Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2013	Wang, Y., Mortimer, J.C., Davis, J., Dupree, P. & Keegstra, K. "Identification of an additional protein involved in mannan biosynthesis." The Plant Journal 73,1, 105-117+ (2013). [DOI: 10.1111/tpj.12019] DOI Google Scholar	Feedstocks
2013	Yelle, D.J., Kaparaju, P., Hunt, C.G., Hirth, K., Kim, H., Ralph, J. & Felby, C. "Two-dimensional NMR evidence for cleavage of lignin and xylan substituents in wheat straw through hydrothermal pretreatment and enzymatic hydrolysis." BioEnergy Research 6,1, 211-221+ (2013). [DOI: 10.1007/s12155-012-9247-6] DOI Google Scholar	Feedstocks, Deconstruction
2013	Adams, A.S., Aylward, F.O., Adams, S.M., Erbilgin, N., Aukema, B., Currie, C.R., Suen, G. & Raffa, K.F. "Mountain pine beetles colonizing historical and naïve host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism." Applied and Environmental Microbiology 79,11, 3468-3475+ (2013). [DOI: 10.1128/AEM.00068-13] DOI Google Scholar	Deconstruction
2013	Agnew, D.E. & Pfleger, B.F. "Synthetic biology strategies for synthesizing polyhydroxyalkanoates from unrelated carbon sources." Chemical Engineering Science 103, 58-67+ (2013). [DOI: 10.1016/j.ces.2012.12.023] DOI Google Scholar	Conversion
2013	Alonso, D.M., Wettstein, S.G. & Dumesic, J.A. "Gamma-valerolactone, a sustainable platform molecule derived from lignocellulosic biomass." Green Chemistry 15,3, 584+ (2013). [DOI: 10.1039/c3gc37065h] DOI Google Scholar	Conversion
2013	Asbjornsen, H., Hernandez-Santana, V., Liebman, M., Bayala, J., Chen, J., Helmers, M., Ong, C.K. & Schulte, L.A. "Targeting perennial vegetation in agricultural landscapes for enhancing ecosystem services." Renewable Agriculture and Food Systems 29,2, 101-125+ (2013). [DOI: 10.1017/S1742170512000385] DOI Google Scholar	Sustainability
2013	Aylward, F.O., Burnum, K.E., Tringe, S.G., Teiling, C., Tremmel, D.M., Moeller, J., Scott, J.J., Barry, K.W., Nicora, C.D., Piehowski, P.D., et al. "Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens." Applied and Environmental Microbiology 79,12, 3770-3778+ (2013). [DOI: 10.1128/AEM.03833-12] DOI Google Scholar	Deconstruction
2013	Aylward, F.O., McDonald, B.R., Adams, S.M., Valenzuela, A., Schmidt, R.A., Goodwin, L.A., Woyke, T., Currie, C.R., Suen, G. & Poulsen, M. "Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities." Applied and Environmental Microbiology 79,12, 3724-3733+ (2013). [DOI: 10.1128/AEM.00518-13] DOI Google Scholar	Deconstruction
2013	Aylward, F.O., Tremmel, D.M., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., Huntemann, M., et al. "Complete genome of Enterobacteriaceae bacterium strain FGI 57, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,1, (2013). [DOI: 10.1128/genomeA.00238-12] DOI Google Scholar	Deconstruction
2013	Aylward, F.O., Tremmel, D.M., Starrett, G.J., Bruce, D.C., Chain, P., Chen, A., Davenport, K.W., Detter, C., Han, C.S., Han, J., et al. "Complete genome of Serratia sp. strain FGI 94, a strain associated with leaf-cutter ant fungus gardens." Genome Announcements 1,2, (2013). [DOI: 10.1128/genomeA.00239-12] DOI Google Scholar	Deconstruction
2013	Balan, V., Chiaramonti, D. & Kumar, S. "Review of US and EU initiatives towards development, demonstration and commercialization of lignocellulosic biofuels." Biofuels, Bioproducts and Biorefining 7,6, 732-759+ (2013). [DOI: 10.1002/bbb.1436] DOI Google Scholar	Deconstruction
2013	Balan, V., Jin, M., Culbertson, A. & Uppugundla, N. "The saccharification step: Trichoderma reesei cellulase hyper producer strains." in Lignocellulose Conversion: Enzymatic and Microbial Tools for Bioethanol Production. 65-92+ (Springer, 2013). [DOI: 10.1007/978-3-642-37861-4] DOI Google Scholar	Deconstruction
2013	Bals, B.D., Gunawan, C., Moore, J., Teymouri, F. & Dale, B.E. "Enzymatic hydrolysis of pelletized AFEX™-treated corn stover at high solid loadings." Biotechnology and Bioengineering 111,2, 264-271+ (2013). [DOI: 10.1002/bit.25022/abstract] DOI Google Scholar	Deconstruction
2013	Bandaru, V., Izaurralde, C., Manowitz, D., Link, R., Zhang, X. & Post, W.M. "Soil carbon change and net energy associated with biofuel production on marginal lands: a regional modeling perspective." Journal of Environmental Quality 42,6, 1802-1814+ (2013). [DOI: 10.2134/jeq2013.05.0171] DOI Google Scholar	Sustainability
2013	Bates, P.D., Stymne, S. & Ohlrogge, J. "Biochemical pathways in seed oil synthesis." Current Opinion in Plant Biology 16, 1-7+ (2013). [DOI: 10.1016/j.pbi.2013.02.015] DOI Google Scholar	Feedstocks
2013	Beissinger, T.M., Hirsch, C.N., Sekhon, R.S., Foerster, J.M., Johnson, J.M., Muttoni, G., Vaillancourt, B., Buell, R., Kaeppler, S.M. & de Leon, N. "Marker density and read-depth for genotyping populations using genotyping-by-sequencing." Genetics 193,4, 1073-1081+ (2013). [DOI: 10.1534/genetics.112.147710] DOI Google Scholar	Feedstocks
2013	Bianchetti, C.M., Brumm, P., Smith, R.W., Dyer, K., Hura, G.L., Rutkoski, T.J. & Phillips, G.N. "Structure, dynamics, and specificity of endoglucanase D from Clostridium cellulovorans." Journal of Molecular Biology 425,22, 4267-4285+ (2013). [DOI: 10.1016/j.jmb.2013.05.030] DOI Google Scholar	Deconstruction
2013	Bianchetti, C.M., Harmann, C.H., Takasuka, T.E., Hura, G.L., Dyer, K. & Fox, B.G. "Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E." Journal of Biological Chemistry 288,25, 18574-18587+ (2013). [DOI: 10.1074/jbc.M113.475848] DOI Google Scholar	Deconstruction
2013	Brumm, P.J. "Bacterial genomes: what they teach us about cellulose degradation." Biofuels 4,6, 669-681+ (2013). [DOI: 10.4155/bfs.13.44] DOI Google Scholar	Deconstruction
2013	Caes, B.R., Van Oosbree, T.R., Lu, F., Ralph, J., Maravelias, C.T. & Raines, R.T. "Simulated moving bed chromatography: separation and recovery of sugars and ionic liquid from biomass hydrolysates." ChemSusChem 6, 2083-2089+ (2013). [DOI: 10.1093/bioinformatics/btt357] DOI Google Scholar	Feedstocks, Deconstruction, Conversion
2013	Chandrasekaran, A., Deng, K., Koh, C.-Y., Takasuka, T.E., Bergeman, L.F., Fox, B.G., Adams, P.D. & Singh, A.K. "A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres." Chemical Communications 49, 5441-5443+ (2013). [DOI: 10.1039/C3CC39155H] DOI Google Scholar	Deconstruction
2013	Chen, X., Alonso, A.P. & Shachar-Hill, Y. "Dynamic metabolic flux analysis of plant cell wall synthesis." Metabolic Engineering 18, 78-85+ (2013). [DOI: 10.1016/j.ymben.2013.04.006] DOI Google Scholar	Feedstocks
2013	Christopherson, M.R. & Suen, G. "Nature's bioreactor: the rumen as a model for biofuel production." Biofuels 4,5, 511-521+ (2013). [DOI: 10.4155/bfs.13.36] DOI Google Scholar	Deconstruction
2013	Christopherson, M.R., Suen, G., Bramhacharya, S., Jewell, K.A., Aylward, F.O., Mead, D. & Brumm, P.J. "The genome sequences of Cellulomonas fimi and “Cellvibrio gilvus” reveal the cellulolytic strategies of two facultative anaerobes, transfer of “Cellvibrio gilvus” to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov." PLOS ONE 8,1, (2013). [DOI: 10.1371/journal.pone.0053954] DOI Google Scholar	Deconstruction
2013	Chundawat, S.P.S., Bals, B., Campbell, T., Sousa, L., Gao, D., Jin, M., Eranki, P.L., Garlock, R., Teymouri, F., Balen, V., et al. "Primer on ammonia fiber expansion pretreatment." in Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals. 173-204+ (John Wiley & Sons, Ltd., 2013). [DOI: 10.1002/9780470975831.ch9] DOI Google Scholar	Deconstruction