Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2014	Riley, R.W., Salamova, A.A., Brown, D.W., Nagy, L.G., Floudas, D., Held, B.W., Levasseur, A., Lombard, V., Morin, E., Otillar, R., et al. "Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white rot/brown rot paradigm for wood decay fungi." Proceedings of the National Academy of Sciences of the United States of America 111,27, 9923-9928+ (2014). [DOI: 10.1073/pnas.1400592111] DOI Google Scholar	Deconstruction
2014	Robertson, P. "Soil greenhouse gas emissions and their mitigation." in The Encyclopedia of Agriculture and Food Systems. 185-196+ (Academic Press, 2014). [DOI: 10.1016/B978-0-444-52512-3.00097-8] DOI Google Scholar	Sustainability
2014	Robertson, P., Grace, P.R., Izaurralde, C., Parton, W.P. & Zhang, X. "Correspondence: CO2 emissions from crop residue-derived biofuels." Nature Climate Change 4,11, 933-934+ (2014). [DOI: 10.1038/nclimate2402] DOI Google Scholar	Sustainability
2014	Sahajpal, R., Zhang, X., Izaurralde, R.C., Gelfand, I. & Hurtt, G.C. "Identifying representative crop rotation patterns and grassland loss in the US Western Corn Belt." Computers and Electronics in Agriculture 108, 173-182+ (2014). [DOI: 10.1016/j.compag.2014.08.005] DOI Google Scholar	Sustainability
2014	Sarks, C., Jin, M., Sato, T.K., Balen, V. & Dale, B.E. "Studying the rapid bioconversion of lignocellulosic sugars into ethanol using high cell density fermentations with cell recycle." Biotechnology for Biofuels 7, 73+ (2014). [DOI: 10.1186/1754-6834-7-73] DOI Google Scholar	Deconstruction, Conversion
2014	Sato, T.K., Liu, T., Parreiras, L.S., Williams, D.L., Wohlbach, D.J., Bice, B.D., Ong, I.S., Breuer, R.J., Qin, L., Busalacchi, D., et al. "Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass." Applied and Environmental Microbiology 80,2, 540-554+ (2014). [DOI: 10.1128/AEM.01885-13] DOI Google Scholar	Deconstruction, Conversion
2014	Schuetz, M., Benske, A., Smith, R.A., Watanabe, Y., Tobimatsu, Y., Ralph, J., Demura, T., Ellis, B. & Samuels, L. "Laccases direct lignification in the discrete secondary cell wall domains of protoxylem." Plant Physiology 166,2, 798-807+ (2014). [DOI: 10.1104/pp.114.245597] DOI Google Scholar	Feedstocks
2014	Sekhon, R.S., Hirsch, C.N., Childs, K.L., Breitzman, M.W., Kell, P., Duvick, S., Spalding, E.P., Buell, R., de Leon, N. & Kaeppler, S. "Phenotypic and transcriptional analysis of divergently selected maize populations reveals the role of developmental timing in seed size determination." Plant Physiology 165, 658-669+ (2014). [DOI: 10.1104/pp.114.235424] DOI Google Scholar	Feedstocks
2014	Shcherbak, I., Millar, N. & Robertson, P. "Global metaanalysis of the nonlinear response of soil nitrous oxide (N2O) emissions to fertilizer nitrogen." Proceedings of the National Academy of Sciences of the United States of America 111,25, 9199-9204+ (2014). [DOI: 10.1073/pnas.1322434111] DOI Google Scholar	Sustainability
2014	Shcherbak, I. & Robertson, P. "Determining the diffusivity of nitrous oxide in soil using in situ tracers." Soil Science Society of America Journal 78,1, 79-88+ (2014). [DOI: 10.2136/sssaj2013.05.0181] DOI Google Scholar	Sustainability
2014	Skevas, T., Swinton, S.M., Meehan, T.D., Kim, T.N., Gratton, C. & Egbendewe-Mondzozo, A. "Integrating agricultural pest biocontrol into forecasts of energy biomass production." Ecological Economics 106, 195-203+ (2014). [DOI: 10.1016/j.ecolecon.2014.07.027] DOI Google Scholar	Sustainability
2014	Sundin, L., Vanholme, R., Geerinck, J., Goeminne, G., Hofer, R., Kim, H., Ralph, J. & Boerjan, W. "Mutation of the inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 alters lignin composition and improves saccharification." Plant Physiology 166,4, 1956-1971+ (2014). [DOI: 10.1104/pp.114.245548] DOI Google Scholar	Feedstocks
2014	Syswerda, S.P. & Robertson, G.P. "Ecosystem services along a management gradient in Michigan (USA) cropping systems." Agriculture, Ecosystems & Environment 189, 28-35+ (2014). [DOI: 10.1016/j.agee.2014.03.006] DOI Google Scholar	Sustainability
2014	Takasuka, T.E., Acheson, J.F., Bianchetti, C.M., Prom, B.M., Bergeman, L.F., Book, A.J., Currie, C.R. & Fox, B.G. "Biochemical properties and atomic resolution structure of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E." PLOS ONE 9,4, (2014). [DOI: 10.1371/journal.pone.0094166] DOI Google Scholar	Deconstruction
2014	Takasuka, T.E., Bianchetti, C.M., Tobimatsu, Y., Bergeman, L.F., Ralph, J. & Fox, B.G. "Structure-guided analysis of catalytic specificity of the abundantly secreted chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E." Proteins 82,7, 1245-1257+ (2014). [DOI: 10.1002/prot.24491] DOI Google Scholar	Feedstocks, Deconstruction
2014	Takasuka, T.E., Walker, J.A., Bergeman, L.F., Meulen, K.A.V., Makino, S.-ichi, Elsen, N.L. & Fox, B.G. "Cell-free translation of biofuels enzymes." in Cell-Free Protein Synthesis: Methods and Protocols. vol. 118 71-95+ (The Humana Press Inc., 2014). [DOI: 10.1007/978-1-62703-782-2_5] DOI Google Scholar	Deconstruction
2014	Tobimatsu, Y., Van de Wouwer, D., Allen, E., Kumpf, R., Vanholme, B., Boerjan, W. & Ralph, J. "A click chemistry strategy for visualization of plant cell wall lignification." Chemical Communications 50,82, 12262-12265+ (2014). [DOI: 10.1039/c4cc04692g] DOI Google Scholar	Feedstocks
2014	Truong, S.K., McCormick, R.F., Morishige, D.T. & Mullet, J.E. "Resolution of genetic map expansion caused by excess heterozygosity in plant recombinant inbred populations." G3: Genes \| Genomes \| Genetics 4,10, 1963-1969+ (2014). [DOI: 10.1534/g3.114.012468] DOI Google Scholar	Feedstocks
2014	Ulbrich, A., Bailey, D.J., Westphall, M.S. & Coon, J.J. "Organic acid quantitation by NeuCode methylamidation." Analytical Chemistry 86,9, 4402-4408+ (2014). [DOI: 10.1021/ac500270q] DOI Google Scholar	Conversion
2014	Uppugundla, N., Sousa, L., Chundawat, S.P.S., Yu, X., Simmons, B., Singh, S., Gao, X., Kumar, R., Wyman, C.E., Dale, B.E., et al. "A comparative study of ethanol production using dilute acid, ionic liquid and AFEX™ pretreated corn stover." Biotechnology for Biofuels 7, 72+ (2014). [DOI: 10.1186/1754-6834-7-72] DOI Google Scholar	Deconstruction
2014	Van Acker, R., Leple, J.-C., Aerts, D., Storme, V., Goeminne, G., Ivens, B., Legee, F., Lapierre, C., Piens, K., Van Montagu, M.C.E., et al. "Improved saccharification and ethanol yield from field-grown transgenic poplar deficient in cinnamoyl-CoA reductase." Proceedings of the National Academy of Sciences of the United States of America 111,2, 845-850+ (2014). [DOI: 10.1073/pnas.1321673111] DOI Google Scholar	Feedstocks
2014	Vanholme, B., Vanholme, R., Turumtay, H., Goeminne, G., Cesarino, I., Goubet, F., Morreel, K., Rencoret, J., Bulone, V., Hooijmaijers, C., et al. "Accumulation of N-acetylglucosamine oligomers in the plant cell wall affects plant architecture in a dose-dependent and conditional manner." Plant Physiology 165, 290-308+ (2014). [DOI: 10.1104/pp.113.233742] DOI Google Scholar	Feedstocks
2014	Vinay-Lara, E., Hamilton, J.J., Stahl, B., Broadbent, J.R., Reed, J.L. & Steele, J.L. "Genome-scale reconstruction of metabolic networks of Lactobacillus casei ATCC 334 and 12A." PLOS ONE 9,11, (2014). [DOI: 10.1371/journal.pone.0110785] DOI Google Scholar	Conversion
2014	Werling, B.P., Dickson, T.L., Isaacs, R., Gaines, H., Gratton, C., Gross, K.L., Liere, H., Malmstrom, C.M., Meehan, T.D., Ruan, L., et al. "Perennial grasslands enhance biodiversity and multiple ecosystem services in bioenergy landscapes." Proceedings of the National Academy of Sciences of the United States of America 111,4, 1652-1657+ (2014). [DOI: 10.1073/pnas.1309492111] DOI Google Scholar	Sustainability
2014	Wieder, W.R., Grandy, A.S., Kallenbach, C.M. & Bonan, G.B. "Integrating microbial physiology and physio-chemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model." Biogeosciences 11, 3899-3917+ (2014). [DOI: 10.5194/bgd-11-1147-2014 final: doi:10.5194/bg-11-3899-2014] DOI Google Scholar	Sustainability