Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2015	Yang, Y., Munz, J., Cass, C., Zienkiewicz, A., Kong, Q., Ma, W., Sedbrook, J. & Benning, C. "Ectopic expression of WRINKLED1 affects fatty acid homeostasis in Brachypodium distachyon vegetative tissues." Plant Physiology 169,3, 1836-1847+ (2015). [DOI: 10.1104/pp.15.01236] DOI Google Scholar	Feedstocks
2015	Zhang, B., Penton, R., Xue, C., Wang, Q., Zheng, T. & Tiedje, J.M. "Evaluation of the Ion Torrent Personal Genome Machine for gene-targeted studies using amplicons of the nitrogenase gene nifH." Applied and Environmental Microbiology 81,13, 4536-4545+ (2015). [DOI: 10.1128/AEM.00111-15] DOI Google Scholar	Sustainability
2015	Zhang, X., Izaurralde, R.C., Manowitz, D.H., Sahajpal, R., West, T.O., Thomson, A.M., Xu, M., Zhao, K., LeDuc, S.D. & Williams, J.R. "Regional scale cropland carbon budgets: evaluating a geospatial agricultural modeling system using inventory data." Environmental Modelling & Software 63, 199-216+ (2015). [DOI: 10.1016/j.envsoft.2014.10.005] DOI Google Scholar	Sustainability
2014	Alexander, H.M., Mauck, K.E., Whitfield, A.E., Garrett, K.A. & Malmstrom, C.M. "Plant-virus interactions and the agro-ecological interface." European Journal of Plant Pathology 138,3, 529-547+ (2014). [DOI: 10.1007/s10658-013-0317-1] DOI Google Scholar	Sustainability
2014	Alexander, W.G., Doering, D.T. & Hittinger, C.T. "High-efficiency genome editing and allele replacement in prototrophic and wild strains of Saccharomyces." Genetics 198,3, 859-866+ (2014). [DOI: 10.1534/genetics.114.170118] DOI Google Scholar	Conversion
2014	Almeida, P., Goncalves, C., Teixeira, S., Libkind, D., Bontrager, M., Masneuf-Pomarede, I., Albertin, W., Durrens, P., Sherman, D.J., Marullo, P., et al. "A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum." Nature Communications 5, 4044+ (2014). [DOI: 10.1038/ncomms5044] DOI Google Scholar	Conversion
2014	Aylward, F.O., Suen, G., Biedermann, P.H.W., Adams, A.S., Scott, J.J., Malfatti, S.A., del Rio, T.G., Tringe, S.G., Poulsen, M., Raffa, K.F., et al. "Convergent bacterial microbiotas in the fungal agricultural systems of insects." mBio 5,6, (2014). [DOI: 10.1128/mBio.02077-14] DOI Google Scholar	Deconstruction
2014	Azarpira, A., Ralph, J. & Lu, F. "Catalytic alkaline oxidation of lignin and its model compounds: a pathway to aromatic biochemicals." BioEnergy Research 7,1, 78-86+ (2014). [DOI: 10.1007/s12155-013-9348-x] DOI Google Scholar	Feedstocks
2014	Balan, V. "Current challenges in commercially producing biofuels from lignocellulosic biomass." ISRN Biotechnology Volume 2014, (2014). [DOI: 10.1155/2014/463074] DOI Google Scholar	Deconstruction
2014	Bates, P.D., Johnson, S.R., Cao, X., Li, J., Nam, J.-W., Jaworski, J.G., Ohlrogge, J.B. & Browse, J. "Fatty acid synthesis is inhibited by inefficient utilization of unusual fatty acids for glycerolipid assembly." Proceedings of the National Academy of Sciences of the United States of America 111,3, 1204-1209+ (2014). [DOI: 10.1073/pnas.1318511111] DOI Google Scholar	Feedstocks
2014	Beissinger, T.M., Hirsch, C.N., Vaillancourt, B., Deshpande, S., Barry, K., Buell, R., Kaeppler, S.M., Gianola, D. & de Leon, N. "A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number." Genetics 196,3, 829-40+ (2014). [DOI: 10.1534/genetics.113.160655] DOI Google Scholar	Feedstocks
2014	Bennett, A. & Isaacs, R. "Landscape composition influences pollinators and pollination services in perennial biofuel plantings." Agriculture, Ecosystems & Environment 193, 1-8+ (2014). [DOI: 10.1016/j.agee.2014.04.016] DOI Google Scholar	Sustainability
2014	Bennett, A.B., Meehan, T.D., Gratton, C. & Isaacs, R. "Modeling pollinator community response to contrasting bioenergy scenarios." PLOS ONE 9,11, (2014). [DOI: 10.1371/journal.pone.0110676] DOI Google Scholar	Sustainability
2014	Bhalla, A., Bischoff, K.M., Uppugundla, N., Balan, V. & Sani, R.K. "Novel thermostable endo-xylanase cloned and expressed from bacterium Geobacillus sp. WSUCF1." Bioresource Technology 165, 314-318+ (2014). [DOI: 10.1016/j.biortech.2014.03.112] DOI Google Scholar	Deconstruction
2014	Bonawitz, N.D., Kim, J.I., Tobimatsu, Y., Ciesielski, P.N., Anderson, N.A., Ximenes, E., Maeda, J., Ralph, J., Donohoe, B.S., Ladisch, M., et al. "Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant." Nature 509, 376-380+ (2014). [DOI: 10.1038/nature13084] DOI Google Scholar	Feedstocks
2014	Book, A.J., Lewin, G.R., McDonald, B.R., Takasuka, T.E., Doering, D.T., Adams, A.S., Blodgett, J.A.V., Clardy, J., Raffa, K.F., Fox, B.G., et al. "Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity for the degradation of lignocellulose." Applied and Environmental Microbiology 80,15, 4692-4701+ (2014). [DOI: 10.1128/AEM.01133-14] DOI Google Scholar	Deconstruction
2014	Book, A.J., Yennamalli, R.M., Takasuka, T.E., Currie, C.R., Phillips, G.N. & Fox, B.G. "Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases." Biotechnology for Biofuels 7,1, 109+ (2014). [DOI: 10.1186/1754-6834-7-109] DOI Google Scholar	Deconstruction
2014	Calvey, C.H., Willis, L.B. & Jeffries, T.W. "An optimized transformation protocol for Lipomyces starkeyi." Current Genetics 60,3, 223-230+ (2014). [DOI: 10.1007/s00294-014-0427-0] DOI Google Scholar	Conversion
2014	Cao, H., Walton, J.D., Brumm, P. & Phillips, G.N. "Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum." Journal of Biological Chemistry 289,37, 25624-25638+ (2014). [DOI: 10.1074/jbc.M114.583286] DOI Google Scholar	Deconstruction
2014	Chen, J., John, R., Sun, G., McNulty, S., Normets, A., Xiao, J., Turner, M.G. & Franklin, J.F. "Chapter 6 - Carbon fluxes and storages in forests and landscapes." in Forest Landscapes and Global Change: Challenges for Research and Management. vol. XIII 139-166+ (Springer, 2014). [DOI: 10.1007/978-1-4939-0953-7] DOI Google Scholar	Sustainability
2014	Chiaramonti, D., Martelli, F., Balan, V. & Kumar, S. "Industrial initiatives towards lignocellulosic biofuel deployment: an assessment in US and EU." Chemical Engineering Transactions 37, 313-318+ (2014). [DOI: 10.3303/CET1437053] DOI Google Scholar	Deconstruction
2014	Childs, K.L., Nandety, A., Hirsch, C.N., Góngora-Castillo, E., Schmutz, J., Kaeppler, S.M., Casler, M.D. & Buell, R. "Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass." The Plant Genome 7, 1-13+ (2014). [DOI: 10.3835/plantgenome2013.12.0041] DOI Google Scholar	Feedstocks
2014	Cole, J.R. & Tiedje, J.M. "History and impact of RDP: a legacy from Carl Woese to microbiology." RNA Biology 11,3, 239-243+ (2014). [DOI: 10.4161/rna.28306] DOI Google Scholar	Sustainability
2014	Cole, J.R., Wang, Q., Fish, J.A., Chai, B., McGarrell, D.M., Sun, Y., Brown, T., Porras-Alfaro, A., Kuske, C.R. & Tiedje, J.M. "Ribosomal Database Project: data and tools for high throughput rRNA analysis." Nucleic Acids Research 42,D1, (2014). [DOI: 10.1093/nar/gkt1244] DOI Google Scholar	Sustainability
2014	Collier, S.M., Ruark, M.D., Oates, L.G., Jokela, W.E. & Dell, C.J. "Measurement of greenhouse gas flux from agricultural soils using static chambers." Journal of Visualized Experiments 90, (2014). [DOI: 10.3791/52110] DOI Google Scholar	Sustainability