Publications

Yelle, D.J. & Ralph, J. "Characterizing phenol–formaldehyde adhesive cure chemistry within the wood cell wall." International Journal of Adhesion & Adhesives 70, 26–36+ (2016). [DOI: 10.1016/j.ijadhadh.2016.05.002]

Yoo, C.G., Kim, H., Lu, F., Azarpira, A., Pan, X., Oh, K.K., Kim, J.S., Ralph, J. & Kim, T.H. "Understanding the physicochemical characteristics and the improved enzymatic saccharification of corn stover pretreated with aqueous and gaseous ammonia." BioEnergy Research 9, 67–76+ (2016). [DOI: 10.1007/s12155-015-9662-6]

Yue, F., Lu, F., Ralph, S. & Ralph, J. "Identification of 4-O-5-units in softwood lignins via definitive lignin models and NMR." Biomacromolecules 17, 1909–1920+ (2016). [DOI: 10.1021/acs.biomac.6b00256]

Zenone, T., Zona, D., Gelfand, I., Gielen, B., Camino-Serrano, M. & Ceulemans, R. "CO2 uptake is offset by CH4 and N2O emissions in a poplar short-rotation coppice." Global Change Biology – Bioenergy 8,3, 524–538+ (2016). [DOI: 10.1111/gcbb.12269]

Zhang, M., Cao, X., Jia, Q. & Ohlrogge, J. "FUSCA3 activates triacylglycerol accumulation in Arabidopsis seedlings and tobacco BY2 cells." The Plant Journal 88, 95–107+ (2016). [DOI: 10.1111/tpj.13233]

Zhou, X., Peris, D., Kominek, J., Kurtzman, C.P., Hittinger, C.T. & Rokas, A. "In silico whole genome sequencer and analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies." G3: Genes | Genomes | Genetics 6, 3655–3662+ (2016). [DOI: 10.1534/g3.116.034249]

Zienkiewicz, K., Du, Z.-Y., Ma, W., Vollheyde, K. & Benning, C. "Stress-induced neutral lipid biosynthesis in microalgae—Molecular, cellular and physiological insights." Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1861,9, 1269–1281+ (2016). [DOI: 10.1016/j.bbalip.2016.02.008]

Abraha, M., Chen, J., Chu, H., Zenone, T., John, R., Su, Y.-J., Hamilton, S.K. & Robertson, P. "Evapotranspiration of annual and perennial biofuel crops in a variable climate." Global Change Biology – Bioenergy 7, 1344–1356+ (2015). [DOI: 10.1111/gcbb.12239]

Anderson, N.A., Tobimatsu, Y., Ciesielski, P.N., Ximenes, E., Ralph, J., Donohoe, B.S., Ladisch, M. & Chapple, C. "Manipulation of guaiacyl and syringyl monomer biosynthesis in an Arabidopsis cinnamyl alcohol dehydrogenase mutant results in atypical lignin biosynthesis and modified cell wall structure." The Plant Cell 27,8, 2195–2209+ (2015). [DOI: 10.1105/tpc.15.00373]

Araya, F., Troncoso, E., Mendonca, R.T. & Freer, J. "Condensed lignin structures and re-localization achieved at high severities in autohydrolysis of Eucalyptus globulus wood and their relationship with cellulose accessibility." Biotechnology and Bioengineering 112,9, 1783–1791+ (2015). [DOI: 10.1002/bit.25604]

Austin, S., Kontur, W.S., Ulbrich, A., Oshlag, Z., Zhang, W., Higbee, A., Zhang, Y., Coon, J.J., Hodge, D.B., Donohue, T.J., et al. "Metabolism of multiple aromatic compounds in corn stover hydrolysate by Rhodopseudomonas palustris." Environmental Science & Technology 49,14, 8914–8922+ (2015). [DOI: 10.1021/acs.est.5b02062]

Aylward, F.O., Khadempour, L., Tremmel, D.M., McDonald, B.R., Nicora, C.D., Wu, S., Moore, R.J., Orton, D.J., Monroe, M.E., Piehowski, P.D., et al. "Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants." PLOS ONE 10,8, (2015). [DOI: 10.1371/journal.pone.0134752]

Bahlai, C.A., Werf, W. vander, O’Neal, M., Hemerik, L. & Landis, D.A. "Shifts in dynamic regime of an invasive lady beetle are linked to the invasion and insecticidal management of its prey." Ecological Applications 25,7, 1807–1818+ (2015). [DOI: 10.1890/14-2022.1]

Baker, E., Wang, B., Bellora, N., Peris, D., Hulfachor, A.B., Koshalek, J.A., Adams, M., Libkind, D. & Hittinger, C.T. "The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts." Molecular Biology and Evolution 32,11, 2818–2831+ (2015). [DOI: 10.1093/molbev/msv168]

Bandaru, V., Izaurralde, C. & Zhao, K. "Biomass potential of switchgrass and miscanthus on the USA’s marginal lands." in Sustainable Biofuels: An Ecological Assessment of Future Energy. 299–317+ (DeGruyter, 2015).

Bansal, N., Bhalla, A., Pattathil, S., Adelman, S.L., Hahn, M.G., Hodge, D.B. & Hegg, E.L. "Cell wall-associated transition metals improve alkaline-oxidative pretreatment in diverse hardwoods." Green Chemistry 18,5, 1405–1415+ (2015). [DOI: 10.1039/C5GC01748C]

Beissinger, T.M., Rosa, G.J.M., Kaeppler, S.M., Gianola, D. & de Leon, N. "Defining window-boundaries for genomic analyses using smoothing spline techniques." Genetics Selection Evolution 47,1, 30+ (2015). [DOI: 10.1186/s12711-015-0105-9]

Bhardwaj, A.K., Zenone, T. & Chen, J. Sustainable Biofuels: An Ecological Assessment of Future Energy 346+ (DeGruyter, 2015).

Bianchetti, C.M., Takasuka, T.E., Deutsch, S., Udell, H.S., Yik, E.J., Bergeman, L.F. & Fox, B.G. "Active site and laminarin binding in glycoside hydrolase family 55." Journal of Biological Chemistry 290,19, 11819–11832+ (2015). [DOI: 10.1074/jbc.M114.623579]

Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.- juan & Mead, D.A. "Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 81+ (2015). [DOI: 10.1186/s40793-015-0075-0]

Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.- juan & Mead, D.A. "Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath Hot Spring in Yellowstone National Park." BioEnergy Research 8, 1039–1045+ (2015). [DOI: 10.1007/s12155-015-9585-2]

Brumm, P.J., De Maayer, P., Mead, D.A. & Cowan, D.A. "Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies." Frontiers in Microbiology 6, 430+ (2015). [DOI: 10.3389/fmicb.2015.00430]

Brumm, P.J., Land, M.L. & Mead, D.A. "Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 73+ (2015). [DOI: 10.1186/s40793-015-0031-z]

Bukhman, Y.V., DiPiazza, N.W., Piotrowski, J., Shao, J., Halstead, A.G., Bui, M.D., Xie, E. & Sato, T.K. "Modeling microbial growth curves with GCAT." BioEnergy Research 8, 1022–1030+ (2015). [DOI: 10.1007/s12155-015-9584-3]

Caes, B.R., Teixeira, R.E., Knapp, K.G. & Raines, R.T. "Biomass to furanics: renewable routes to chemicals and fuels." ACS Sustainable Chemistry and Engineering 3,11, 2591–2605+ (2015). [DOI: 10.1021/acssuschemeng.5b00473]