Publications

Broadbent, J.R., Neeno-Eckwall, E.C., Stahl, B., Tandee, K., Cai, H., Morovic, W., Horvath, P., Heidenreich, J., Perna, N.T., Barrangou, R., et al. "Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation." BMC Genomics 13,1, 533+ (2012). [DOI: 10.1186/1471-2164-13-533]

Casler, M.D. "Switchgrass breeding, genetics, and genomics." in Switchgrass. 29–52+ (Springer-Verlag, 2012). [DOI: 10.1007/978-1-4471-2903-5]

Chapman, K.D. & Ohlrogge, J.B. "Compartmentation of triacylglycerol accumulation in plants." Journal of Biological Chemistry 287,4, 2288–2294+ (2012). [DOI: 10.1074/jbc.R111.290072]

Chen, F., Tobimatsu, Y., Havkin-Frenkel, D., Dixon, R.A. & Ralph, J. "A polymer of caffeyl alcohol in plant seeds." Proceedings of the National Academy of Sciences of the United States of America 109,5, 1772–1777+ (2012). [DOI: 10.1073/pnas.1120992109]

Chen, X. & Shachar-Hill, Y. "Insights into metabolic efficiency from flux analysis." Journal of Experimental Botany 63,6, 2343–51+ (2012). [DOI: 10.1093/jxb/ers057]

Chia, J.-M., Song, C., Bradbury, P.J., Costich, D., de Leon, N., Doebley, J., Elshire, R.J., Gaut, B., Geller, L., Glaubitz, J.C., et al. "Maize HapMap2 identifies extant variation from a genome in flux." Nature Genetics 44,7, 803–807+ (2012). [DOI: 10.1038/ng.2313]

Chundawat, S.P.S., Chang, L., Gunawan, C., Balan, V., McMahan, C. & Dale, B.E. "Guayule as a feedstock for lignocellulosic biorefineries using ammonia fiber expansion (AFEX) pretreatment." Industrial Crops and Products 37,1, 486–492+ (2012). [DOI: 10.1016/j.indcrop.2011.07.025]

Currie, C.R. "The tangled banks of ants and microbes." in Microbes and Evolution: The World That Darwin Never Saw. 181–190+ (ASM Press, 2012).

Dale, B.E. & Ong, R.G. "Energy, wealth, and human development: why and how biomass pretreatment research must improve." Biotechnology Progress 28,4, 893–8+ (2012). [DOI: 10.1002/btpr.1575]

del Río, J.C., Prinsen, P., Rencoret, J., Nieto, L., Jiménez-Barbero, J., Ralph, J., Martínez, Á.T. & Gutiérrez, A. "Structural characterization of the lignin in the cortex and pith of elephant grass (Pennisetum purpureum) stems." Journal of Agricultural and Food Chemistry 60,14, 3619–3634+ (2012). [DOI: 10.1021/jf300099g]

del Rio, J.C., Rencoret, J., Prinsen, P., Martínez, Á.T., Ralph, J. & Gutiérrez, A. "Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods." Journal of Agricultural and Food Chemistry 60, 5922–5935+ (2012). [DOI: 10.1021/jf301002n]

Dufour, Y.S. & Donohue, T.J. "Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks." in Advances in Microbial Physiology. vols. 61 1–36+ (2012). [DOI: 10.1016/B978-0-12-394423-8.00001-9]

Egbendewe-Mondzozo, A., Swinton, S.M., Izaurralde, C., Manowitz, D.H. & Zhang, X. "Maintaining environmental quality while expanding energy biomass production: policy simulations from Michigan, USA." in International Association of Agricultural Economists (IAAE) Triennial Conference. (2012).

Ellinger, J.J., Miller, D.C., Lewis, I.A. & Markley, J.L. "Semiautomated device for batch extraction of metabolites from tissue samples." Analytical Chemistry 84,4, 1809–12+ (2012). [DOI: 10.1021/ac203390v]

Elumalai, S., Tobimatsu, Y., Grabber, J.H., Pan, X. & Ralph, J. "Epigallocatechin gallate incorporation into lignin enhances the alkaline delignification and enzymatic saccharification of cell walls." Biotechnology for Biofuels 5, 59+ (2012). [DOI: 10.1186/1754-6834-5-59]

Eudes, A., George, A., Mukerjee, P., Kim, J.S., Pollet, B., Benke, P.I., Yang, F., Mitra, P., Sun, L., Cetinkol, O.P., et al. "Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification." Plant Biotechnology Journal 10,5, 609–620+ (2012). [DOI: 10.1111/j.1467-7652.2012.00692.x]

Gardner, J.G. & Keating, D.H. "Genetic and functional genomic approaches for the study of plant cell wall degredation in Celvibrio japonicus." in Methods in Enzymology. vols. 510 331–347+ (2012). [DOI: 10.1016/B978-0-12-415931-0.00018-5]

Garlock, R.J., Balan, V. & Dale, B.E. "Optimization of AFEX™ pretreatment conditions and enzyme mixtures to maximize sugar release from upland and lowland switchgrass." Bioresoure Technology 104, 757–68+ (2012). [DOI: 10.1016/j.biortech.2011.11.034]

Garlock, R.J., Bals, B., Jasrotia, P., Balan, V. & Dale, B.E. "Influence of variable species composition on the saccharification of AFEX™ pretreated biomass from unmanaged fields in comparison to corn stover." Biomass and Bioenergy 37, 49–59+ (2012). [DOI: 10.1016/j.biombioe.2011.12.036]

Garlock, R.J., Wong, Y.S., Balan, V. & Dale, B.E. "AFEX pretreatment and enzymatic conversion of black locust (Robinia pseudoacacia L.) to soluble sugars." BioEnergy Research 5,2, 306–318+ (2012). [DOI: 10.1007/s12155-011-9134-6]

Gärtner, K., Lechno-Yossef, S., Cornish, A.J., Wolk, P. & Hegg, E.L. "Expression of Shewanella oneidensis MR-1 [FeFe]-hydrogenase genes in Anabaena sp. strain PCC 7120." Applied and Environmental Microbiology 78,24, 8579–8586+ (2012). [DOI: 10.1128/​AEM.01959-12]

Grieshop, M.J., Werling, B.P., Buehrer, K., Perrone, J., Isaacs, R. & Landis, D.A. "Big brother is watching: studying insect predation in the age of digital surveillance." American Entomologist 58,3, 172–182+ (2012). [DOI: 10.1093/ae/58.3.172]

Gunckel, K., Mohan, L., Covitt, B.A. & Anderson, C.W. "Addressing challenges in developing learning progressions for environmental science literacy." in Learning progressions in science: Current challenges and future directions. 39–75+ (Sense Publishers, 2012). [DOI: 10.1007/978-94-6091-824-7_4]

Gürbüz, E.I., Wettstein, S.G. & Dumesic, J.A. "Conversion of hemicellulose to furfural and levulinic acid using biphasic reactors with alkylphenol solvents." ChemSusChem 5,2, 383–387+ (2012). [DOI: 10.1002/cssc.201100608]

Haft, R., Gardner, J. & Keating, D. "Quantitative colorimetric measurement of cellulose degradation under microbial culture conditions." Applied Microbiology and Biotechnology 94,1, 223–9+ (2012). [DOI: 10.1007/s00253-012-3968-5]