Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2013	Park, D.M., Akhtar, M.S., Ansari, A.Z., Landick, R. & Kiley, P.J. "The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally." PLOS Genetics 9,10, (2013). [DOI: 10.1371/journal.pgen.1003839] DOI Google Scholar	Conversion
2013	Park, J.-J., Lechno-Yossef, S., Wolk, C.P. & Vieille, C. "Cell-specific gene expression in Anabaena variabilis grown phototrophically, mixotrophically, and heterotrophically." BMC Genomics 14,1, 759+ (2013). [DOI: 10.1186/1471-2164-14-759] DOI Google Scholar	Conversion
2013	Peckham, S.D. & Gower, S.T. "Simulating the effects of harvest and biofuel production on the forest system carbon balance of the Midwest, USA." Global Change Biology – Bioenergy 5,4, 431-444+ (2013). [DOI: 10.1111/gcbb.12033] DOI Google Scholar	Sustainability
2013	Penton, R., Johnson, T.A., Quensen, J.F., Iwai, S., Cole, J.R. & Tiedje, J.M. "Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter." Frontiers in Microbiology 4, 279+ (2013). [DOI: 10.3389/fmicb.2013.00279] DOI Google Scholar	Sustainability
2013	Politz, M.C., Copeland, M.F. & Pfleger, B.F. "Artificial repressors for controlling gene expression in bacteria." Chemical Communications 49,39, 4325-4327+ (2013). [DOI: 10.1039/c2cc37107c] DOI Google Scholar	Conversion
2013	Rahimi, A., Azarpira, A., Kim, H., Ralph, J. & Stahl, S.S. "Chemoselective metal-free aerobic alcohol oxidation in lignin." Journal of the American Chemical Society 135,17, 6415-6418+ (2013). [DOI: 10.1021/ja401793n] DOI Google Scholar	Feedstocks, Conversion
2013	Rencoret, J., Ralph, J., Marques, G., Gutiérrez, A., Martínez, Á.T. & del Río, J.C. "Structural characterization of lignin isolated from coconut (Cocos nucifera) coir fibers." Journal of Agriculture and Food Chemistry 61,10, 2434-2445+ (2013). [DOI: 10.1021/jf304686x] DOI Google Scholar	Feedstocks
2013	Ridley, C.E., Jager, H.I., Clark, C.M., Efroymson, R.A., Kwit, C., Landis, D.A., Leggett, Z.H. & Miller, D.A. "Debate: Can bioenergy be produced in a sustainable manner that protects biodiversity and avoids the risk of invaders?" Bulletin of the Ecological Society of America 94,3, 277-290+ (2013). [DOI: 10.1890/0012-9623-94.3.277] DOI Google Scholar	Sustainability
2013	Robertson, B.A. & Doran, P.J. "Biofuels and biodiversity: the implications of energy sprawl." in Encyclopedia of Biodiversity. 528-539+ (Waltham, 2013). [DOI: 10.1016/B978-0-12-384719-5.00341-5] DOI Google Scholar	Sustainability
2013	Rothamer, D.A. & Donohue, T.J. "Chemistry and combustion of fit-for-purpose biofuels." Current Opinion in Chemical Biology 17,3, 522-528+ (2013). [DOI: 10.1016/j.cbpa.2013.03.039] DOI Google Scholar	Conversion, Sustainability
2013	Ruan, L. & Robertson, P. "Initial nitrous oxide, carbon dioxide, and methane costs of converting conservation reserve program grassland to row crops under no-till vs. conventional tillage." Global Change Biology 19,8, 2478-2489+ (2013). [DOI: 10.1111/gcb.12216] DOI Google Scholar	Sustainability
2013	Sanford, G.R. & Kucharik, C.J. "Effect of methodological consideration on soil carbon parameter estimates obtained via the acid hydrolysis-incubation method." Soil Biology and Biochemistry 67, 295-305+ (2013). [DOI: 10.1016/j.soilbio.2013.09.002] DOI Google Scholar	Sustainability
2013	Miller, R., Durrett, T.P., Kosma, D.K., Lydic, T.A., Muthan, B., Koo, A.J.K., Bukhman, Y.V., Reid, G.E., Howe, G.A., Ohlrogge, J., et al. "Altered lipid composition and enhanced nutritional value of Arabidopsis leaves following introduction of an algal diacylglycerol acyltransferase 2." The Plant Cell 25,2, 677-693+ (2013). [DOI: 10.1105/tpc.112.] DOI Google Scholar	Feedstocks
2013	Schwartz, C. & Amasino, R. "Nitrogen recycling and flowering time in perennial bioenergy crops." Frontiers in Plant Science 4, 76+ (2013). [DOI: 10.3389/fpls.2013.00076] DOI Google Scholar	Feedstocks
2013	Sekhon, R.S., Briskine, R., Hirsch, C.N., Myers, C.L., Springer, N.M., Buell, R., de Leon, N. & Kaeppler, S.M. "Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays." PLOS ONE 8, (2013). [DOI: 10.1371/journal.pone.0061005] DOI Google Scholar	Feedstocks
2013	Smith, S.L., Thelen, K.D. & MacDonald, S.J. "Yield and quality analyses of bioenergy crops grown on a regulatory brownfield." Biomass and Bioenergy 49, 123-130+ (2013). [DOI: 10.1016/j.biombioe.2012.12.017] DOI Google Scholar	Sustainability
2013	Takasuka, T.E., Book, A.J., Lewin, G.R., Currie, C.R. & Fox, B.G. "Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces." Scientific Reports 3, 1030+ (2013). [DOI: 10.1038/srep01030] DOI Google Scholar	Deconstruction
2013	Tjellstrom, H., Strawsine, M., Silva, J., Cahoon, E.B. & Ohlrogge, J.B. "Disruption of plastid acyl:acyl carrier protein synthetases increases medium chain fatty acid accumulation in seeds of transgenic Arabidopsis." FEBS Letters 587,7, 936-42+ (2013). [DOI: 10.1016/j.febslet.2013.02.021] DOI Google Scholar	Feedstocks
2013	Tobimatsu, Y., Chen, F., Nakashima, J., Escamilla-Treviño, L.L., Jackson, L., Dixion, R.A. & Ralph, J. "Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl lignins in plant seeds." The Plant Cell 25,7, 2587-2600+ (2013). [DOI: 10.1105/tpc.113.113142] DOI Google Scholar	Feedstocks
2013	Tobimatsu, Y., Wagner, A., Donaldson, L., Mitra, P., Niculeas, C., Dima, O., Kim, J.I., Anderson, N., Loque, D., Boerjan, W., et al. "Visualization of plant cell wall lignification using fluorescence-tagged monolignols." The Plant Journal 76,3, 357-366+ (2013). [DOI: 10.1111/tpj.12299] DOI Google Scholar	Feedstocks
2013	Troncoso-Ponce, M.A., Cao, X., Yang, Z. & Ohlrogge, J.B. "Lipid turnover during senescence." Plant Science 205-206, 13-19+ (2013). [DOI: 10.1016/j.plantsci.2013.01.004] DOI Google Scholar	Feedstocks
2013	Vanholme, B., Cesarino, I., Geert, G., Kim, H., Marroni, F., Van Acker, R., Vanholme, R., Morreel, K., Ivens, B., Pinosio, S., et al. "Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study." New Phytologist 198,3, 765-776+ (2013). [DOI: 10.1111/nph.12179] DOI Google Scholar	Feedstocks
2013	Vanholme, R., Cesarino, I., Rataj, K., Xiao, Y., Sundin, L., Goeminne, G., Kim, H., Cross, J., Morreel, K., Araujo, P., et al. "Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis." Science 341, 1103-1106+ (2013). [DOI: 10.1126/science.1241602] DOI Google Scholar	Feedstocks
2013	Vismeh, R., Humpula, J.F., Chundawat, S.P.S., Balan, V., Dale, B.E. & Jones, D. "Profiling of soluble neutral oligosaccharides from treated biomass using solid phase extraction and LC-TOF MS." Carbohydrate Polymers 94,2, 791-799+ (2013). [DOI: 10.1016/j.carbpol.2013.02.005] DOI Google Scholar	Deconstruction
2013	Vismeh, R., Lu, F., Chundawat, S.P.S., Humpula, J.F., Azarpira, A., Balan, V., Dale, B.E., Ralph, J. & Jones, D. "Profiling of diferulates (plant cell wall cross-linkers) using ultrahigh-performance liquid chromatography-tandem mass spectrometry." Analyst 138,21, 6683-6692+ (2013). [DOI: 10.1039/C3AN36709F] DOI Google Scholar	Feedstocks, Deconstruction