Publications

Yang, Y., Munz, J., Cass, C., Zienkiewicz, A., Kong, Q., Ma, W., , Sedbrook, J. & Benning, C. "Ectopic expression of WRINKLED1 affects fatty acid homeostasis in Brachypodium distachyon vegetative tissues." Plant Physiology 169,3, 1836–1847+ (2015). [DOI: 10.1104/pp.15.01236]

Zhang, B., Penton, R., Xue, C., Wang, Q., Zheng, T. & Tiedje, J.M. "Evaluation of the Ion Torrent Personal Genome Machine for gene-targeted studies using amplicons of the nitrogenase gene nifH." Applied and Environmental Microbiology 81,13, 4536–4545+ (2015). [DOI: 10.1128/AEM.00111-15]

Zhang, X., Izaurralde, R.C., Manowitz, D.H., Sahajpal, R., West, T.O., Thomson, A.M., Xu, M., Zhao, K., LeDuc, S.D. & Williams, J.R. "Regional scale cropland carbon budgets: evaluating a geospatial agricultural modeling system using inventory data." Environmental Modelling & Software 63, 199–216+ (2015). [DOI: 10.1016/j.envsoft.2014.10.005]

Alexander, H.M., Mauck, K.E., Whitfield, A.E., Garrett, K.A. & Malmstrom, C.M. "Plant-virus interactions and the agro-ecological interface." European Journal of Plant Pathology 138,3, 529–547+ (2014). [DOI: 10.1007/s10658-013-0317-1]

Alexander, W.G., Doering, D.T. & Hittinger, C.T. "High-efficiency genome editing and allele replacement in prototrophic and wild strains of Saccharomyces." Genetics 198,3, 859–866+ (2014). [DOI: 10.1534/genetics.114.170118]

Almeida, P., Goncalves, C., Teixeira, S., Libkind, D., Bontrager, M., Masneuf-Pomarede, I., Albertin, W., Durrens, P., Sherman, D.J., Marullo, P., et al. "A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum." Nature Communications 5, 4044+ (2014). [DOI: 10.1038/ncomms5044]

Aylward, F.O., Suen, G., Biedermann, P.H.W., Adams, A.S., Scott, J.J., Malfatti, S.A., del Rio, T.G., Tringe, S.G., Poulsen, M., Raffa, K.F., et al. "Convergent bacterial microbiotas in the fungal agricultural systems of insects." mBio 5,6, e02077–14+ (2014). [DOI: 10.1128/mBio.02077-14]

Azarpira, A., Ralph, J. & Lu, F. "Catalytic alkaline oxidation of lignin and its model compounds: a pathway to aromatic biochemicals." BioEnergy Research 7,1, 78–86+ (2014). [DOI: 10.1007/s12155-013-9348-x]

Balan, V. "Current challenges in commercially producing biofuels from lignocellulosic biomass." ISRN Biotechnology Volume 2014, Article ID 463074+ (2014). [DOI: 10.1155/2014/463074]

Bates, P.D., Johnson, S.R., Cao, X., Li, J., Nam, J.-W., Jaworski, J.G., Ohlrogge, J.B. & Browse, J. "Fatty acid synthesis is inhibited by inefficient utilization of unusual fatty acids for glycerolipid assembly." Proceedings of the National Academy of Sciences of the United States of America 111,3, 1204–1209+ (2014). [DOI: 10.1073/pnas.1318511111]

Beissinger, T.M., Hirsch, C.N., Vaillancourt, B., Deshpande, S., Barry, K., Buell, R., Kaeppler, S.M., Gianola, D. & de Leon, N. "A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number." Genetics 196,3, 829–40+ (2014). [DOI: 10.1534/genetics.113.160655]

Bennett, A.B. & Isaacs, R. "Landscape composition influences pollinators and pollination services in perennial biofuel plantings." Agriculture, Ecosystems & Environment 193, 1–8+ (2014). [DOI: 10.1016/j.agee.2014.04.016]

Bennett, A.B., Meehan, T.D., Gratton, C. & Isaacs, R. "Modeling pollinator community response to contrasting bioenergy scenarios." PLOS ONE 9,11, e110676+ (2014). [DOI: 10.1371/journal.pone.0110676]

Bhalla, A., Bischoff, K.M., Uppugundla, N., Balan, V. & Sani, R.K. "Novel thermostable endo-xylanase cloned and expressed from bacterium Geobacillus sp. WSUCF1." Bioresource Technology 165, 314–318+ (2014). [DOI: 10.1016/j.biortech.2014.03.112]

Bonawitz, N.D., Kim, J.I., Tobimatsu, Y., Ciesielski, P.N., Anderson, N.A., Ximenes, E., Maeda, J., Ralph, J., Donohoe, B.S., Ladisch, M., et al. "Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant." Nature 509, 376–380+ (2014). [DOI: 10.1038/nature13084]

Book, A.J., Lewin, G.R., McDonald, B.R., Takasuka, T.E., Doering, D.T., Adams, A.S., Blodgett, J.A.V., Clardy, J., Raffa, K.F., Fox, B.G., et al. "Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity for the degradation of lignocellulose." Applied and Environmental Microbiology 80,15, 4692–4701+ (2014). [DOI: 10.1128/AEM.01133-14]

Book, A.J., Yennamalli, R.M., Takasuka, T.E., Currie, C.R., Phillips, G.N. & Fox, B.G. "Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases." Biotechnology for Biofuels 7,1, 109+ (2014). [DOI: 10.1186/1754-6834-7-109]

Calvey, C.H., Willis, L.B. & Jeffries, T.W. "An optimized transformation protocol for Lipomyces starkeyi." Current Genetics 60,3, 223–230+ (2014). [DOI: 10.1007/s00294-014-0427-0]

Cao, H., Walton, J.D., Brumm, P. & Phillips, G.N. "Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum." Journal of Biological Chemistry 289,37, 25624–25638+ (2014). [DOI: 10.1074/jbc.M114.583286]

Chen, J., John, R., Sun, G., McNulty, S., Normets, A., Xiao, J., Turner, M.G. & Franklin, J.F. "Chapter 6 - Carbon fluxes and storages in forests and landscapes." in Forest Landscapes and Global Change: Challenges for Research and Management. vol. XIII 139–166+ (Springer, 2014). [DOI: 10.1007/978-1-4939-0953-7]

Chiaramonti, D., Martelli, F., Balan, V. & Kumar, S. "Industrial initiatives towards lignocellulosic biofuel deployment: an assessment in US and EU." Chemical Engineering Transactions 37, 313–318+ (2014). [DOI: 10.3303/CET1437053]

Childs, K.L., Nandety, A., Hirsch, C.N., Góngora-Castillo, E., Schmutz, J., Kaeppler, S.M., Casler, M.D. & Buell, R. "Generation of transcript assemblies and identification of single nucleotide polymorphisms from seven lowland and upland cultivars of switchgrass." The Plant Genome 7, 1–13+ (2014). [DOI: 10.3835/plantgenome2013.12.0041]

Cole, J.R. & Tiedje, J.M. "History and impact of RDP: a legacy from Carl Woese to microbiology." RNA Biology 11,3, 239–243+ (2014). [DOI: 10.4161/rna.28306]

Cole, J.R., Wang, Q., Fish, J.A., Chai, B., McGarrell, D.M., Sun, Y., Brown, T., Porras-Alfaro, A., Kuske, C.R. & Tiedje, J.M. "Ribosomal Database Project: data and tools for high throughput rRNA analysis." Nucleic Acids Research 42,D1, D633-D642+ (2014). [DOI: 10.1093/nar/gkt1244]

Collier, S.M., Ruark, M.D., Oates, L.G., Jokela, W.E. & Dell, C.J. "Measurement of greenhouse gas flux from agricultural soils using static chambers." Journal of Visualized Experiments 90, e52110+ (2014). [DOI: 10.3791/52110]