Publications

Cole, J.R. & Tiedje, J.M. "History and impact of RDP: a legacy from Carl Woese to microbiology." RNA Biology 11,3, 239–243+ (2014). [DOI: 10.4161/rna.28306]

Cole, J.R., Wang, Q., Fish, J.A., Chai, B., McGarrell, D.M., Sun, Y., Brown, T., Porras-Alfaro, A., Kuske, C.R. & Tiedje, J.M. "Ribosomal Database Project: data and tools for high throughput rRNA analysis." Nucleic Acids Research 42,D1, (2014). [DOI: 10.1093/nar/gkt1244]

Collier, S.M., Ruark, M.D., Oates, L.G., Jokela, W.E. & Dell, C.J. "Measurement of greenhouse gas flux from agricultural soils using static chambers." Journal of Visualized Experiments 90, (2014). [DOI: 10.3791/52110]

Dale, B. "Sobering numbers." Resource Magazine November/December 2014, 25+ (2014).

Dale, B.E., Anderson, J.E., Brown, R.C., Csonka, S., Dale, V.H., Herwick, G., Jackson, R.D., Jordan, N., Kaffka, S., Kline, K.L., et al. "Take a closer look: biofuels can support environmental, economic and social goals." Environmental Science & Technology 48,13, 7200–7203+ (2014). [DOI: 10.1021/es5025433]

Dale, B.E. & Kim, S. "Can the predictions of consequential life cycle assessment be tested in the real world? Comment on “Using Attributional Life Cycle Assessment to Estimate Climate-Change Mitigation...”." Journal of Industrial Ecology 18,3, 466–467+ (2014). [DOI: 10.1111/jiec.12151]

Dale, B.E. & Ong, R.G. "Design, implementation, and evaluation of sustainable bioenergy production systems." Biofuels, Bioproducts and Biorefining 8,4, 487–503+ (2014). [DOI: 10.1002/bbb.1504]

Deal, M.W., Xu, J., John, R., Zenone, T., Chen, J., Jasrotia, P., Kahmark, K., Bossenbroek, J. & Mayer, C. "Net primary production in three bioenergy crop systems following land conversion." Journal of Plant Ecology 7,5, 451–460+ (2014). [DOI: 10.1093/jpe/rtt057]

Deng, K., Takasuka, T.E., Heins, R., Cheng, X., Bergeman, L.F., Shi, J., Aschenbrener, R., Deutsch, S., Singh, S., Sale, K.L., et al. "Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS)." ACS Chemical Biology 9,7, 1470–1479+ (2014). [DOI: 10.1021/cb5000289]

Diehl, B.G., Watts, H.D., Kubicki, J.D., Regner, M.R., Ralph, J. & Brown, N.R. "Towards lignin-protein crosslinking: amino acid adducts of a lignin model quinone methide." Cellulose 21, 1395–1407+ (2014). [DOI: 10.1007/s10570-014-0181-y]

Evans, J., Kim, J., Childs, K.L., Vaillancourt, B., Crisovan, E., Nadety, A., Gerhardt, D.J., Richmond, T.A., Jeddeloh, J.A., Kaeppler, S.M., et al. "Nucleotide polymorphism and copy number variant detection using exome capture and next generation sequencing in the polyploidy grass Panicum virgatum." The Plant Journal 76,6, 993–1008+ (2014). [DOI: 10.1111/tpj.12601]

Gall, D.L., Kim, H., Lu, F., Donohue, T.J., Noguera, D.R. & Ralph, J. "Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway." Journal of Biological Chemistry 289,12, 8656–8667+ (2014). [DOI: 10.1074/jbc.M113.536250]

Gall, D.L., Ralph, J., Donohue, T.J. & Noguera, D.R. "A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers." Environmental Science & Technology 48,20, 12454–12463+ (2014). [DOI: 10.1021/es503886d]

Gao, D., Haarmeyer, C., Balan, V., Whitehead, T.A., Dale, B.E. & Chundawat, S.P. "Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass saccharification." Biotechnology for Biofuels 7, 175+ (2014). [DOI: 10.1186/s13068-014-0175-x]

Gao, X., Kumar, R., Singh, S., Simmons, B., Balan, V., Dale, B. & Wyman, C.E. "Comparison of enzymatic reactivity of corn stover solids prepared by dilute acid, AFEX™, and ionic liquid pretreatments." Biotechnology for Biofuels 7, 71+ (2014). [DOI: 10.1186/1754-6834-7-71]

Gardner, J.G., Crouch, L., Labourel, A., Forsberg, Z., Bukhman, Y.V., Vaaje-Kolstad, G., Gilbert, H.J. & Keating, D.H. "Systems biology defines the biological significance of redox-active proteins during cellulose degradation in an aerobic bacterium." Molecular Microbiology 94,5, 1121–1133+ (2014). [DOI: 10.1111/mmi.12821]

Gaskell, J., Marty, A., Mozuch, M., Kersten, P.J., Bondurant, S.S., Sabat, G., Azarpira, A., Ralph, J., Skyba, O., Mansfield, S.D., et al. "Influence of Populus genotype on gene expression by the wood decay fungus Phanerochaete chrysosporium." Applied and Environmental Microbiology 80,18, 5828–5835+ (2014). [DOI: 10.1128/AEM.01604-14.]

Gilmanov, T.G., Baker, J.M., Bernacchi, C.J., Billesbach, D.P., Burba, G.G., Castro, S., Chen, J., Eugster, W., Fischer, M.L., Gamon, J.A., et al. "Productivity and carbon dioxide exchange of leguminous crops: estimates from flux tower measurements." Agronomy Journal 106,2, 545–559+ (2014). [DOI: 10.2134/agronj2013.0270]

Green, A.R., Lewis, K.M., Barr, J.T., Jones, J.P., Lu, F., Ralph, J., Vermerris, W., Sattler, S.E. & Kang, C. "Determination of the structure and catalytic mechanism of Sorghum bicolor caffeic acid O-methyltransferase and the structural impact of three brown midrib12 mutations." Plant Physiology 165, 1440–1456+ (2014). [DOI: 10.1104/pp.114.241729]

Greenler, J., Nye, L. & Tangen, T. "Cellulose breakdown." The Science Teacher 81, 3–11+ (2014).

Haft, R.J., Keating, D.H., Schwaegler, T., Schwalbach, M.S., Vinokur, J., Tremaine, M., Peters, J.M., Kotlajich, M.V., Pohlmann, E.L., Ong, I.M., et al. "Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria." Proceedings of the National Academy of Sciences of the United States of America 111,25, (2014). [DOI: 10.1073/pnas.1401853111]

Haitjema, C.H., Boock, J.T., Natarajan, A., Dominguez, M.A., Gardner, J.G., Keating, D.H., Withers, S.T. & DeLisa, M.P. "Universal genetic assay for engineering extracellular protein expression." ACS Synthetic Biology 3,2, 74–82+ (2014). [DOI: 10.1021/sb400142b]

Han, J., Sen, M., Alonso, D.M., Dumesic, J.A. & Maravelias, C.T. "A strategy for the simultaneous catalytic conversion of hemicellulose and cellulose from lignocellulosic biomass to liquid transportation fuels." Green Chemistry 16,2, 653–661+ (2014). [DOI: 10.1039/C3GC41511B]

He, J., Pingali, S.V., Chundawat, S.P., Pack, A., Jones, D., Langan, P., Davison, B.H., Urban, V., Evans, B. & O’Neill, H. "Controlled incorporation of deuterium into bacterial cellulose." Cellulose 21,2, 927–936+ (2014). [DOI: 10.1007/s10570-013-0067-4]

Hedtcke, J.L., Sanford, G.R., Hadley, K.E. & Thelen, K.D. "Maximizing land use during switchgrass establishment in the North Central United States." Agronomy Journal 106,2, 596–604+ (2014). [DOI: 10.2134/agronj2013.0410]