Publications

Hirsch, C.N., Foerster, J.M., Johnson, J.M., Sekhon, R.S., Muttoni, G., Vaillancourt, B., Peñagaricano, F., Lindquist, E., Pedraza, M.A., Barry, K., et al. "Insights into the maize pan-genome and pan-transcriptome." The Plant Cell 26,1, 121–135+ (2014). [DOI: 10.1105/tpc.113.119982]

Howe, A.C., Jansson, J.K., Malfatti, S.A., Tringe, S.G., Tiedje, J.M. & Brown, T. "Tackling soil diversity with the assembly of large, complex metagenomes." Proceedings of the National Academy of Sciences of the United States of America 111,13, 4904–4909+ (2014). [DOI: 10.1073/pnas.1402564111]

Huang, E.L., Aylward, F.O., Kim, Y.-M., Webb-Robertson, B.-J.M., Nicora, C.D., Hu, Z., Metz, T.O., Lipton, M.S., Smith, R.D., Currie, C.R., et al. "The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation." Environmental Microbiology Reports 6,4, 389–395+ (2014). [DOI: 10.1111/1758-2229.12163]

Humpula, J.F., Uppugundla, N., Vismeh, R., Sousa, L., Chundawat, S.P.S., Jones, D., Balan, V., Dale, B.E. & Cheh, A.M. "Probing the nature of AFEX-pretreated corn stover derived decomposition products that inhibit cellulase activity." Bioresource Technology 152, 38–45+ (2014). [DOI: 10.1016/j.biortech.2013.10.082]

Imam, S., Fitzgerald, C.M., Cook, E.M., Donohue, T.J. & Noguera, D.R. "Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides." Photosynthesis Research 123, 167–182+ (2014). [DOI: 10.1007/s11120-014-0061-1]

Imam, S., Noguera, D.R. & Donohue, T.J. "Global analysis of photosynthesis transcriptional regulatory networks." PLOS Genetics 10,12, e1004837+ (2014). [DOI: 10.1371/journal.pgen.1004837]

Jabbour, D., Angelos, E.R., Mukhopadhyay, A., Womboldt, A., Borrusch, M.S. & Walton, J.D. "Factors contributing to recalcitrance of herbaceous dicotyledons (forbs) to enzymatic deconstruction." Biotechnology for Biofuels 7,1, 52+ (2014). [DOI: 10.1186/1754-6834-7-52]

Jensen, J.K., Johnson, N.R. & Wilkerson, C.G. "Arabidopsis thaliana IRX10 and two related proteins from psyllium and Physcomitrella patens are xylan xylosyltransferases." The Plant Journal 80,2, 207–215+ (2014). [DOI: 10.1111/tpj.12641]

Karkehabadi, S., Helmich, K.E., Kaper, T., Hansson, H., Mikkelsen, N.E., Gudmundsson, M., Piens, K., Fujdala, M., Banerjee, G., Scott-Craig, J.S., et al. "Biochemical characterization and crystal structures of a fungal family 3 β-glucosidase, Cel3A from Hypocrea jecorina." Journal of Biological Chemistry 289, 31624–31637+ (2014). [DOI: 10.1074/jbc.M114.587766]

Keating, D.H., Zhang, Y., Ong, I.M., McIlwain, S., Morales, E.H., Grass, J.A., Tremaine, M., Bothfeld, W., Higbee, A., Ulbrich, A., et al. "Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification." Frontiers in Microbiology 5, 402+ (2014). [DOI: 10.3389/fmicb.2014.00402]

Kelkar, S., Li, Z., Bovee, J., Thelen, K.D., Kriegel, R.M. & Saffron, C.M. "Pyrolysis of North-American grass species: effect of feedstock composition and taxonomy on pyrolysis products." Biomass and Bioenergy 64, 152–161+ (2014). [DOI: 10.1016/j.biombioe.2014.03.032]

Kells, B.J. & Swinton, S.M. "Profitability of cellulosic biomass production in the northern Great Lakes region." Agronomy Journal 106,2, 397–406+ (2014). [DOI: 10.2134/agronj2013.0397]

Kim, H. & Ralph, J. "A gel-state 2D-NMR method for plant cell wall profiling and analysis: model study with the amorphous cellulose and xylan from ball-milled cotton linters." RSC Advances 4,15, 7549–7560+ (2014). [DOI: 10.1039/C3RA46338A]

Kim, J. & Reed, J.L. "Refining metabolic models and accounting for regulatory effects." Current Opinion in Biotechnology 29, 34–38+ (2014). [DOI: 10.1016/j.copbio.2014.02.009]

Kim, S., Dale, B.E., Heijungs, R., Azapagic, A., Darlington, T. & Kahlbaum, D. "Indirect land use change and biofuels: mathematical analysis reveals a fundamental flaw in the regulatory approach." Biomass and Bioenergy 71, 408–412+ (2014). [DOI: 10.1016/j.biombioe.2014.09.015]

Kim, S., Dale, B.E. & Keck, P. "Energy requirements and greenhouse gas emissions of maize production in the USA." BioEnergy Research 7, 763–764+ (2014). [DOI: 10.1007/s12155-013-9399-z]

Kim, S.-J. & Brandizzi, F. "The plant secretory pathway: an essential factory for building the plant cell." Plant and Cell Physiology 55,4, 687–693+ (2014). [DOI: 10.1093/pcp/pct197]

Kim, W.-C., Reca, I.-B., Kim, Y., Park, S., Thomashow, M.F., Keegstra, K. & Han, K.-H. "Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana." Plant Molecular Biology 84, 577–587+ (2014). [DOI: 10.1007/s11103-013-0154-9]

Ko, J.-H., Jeon, H.-W., Kim, W.-C., Kim, J.-Y. & Han, K.-H. "The MYB46/MYB83-mediated transcriptional regulatory programme is a gatekeeper of secondary wall biosynthesis." Annals of Botany 114,6, 1099–1107+ (2014). [DOI: 10.1093/aob/mcu126]

Leducq, J.-B., Charron, G., Samani, P., Dube, A.K., Sylvester, K., James, B., Almeida, P., Sampaio, J.P., Hittinger, C.T., Bell, G., et al. "Local climatic adaptation in a widespread microorganism." Proceedings of the Royal Society B: Biological Sciences 281,1777, 20132472+ (2014). [DOI: 10.1098/rspb.2013.2472]

Lee, Z.M. & Schmidt, T.M. "Bacterial growth efficiency varies in soils under different land management practices." Soil Biology and Biochemistry 69, 282–290+ (2014). [DOI: 10.1016/j.soilbio.2013.11.012]

Lemke, R.A.S., Peterson, A.C., Ziegelhoffer, E.C., Westphall, M.S., Tjellström, H., Coon, J.J. & Donohue, T.J. "Synthesis and scavenging role of furan fatty acids." Proceedings of the National Academy of Sciences of the United States of America 111,33, E3450-E3457+ (2014). [DOI: 10.1073/pnas.1405520111]

Lennon, C.W., Lemmer, K.C., Irons, J.L., Sellman, M.I., Donohue, T.J., Gourse, R.L. & Ross, W. "A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DskA regulates photosynthetic growth." mBio 5,3, e01105–14+ (2014). [DOI: 10.1128/mBio.01105-14]

Lewis, J.A., Broman, A.T., Will, J. & Gasch, A.P. "Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains." Genetics 198,1, 369–382+ (2014). [DOI: 10.1534/genetics.114.167429]

Li, Z., Kelkar, S., Raycraft, L., Garedew, M., Jackson, J.E., Miller, D.J. & Saffron, C.M. "A mild approach for bio-oil stabilization and upgrading: electrocatalytic hydrogenation using ruthenium supported on activated carbon cloth." Green Chemistry 16,2, 844–852+ (2014). [DOI: 10.1039/c3gc42303d]