Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2015	Hittinger, C.T., Rokas, A., Bai, F.-Y., Boekhout, T., Goncalves, P., Jeffries, T.W., Kominek, J., Lachance, M.-A., Libkind, D., Rosa, C.A., et al. "Genomics and the making of yeast biodiversity." Current Opinion in Genetics and Development 35, 100-109+ (2015). [DOI: 10.1016/j.gde.2015.10.008] DOI Google Scholar	Conversion
2015	Hose, J., Yong, C.M., Sardi, M., Wang, Z., Newton, M.A. & Gasch, A.P. "Dosage compensation can buffer copy-number variation in wild yeast." eLife 4, (2015). [DOI: 10.7554/eLife.05462] DOI Google Scholar	Conversion
2015	Imam, S., Noguera, D.R. & Donohue, T.J. "An integrated approach to reconstructing genome-scale transcriptional regulatory networks." PLOS Computational Biology 11,2, (2015). [DOI: 10.1371/journal.pcbi.1004103] DOI Google Scholar	Conversion
2015	Imam, S., Noguera, D.R. & Donohue, T.J. "CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria." mBio 6,1, (2015). [DOI: 10.1128/mBio.02461-14] DOI Google Scholar	Conversion
2015	Jach-Smith, L.C. & Jackson, R.D. "Nitrogen conservation decreases with fertilizer addition in two perennial grass cropping systems for bioenergy." Agriculture, Ecosystems & Environment 204, 62-71+ (2015). [DOI: 10.1016/j.agee.2015.02.006] DOI Google Scholar	Sustainability
2015	Kallenbach, C.M. & Grandy, S. "Land-use legacies regulate decomposition dynamics following bioenergy crop conversion." Global Change Biology – Bioenergy 7,6, 1232-1244+ (2015). [DOI: 10.1111/gcbb.12218] DOI Google Scholar	Sustainability
2015	Kallenbach, C.M., Grandy, A.S., Frey, S.D. & Diefendorf, A.F. "Microbial physiology and necromass regulate agricultural soil carbon accumulation." Soil Biology and Biochemistry 91, 279-290+ (2015). [DOI: 10.1016/j.soilbio.2015.09.005] DOI Google Scholar	Sustainability
2015	Kilaru, A., Cao, X., Dabbs, P.B., Sung, H.-J., Rahman, M.M., Thrower, N., Zynda, G., Podicheti, R., Ibarra-Laclette, E., Herrera-Estrella, L., et al. "Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp." BMC Plant Biology 15, 203+ (2015). [DOI: 10.1186/s12870-015-0586-2] DOI Google Scholar	Feedstocks
2015	Kim, S. & Dale, B.E. "Comparing alternative cellulosic biomass biorefining systems: centralized versus distributed processing systems." Biomass and Bioenergy 74, 135-147+ (2015). [DOI: 10.1016/j.biombioe.2015.01.018] DOI Google Scholar	Sustainability
2015	Kim, S. & Dale, B.E. "All biomass is local: the cost, volume produced, and global warming impact of cellulosic biofuels depend strongly on logistics and local conditions." Biofuels, Bioproducts and Biorefining 9, 422-434+ (2015). [DOI: 10.1002/bbb.1554] DOI Google Scholar	Sustainability
2015	Kim, S.-J., Held, M.A., Zemelis, S., Wilkerson, C. & Brandizzi, F. "CGR2 and CGR3 have critical overlapping roles in pectin methylesterification and plant growth in Arabidopsis thaliana." The Plant Journal 82,2, 208-220+ (2015). [DOI: 10.1111/tpj.12802] DOI Google Scholar	Feedstocks
2015	Kim, S.-J., Zemelis, S., Keegstra, K. & Brandizzi, F. "The cytoplasmic localization of the catalytic site of CSLF6 supports a channeling model for the biosynthesis of mixed-linkage glucan." The Plant Journal 81,4, 537-547+ (2015). [DOI: 10.1111/tpj.12748] DOI Google Scholar	Feedstocks
2015	Kong, Y., Pena, M.J., Renna, L., Avci, U., Pattathil, S., Tuomivaara, S.T., Li, X., Reiter, W.-D., Brandizzi, F., Hahn, M.G., et al. "Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis." Plant Physiology 167,4, 1296-1306+ (2015). [DOI: 10.1104/pp.114.255943] DOI Google Scholar	Feedstocks
2015	Kravchenko, A.N. & Robertson, P. "Statistical challenges in analyses of chamber-based soil CO2 and N2O emissions data." Soil Science Society of America Journal 79,1, 200-211+ (2015). [DOI: 10.2136/sssaj2014.08.0325] DOI Google Scholar	Sustainability
2015	Lan, W., Lu, F., Regner, M., Zhu, Y., Rencoret, J., Ralph, S.A., Zakai, U.I., Morreel, K., Boerjan, W. & Ralph, J. "Tricin, a flavonoid monomer in monocot lignification." Plant Physiology 167,4, 1284-1295+ (2015). [DOI: 10.1104/pp.114.253757] DOI Google Scholar	Feedstocks
2015	Langner, T., Öztürk, M., Hartmann, S., Cord-Landwehr, S., Moerschbacher, B., Walton, J.D. & Göhre, V. "Chitinases are essential for cell separation in Ustilago maydis." Eukaryotic Cell 14,9, 846-857+ (2015). [DOI: 0.1128/EC.00022-15] DOI Google Scholar	Deconstruction
2015	Lemmer, K.C., Dohnalkova, A.C., Noguera, D.R. & Donohue, T.J. "Oxygen-dependent regulation of bacterial lipid production." Journal of Bacteriology 197,9, 1649-1658+ (2015). [DOI: 10.1128/JB.02510-14] DOI Google Scholar	Conversion
2015	Li, M., Heckwolf, M., Crowe, J.D., Williams, D.L., Magee, T.D., Kaeppler, S.M., de Leon, N. & Hodge, D.B. "Cell-wall properties contributing to improved deconstruction by alkaline pre-treatment and enzymatic hydrolysis in diverse maize (Zea mays L.) lines." Journal of Experimental Botany 66,14, 4305-4315+ (2015). [DOI: 10.1093/jxb/erv016] DOI Google Scholar	Feedstocks, Deconstruction
2015	Li, Z., Bansal, N., Azarpira, A., Bhalla, A., Chen, C.H., Ralph, J., Hegg, E.L. & Hodge, D.B. "Chemical and structural changes associated with Cu-catalyzed alkaline-oxidative delignification of hybrid poplar." Biotechnology for Biofuels 8, 123+ (2015). [DOI: 10.1186/s13068-015-0300-5] DOI Google Scholar	Feedstocks, Deconstruction
2015	Lin, T.-Y., Santos, T.M.A., Kontur, W.S., Donohue, T.J. & Weibel, D.B. "A cardiolipin-deficient mutant of Rhodobacter sphaeroides has an altered cell shape and is impaired in biofilm formation." Journal of Bacteriology 197,21, 3446-3455+ (2015). [DOI: 10.1128/JB.00420-15] DOI Google Scholar	Conversion
2015	Lin, Y., King, J.Y., Karlen, S.D. & Ralph, J. "Using 2D NMR spectroscopy to assess effects of UV radiation on cell wall chemistry during litter decomposition." Biogeochemistry 125,3, 427-436+ (2015). [DOI: 10.1007/s10533-015-0132-1] DOI Google Scholar	Feedstocks
2015	Liu, J., Rice, A., McGlew, K., Shaw, V., Park, H., Clemente, T., Pollard, M., Ohlrogge, J. & Durrett, T.P. "Metabolic engineering of oilseed crops to produce high levels of novel acetyl glyceride oils with reduced viscosity, freezing point and calorific value." Plant Biotechnology Journal 13,6, 858-865+ (2015). [DOI: 10.1111/pbi.12325] DOI Google Scholar	Feedstocks
2015	Liu, J., Tjellstrom, H., McGlew, K., Shaw, V., Rice, A., Simpson, J., Kosma, D., Ma, W., Yang, W., Strawsine, M., et al. "Field production, purification and analysis of high-oleic acetyl-triacylglycerols from transgenic Camelina sativa." Industrial Crops and Products 65, 259-268+ (2015). [DOI: 10.1016/j.indcrop.2014.11.019] DOI Google Scholar	Feedstocks
2015	Liu, Y., Mellmer, M.A., Alonso, D.M. & Dumesic, J.A. "Effects of water on the copper-catalyzed conversion of hydroxymethylfurfural in tetrahydrofuran." ChemSusChem 8,23, 3983-3986+ (2015). [DOI: 10.1002/cssc.201501122] DOI Google Scholar	Conversion
2015	Long, M.R., Ong, W.K. & Reed, J.L. "Computational methods in metabolic engineering for strain design." Current Opinion in Biotechnology 34, 135-141+ (2015). [DOI: 10.1016/j.copbio.2014.12.019] DOI Google Scholar	Conversion