderophore in Escherichia coli." Biochemistry 63,23, 3126–3135+ (2024). [DOI: 10.1021/acs.biochem.4c00499]

Crandall, J.G., Zhou, X., Rokas, A. & Hittinger, C.T. "Specialization restricts the evolutionary paths available to yeast sugar transporters." Molecular Biology and Evolution 41,11, msae228+ (2024). [DOI: 10.1093/molbev/msae228]

Crowther, T.W., Rappuoli, R., Corinaldesi, C., Danovaro, R., Donohue, T.J., Huisman, J., Stein, L.Y., Timmis, J.K., Timmis, K., Anderson, M.Z., et al. "Scientists’ call to action: microbes, planetary health, and the sustainable development goals." Cell 187,19, 5195–5216+ (2024). [DOI: 10.1016/j.cell.2024.07.051]

Cui, Y., Weeda, E.P., Omolabake, S., Karlen, S.D., Holland, C.M. & Stahl, S.S. "Oxidative catalytic fractionation of lignocellulosic biomass using a Co-N-P-C catalyst and one-step isolation of aromatic monomers via centrifugal partition chromatography." ACS Sustainable Chemistry & Engineering 12,26, 9795–9804+ (2024). [DOI: 10.1021/acssuschemeng.4c02120]

David, K.T., Harrison, M.-C., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Pennell, M., Hittinger, C.T., et al. "Saccharomycotina yeasts defy long-standing macroecological patterns." Proceedings of the National Academy of Sciences of the United States of America 121,10, e2316031121+ (2024). [DOI: 10.1073/pnas.2316031121]

Doron, L., Raval, D. & Kerfeld, C.A. "Towards using bacterial microcompartments as a platform for spatial metabolic engineering in the industrially important and metabolically versatile Zymomonas mobilis." Frontiers in Bioengineering and Biotechnology 12, 1344260+ (2024). [DOI: 10.3389/fbioe.2024.1344260]

Durant, C., Bhasin, A., Juenger, T.E. & Heckman, R.W. "Genetically correlated leaf tensile and morphological traits are driven by growing season length in a widespread perennial grass." American Journal of Botany 111,5, e16349+ (2024). [DOI: 10.1002/ajb2.16349]

Fu, J., McKinley, B., James, B., Chrisler, W., Markillie, L.M., Gaffrey, M.J., Mitchell, H.D., Riaz, M.R., Marcial, B., Orr, G., et al. "Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems." The Plant Journal 118,5, 1668–1688+ (2024). [DOI: 10.1111/tpj.16690]

Geissler, C.H., Ryu, J. & Maravelias, C.T. "The future of biofuels in the United States transportation sector." Renewable and Sustainable Energy Reviews 192, 114276+ (2024). [DOI: 10.1016/j.rser.2023.114276]

Goncalves, C., Harrison, M.-C., Steenwyk, J.L., Opulente, D.A., Labella, A.L., Wolters, J.F., Zhou, X., Shen, X.-X., Groenewald, M., Hittinger, C.T., et al. "Diverse signatures of convergent evolution in cactus-associated yeasts." PLOS Biology 22,9, e3002832+ (2024). [DOI: 10.1371/journal.pbio.3002832]

Goncalves, C., Hittinger, C.T. & Rokas, A. "Horizontal gene transfer in fungi and its ecological importance." in Fungal Associations. (ed. Blackwell, M.) vols. 9 59–81+ (Springer, 2024). [DOI: 10.1007/978-3-031-41648-4_3]