Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2014	Liere, H., Kim, T.N., Werling, B.P., Meehan, T.D., Landis, D.A. & Gratton, C. "Trophic cascades in agricultural landscapes: indirect effects of landscape composition on crop yield." Ecological Applications 25,3, 652-661+ (2014). [DOI: 10.1890/14-0570.1] DOI Google Scholar	Sustainability
2014	Lim, S., Chundawat, S.P.S. & Fox, B.G. "Expression, purification and characterization of a functional carbohydrate-binding module from Streptomyces sp. SirexAA-E." Protein Expression and Purification 98, 1-9+ (2014). [DOI: 10.1016/j.pep.2014.02.013] DOI Google Scholar	Deconstruction
2014	Lu, F. Lignin: structural analysis, applications in biomaterials, and ecological significance Biochemistry Research Trends. (Nova Science Publishers, Inc, 2014). [DOI: ISBN: 978-1-63117-465-0] DOI Google Scholar	Feedstocks
2014	Lu, F. & Ralph, J. "The DFRC (Derivatization Followed by Reductive Cleavage) method and its applications for lignin characterization." in Lignin: Structural Analysis, Applications in Biomaterials, and Ecological Significance. 27-66+ (Nova Science Publishers, 2014). Google Scholar	Feedstocks
2014	Luterbacher, J.S., Alonso, D.M. & Dumesic, J.A. "Targeted chemical upgrading of lignocellulosic biomass to platform molecules." Green Chemistry 16,12, 4816-4838+ (2014). [DOI: 10.1039/C4GC01160K] DOI Google Scholar	Conversion
2014	Luterbacher, J.S., Rand, J.M., Alonso, M., Han, J., Youngquist, T., Maravelias, C.T., Pfleger, B.F. & Dumesic, J.A. "Non-enzymatic sugar production from biomass using biomass-derived γ-valerolactone." Science 343,6168, 277-280+ (2014). [DOI: 10.1126/science.1246748] DOI Google Scholar	Deconstruction, Conversion
2014	Mandalika, A., Qin, L., Sato, T.K. & Runge, T. "Integrated biorefinery model based on production of furans using open-ended high yield processes." Green Chemistry 16, 2480-2489+ (2014). [DOI: 10.1039/C3GC42424C] DOI Google Scholar	Conversion, Sustainability
2014	Martin, J.A., Johnson, N.V., Gross, S.M., Schnable, J., Meng, X., Wang, M., Coleman-Derr, D., Lindquist, E., Wei, C.-L., Kaeppler, S., et al. "A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing." Scientific Reports 4, 4519+ (2014). [DOI: 10.1038/srep04519] DOI Google Scholar	Feedstocks
2014	Mellmer, M.A., Alonso, D.M., Luterbacher, J.S., Gallo, J.M.R. & Dumesic, J.A. "Effects of γ-valerolactone in hydrolysis of lignocellulosic biomass to monosaccharides." Green Chemistry 16,11, 4659-4662+ (2014). [DOI: 10.1039/C4gc01768d] DOI Google Scholar	Conversion
2014	Mellmer, M.A., Sener, C., Gallo, J.M.R., Luterbacher, J.S., Alonso, D.M. & Dumesic, J.A. "Solvent effects in acid-catalyzed biomass conversion reactions." Angewandte Chemie (International Edition) 53,44, 11872-11875+ (2014). [DOI: 10.1002/anie.201408359] DOI Google Scholar	Conversion
2014	Moskvin, O., McIlwain, S. & Ong, I.M. "CAMDA 2014: Making sense of RNA-Seq data: from low-level processing to functional analysis." Systems Biomedicine 2,2, 31-40+ (2014). [DOI: 10.1080/21628130.2015.1010923] DOI Google Scholar	Conversion
2014	Mullet, J., Morishige, D., McCormick, R., Truong, S., Hilley, J., McKinley, B., Anderson, R., Olson, S.N. & Rooney, W. "Energy Sorghum—a genetic model for the design of C4 grass bioenergy crops." Journal of Experimental Botany 65,13, 3479-3489+ (2014). [DOI: 10.1093/jxb/eru229] DOI Google Scholar	Feedstocks
2014	Niculaes, C., Morreel, K., Kim, H., Lu, F., McKee, L.S., Ivens, B., Haustraete, J., Vanholme, B., De Rycke, R., Hertzberg, M., et al. "Phenylcoumaran benzylic ether reductase prevents accumulation of compounds formed under oxidative conditions in poplar xylem." The Plant Cell 26,9, 3775-3791+ (2014). [DOI: 10.1105/tpc.114.125260] DOI Google Scholar	Feedstocks
2014	Ogle, S.M., Adler, P.R., Breidt, J., Del Grosso, S., Derner, J., Franzluebbers, A., Liebig, M., Linquist, B., Robertson, P., Schoeneberger, M., et al. Chapter 3: Quantifying greenhouse sources and sinks in cropland and grazing land systems Quantifying Greenhouse Gas Fluxes in Agriculture and Forestry: Methods for Entity‐Scale Inventory. Technical Bulletin Number 1939. vol. Technical Bulletin Number 1939 1-142+ https://www.usda.gov/sites/default/files/documents/USDATB1939_07072014.pdf (2014) Google Scholar	Sustainability
2014	Ong, R.G., Chundawat, S.P.S., Hodge, D.B., Keskar, S. & Dale, B.E. "Linking plant biology and pretreatment: understanding the structure and organization of the plant cell wall and interactions with cellulosic biofuel production." in Plants and Bioenergy. 231-253+ (Springer, 2014). [DOI: 10.1007/978-1-4614-9329-7_14] DOI Google Scholar	Deconstruction
2014	Osterholz, W.R., Kucharik, C.J., Hedtcke, J.L. & Posner, J.L. "Seasonal nitrous oxide and methane fluxes from grain- and forage-based production systems in Wisconsin, USA." Journal of Environmental Quality 43,6, 1833-1843+ (2014). [DOI: 10.2134/jeq2014.02.0077] DOI Google Scholar	Sustainability
2014	Palmer, M.M., Forrester, J.A., Rothstein, D.E. & Mladenoff, D.J. "Conversion of open lands to short-rotation woody biomass crops: site variability affects nitrogen cycling and N2O fluxes in the US Northern Lake States." Global Change Biology – Bioenergy 6,4, 450-464+ (2014). [DOI: 10.1111/gcbb.12069] DOI Google Scholar	Sustainability
2014	Parreiras, L.S., Breuer, R.J., Narasimhan, R.A., Higbee, A.J., LaReau, A., Tremaine, M., Qin, L., Willis, L.B., Bice, B.D., Bonfert, B.L., et al. "Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover." PLOS ONE 9,9, (2014). [DOI: 10.1371/journal.pone.0107499] DOI Google Scholar	Deconstruction, Conversion
2014	Peris, D., Sylvester, K., Libkind, D., Goncalves, P., Sampaio, J.P., Alexander, W.G. & Hittinger, C.T. "Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids." Molecular Ecology 23,8, 2031-2045+ (2014). [DOI: 10.1111/mec.12702] DOI Google Scholar	Conversion
2014	Peterson, A.C., Hauschild, J.-P.P., Quarmby, S.T., Krumwiede, D., Lange, O., Lemke, R.A., Grosse-Coosmann, F., Horning, S., Donohue, T.J., Westphall, M.S., et al. "Development of a GC/Quadrupole-Orbitrap mass spectrometer, Part I: Design and characterization." Analytical Chemistry 86,20, 10036-10043+ (2014). [DOI: 10.1021/ac5014767] DOI Google Scholar	Conversion
2014	Petrik, D.L., Karlen, S.D., Cass, C.L., Padmakshan, D., Lu, F., Liu, S., Le Bris, P., Antelme, S., Santoro, N., Wilkerson, C.G., et al. "p-Coumaroyl-CoA:monolignol transferase (PMT) acts specifically in the lignin biosynthetic pathway in Brachypodium distachyon." The Plant Journal 77,5, 713-726+ (2014). [DOI: 10.1111/tpj.12420] DOI Google Scholar	Feedstocks
2014	Piotrowski, J.S., Zhang, Y., Bates, D.M., Keating, D.H., Sato, T.K., Ong, I.M. & Landick, R. "Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors." Frontiers in Microbiology 5, 90+ (2014). [DOI: 10.3389/fmicb.2014.00090] DOI Google Scholar	Conversion
2014	Pryor, S.C., Scavia, D., Downer, C., Gaden, M., Iverson, L., Nordstrom, R., Patz, J. & Robertson, P. "Chapter 18: Midwest." in Climate Change Impacts in the United States: The Third National Climate Assessment. 418-440+ (U.S. Global Change Research Program, 2014). [DOI: 10.7930/J0J1012N] DOI Google Scholar	Sustainability
2014	Rahimi, A., Ulbrich, A., Coon, J.J. & Stahl, S.S. "Formic-acid-induced depolymerization of oxidized lignin to aromatics." Nature 515,7526, 249-252+ (2014). [DOI: 10.1038/nature13867] DOI Google Scholar	Conversion
2014	Ream, T., Woods, D., Schwartz, C., Sanabria, C., Mahoy, J., Walters, E., Kaeppler, H. & Amasino, R. "Interaction of photoperiod and vernalization determine flowering time of Brachypodium distachyon." Plant Physiology 164,2, 694-709+ (2014). [DOI: 10.1104/pp.113.232678] DOI Google Scholar	Feedstocks