Publications

Green, A.R., Lewis, K.M., Barr, J.T., Jones, J.P., Lu, F., Ralph, J., Vermerris, W., Sattler, S.E. & Kang, C. "Determination of the structure and catalytic mechanism of Sorghum bicolor caffeic acid O-methyltransferase and the structural impact of three brown midrib12 mutations." Plant Physiology 165, 1440–1456+ (2014). [DOI: 10.1104/pp.114.241729]

Greenler, J., Nye, L. & Tangen, T. "Cellulose breakdown." The Science Teacher 81, 3–11+ (2014).

Haft, R.J., Keating, D.H., Schwaegler, T., Schwalbach, M.S., Vinokur, J., Tremaine, M., Peters, J.M., Kotlajich, M.V., Pohlmann, E.L., Ong, I.M., et al. "Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria." Proceedings of the National Academy of Sciences of the United States of America 111,25, E2576-E2585+ (2014). [DOI: 10.1073/pnas.1401853111]

Haitjema, C.H., Boock, J.T., Natarajan, A., Dominguez, M.A., Gardner, J.G., Keating, D.H., Withers, S.T. & Delisa, M.P. "Universal genetic assay for engineering extracellular protein expression." ACS Synthetic Biology 3,2, 74–82+ (2014). [DOI: 10.1021/sb400142b]

Han, J., Sen, M., Alonso, D.M., Dumesic, J.A. & Maravelias, C.T. "A strategy for the simultaneous catalytic conversion of hemicellulose and cellulose from lignocellulosic biomass to liquid transportation fuels." Green Chemistry 16,2, 653–661+ (2014). [DOI: 10.1039/C3GC41511B]

He, J., Pingali, S.V., Chundawat, S.P., Pack, A., Jones, D., Langan, P., Davison, B.H., Urban, V., Evans, B. & O’Neill, H. "Controlled incorporation of deuterium into bacterial cellulose." Cellulose 21,2, 927–936+ (2014). [DOI: 10.1007/s10570-013-0067-4]

Hedtcke, J.L., Sanford, G.R., Hadley, K.E. & Thelen, K.D. "Maximizing land use during switchgrass establishment in the North Central United States." Agronomy Journal 106,2, 596–604+ (2014). [DOI: 10.2134/agronj2013.0410]

Held, M.A., Danhof, L. & Brandizzi, F. "Identifying protein-protein interactions in Arabidopsis by co-immunoprecipitation of GFP-tagged proteins and proteomic detection." in Fluorescent Proteins. (Humana Press, 2014).

Herzberger, A.J., Duncan, D.S. & Jackson, R.D. "Bouncing back: plant-associated soil microbes respond rapidly to prairie establishment." PLOS ONE 9,12, e115775+ (2014). [DOI: 10.1371/journal.pone.0115775]

Hirsch, C.D., Evans, J., Buell, R. & Hirsch, C.N. "Reduced representation approaches to interrogate genome diversity in large, repetitive plant genomes." Briefings in Functional Genomics 13,4, 257–267+ (2014). [DOI: 10.1093/bfgp/elt051]

Hirsch, C.N., Foerster, J.M., Johnson, J.M., Sekhon, R.S., Muttoni, G., Vaillancourt, B., Peñagaricano, F., Lindquist, E., Pedraza, M.A., Barry, K., et al. "Insights into the maize pan-genome and pan-transcriptome." The Plant Cell 26,1, 121–135+ (2014). [DOI: 10.1105/tpc.113.119982]

Howe, A.C., Jansson, J.K., Malfatti, S.A., Tringe, S.G., Tiedje, J.M. & Brown, T. "Tackling soil diversity with the assembly of large, complex metagenomes." Proceedings of the National Academy of Sciences of the United States of America 111,13, 4904–4909+ (2014). [DOI: 10.1073/pnas.1402564111]

Huang, E.L., Aylward, F.O., Kim, Y.-M., Webb-Robertson, B.-J.M., Nicora, C.D., Hu, Z., Metz, T.O., Lipton, M.S., Smith, R.D., Currie, C.R., et al. "The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation." Environmental Microbiology Reports 6,4, 389–395+ (2014). [DOI: 10.1111/1758-2229.12163]

Humpula, J.F., Uppugundla, N., Vismeh, R., Sousa, L., Chundawat, S.P.S., Jones, D., Balan, V., Dale, B.E. & Cheh, A.M. "Probing the nature of AFEX-pretreated corn stover derived decomposition products that inhibit cellulase activity." Bioresource Technology 152, 38–45+ (2014). [DOI: 10.1016/j.biortech.2013.10.082]

Imam, S., Fitzgerald, C.M., Cook, E.M., Donohue, T.J. & Noguera, D.R. "Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides." Photosynthesis Research 123, 167–182+ (2014). [DOI: 10.1007/s11120-014-0061-1]

Imam, S., Noguera, D.R. & Donohue, T.J. "Global analysis of photosynthesis transcriptional regulatory networks." PLOS Genetics 10,12, e1004837+ (2014). [DOI: 10.1371/journal.pgen.1004837]

Jabbour, D., Angelos, E.R., Mukhopadhyay, A., Womboldt, A., Borrusch, M.S. & Walton, J.D. "Factors contributing to recalcitrance of herbaceous dicotyledons (forbs) to enzymatic deconstruction." Biotechnology for Biofuels 7,1, 52+ (2014). [DOI: 10.1186/1754-6834-7-52]

Jensen, J.K., Johnson, N.R. & Wilkerson, C.G. "Arabidopsis thaliana IRX10 and two related proteins from psyllium and Physcomitrella patens are xylan xylosyltransferases." The Plant Journal 80,2, 207–215+ (2014). [DOI: 10.1111/tpj.12641]

Karkehabadi, S., Helmich, K.E., Kaper, T., Hansson, H., Mikkelsen, N.E., Gudmundsson, M., Piens, K., Fujdala, M., Banerjee, G., Scott-Craig, J.S., et al. "Biochemical characterization and crystal structures of a fungal family 3 β-glucosidase, Cel3A from Hypocrea jecorina." Journal of Biological Chemistry 289, 31624–31637+ (2014). [DOI: 10.1074/jbc.M114.587766]

Keating, D.H., Zhang, Y., Ong, I.M., McIlwain, S., Morales, E.H., Grass, J.A., Tremaine, M., Bothfeld, W., Higbee, A., Ulbrich, A., et al. "Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification." Frontiers in Microbiology 5, 402+ (2014). [DOI: 10.3389/fmicb.2014.00402]

Kelkar, S., Li, Z., Bovee, J., Thelen, K.D., Kriegel, R.M. & Saffron, C.M. "Pyrolysis of North-American grass species: effect of feedstock composition and taxonomy on pyrolysis products." Biomass and Bioenergy 64, 152–161+ (2014). [DOI: 10.1016/j.biombioe.2014.03.032]

Kells, B.J. & Swinton, S.M. "Profitability of cellulosic biomass production in the northern Great Lakes region." Agronomy Journal 106,2, 397–406+ (2014). [DOI: 10.2134/agronj2013.0397]

Kim, H. & Ralph, J. "A gel-state 2D-NMR method for plant cell wall profiling and analysis: model study with the amorphous cellulose and xylan from ball-milled cotton linters." RSC Advances 4,15, 7549–7560+ (2014). [DOI: 10.1039/C3RA46338A]

Kim, J. & Reed, J.L. "Refining metabolic models and accounting for regulatory effects." Current Opinion in Biotechnology 29, 34–38+ (2014). [DOI: 10.1016/j.copbio.2014.02.009]

Kim, S., Dale, B.E., Heijungs, R., Azapagic, A., Darlington, T. & Kahlbaum, D. "Indirect land use change and biofuels: mathematical analysis reveals a fundamental flaw in the regulatory approach." Biomass and Bioenergy 71, 408–412+ (2014). [DOI: 10.1016/j.biombioe.2014.09.015]