Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2016	Zenone, T., Zona, D., Gelfand, I., Gielen, B., Camino-Serrano, M. & Ceulemans, R. "CO2 uptake is offset by CH4 and N2O emissions in a poplar short-rotation coppice." Global Change Biology – Bioenergy 8,3, 524-538+ (2016). [DOI: 10.1111/gcbb.12269] DOI Google Scholar	Sustainability
2016	Zhang, M., Cao, X., Jia, Q. & Ohlrogge, J. "FUSCA3 activates triacylglycerol accumulation in Arabidopsis seedlings and tobacco BY2 cells." The Plant Journal 88, 95-107+ (2016). [DOI: 10.1111/tpj.13233] DOI Google Scholar	Feedstocks
2016	Zhou, X., Peris, D., Kominek, J., Kurtzman, C.P., Hittinger, C.T. & Rokas, A. "In silico whole genome sequencer and analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies." G3: Genes \| Genomes \| Genetics 6, 3655-3662+ (2016). [DOI: 10.1534/g3.116.034249] DOI Google Scholar	Conversion
2016	Zienkiewicz, K., Du, Z.-Y., Ma, W., Vollheyde, K. & Benning, C. "Stress-induced neutral lipid biosynthesis in microalgae—Molecular, cellular and physiological insights." Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1861,9, 1269-1281+ (2016). [DOI: 10.1016/j.bbalip.2016.02.008] DOI Google Scholar	Feedstocks
2015	Abraha, M., Chen, J., Chu, H., Zenone, T., John, R., Su, Y.-J., Hamilton, S.K. & Robertson, P. "Evapotranspiration of annual and perennial biofuel crops in a variable climate." Global Change Biology – Bioenergy 7, 1344-1356+ (2015). [DOI: 10.1111/gcbb.12239] DOI Google Scholar	Sustainability
2015	Anderson, N.A., Tobimatsu, Y., Ciesielski, P.N., Ximenes, E., Ralph, J., Donohoe, B.S., Ladisch, M. & Chapple, C. "Manipulation of guaiacyl and syringyl monomer biosynthesis in an Arabidopsis cinnamyl alcohol dehydrogenase mutant results in atypical lignin biosynthesis and modified cell wall structure." The Plant Cell 27,8, 2195-2209+ (2015). [DOI: 10.1105/tpc.15.00373] DOI Google Scholar	Feedstocks
2015	Araya, F., Troncoso, E., Mendonca, R.T. & Freer, J. "Condensed lignin structures and re-localization achieved at high severities in autohydrolysis of Eucalyptus globulus wood and their relationship with cellulose accessibility." Biotechnology and Bioengineering 112,9, 1783-1791+ (2015). [DOI: 10.1002/bit.25604] DOI Google Scholar	Feedstocks
2015	Austin, S., Kontur, W.S., Ulbrich, A., Oshlag, Z., Zhang, W., Higbee, A., Zhang, Y., Coon, J.J., Hodge, D.B., Donohue, T.J., et al. "Metabolism of multiple aromatic compounds in corn stover hydrolysate by Rhodopseudomonas palustris." Environmental Science & Technology 49,14, 8914-8922+ (2015). [DOI: 10.1021/acs.est.5b02062] DOI Google Scholar	Feedstocks, Deconstruction, Conversion
2015	Aylward, F.O., Khadempour, L., Tremmel, D.M., McDonald, B.R., Nicora, C.D., Wu, S., Moore, R.J., Orton, D.J., Monroe, M.E., Piehowski, P.D., et al. "Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants." PLOS ONE 10,8, (2015). [DOI: 10.1371/journal.pone.0134752] DOI Google Scholar	Deconstruction
2015	Bahlai, C.A., Werf, W. vander, O'Neal, M., Hemerik, L. & Landis, D.A. "Shifts in dynamic regime of an invasive lady beetle are linked to the invasion and insecticidal management of its prey." Ecological Applications 25,7, 1807-1818+ (2015). [DOI: 10.1890/14-2022.1] DOI Google Scholar	Sustainability
2015	Baker, E.C., Wang, B., Bellora, N., Peris, D., Hulfachor, A.B., Koshalek, J.A., Adams, M., Libkind, D. & Hittinger, C.T. "The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts." Molecular Biology and Evolution 32,11, 2818-2831+ (2015). [DOI: 10.1093/molbev/msv168] DOI Google Scholar	Conversion
2015	Bandaru, V., Izaurralde, C. & Zhao, K. "Biomass potential of switchgrass and miscanthus on the USA’s marginal lands." in Sustainable Biofuels: An Ecological Assessment of Future Energy. 299-317+ (DeGruyter, 2015). Google Scholar	Sustainability
2015	Bansal, N., Bhalla, A., Pattathil, S., Adelman, S.L., Hahn, M.G., Hodge, D.B. & Hegg, E.L. "Cell wall-associated transition metals improve alkaline-oxidative pretreatment in diverse hardwoods." Green Chemistry 18,5, 1405-1415+ (2015). [DOI: 10.1039/C5GC01748C] DOI Google Scholar	Deconstruction
2015	Beissinger, T.M., Rosa, G.J.M., Kaeppler, S.M., Gianola, D. & de Leon, N. "Defining window-boundaries for genomic analyses using smoothing spline techniques." Genetics Selection Evolution 47,1, 30+ (2015). [DOI: 10.1186/s12711-015-0105-9] DOI Google Scholar	Feedstocks
2015	Bhardwaj, A.K., Zenone, T. & Chen, J. Sustainable Biofuels: An Ecological Assessment of Future Energy 346+ (DeGruyter, 2015). Google Scholar	Sustainability
2015	Bianchetti, C.M., Takasuka, T.E., Deutsch, S., Udell, H.S., Yik, E.J., Bergeman, L.F. & Fox, B.G. "Active site and laminarin binding in glycoside hydrolase family 55." Journal of Biological Chemistry 290,19, 11819-11832+ (2015). [DOI: 10.1074/jbc.M114.623579] DOI Google Scholar	Deconstruction
2015	Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-juan & Mead, D.A. "Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 81+ (2015). [DOI: 10.1186/s40793-015-0075-0] DOI Google Scholar	Deconstruction
2015	Brumm, P., Land, M.L., Hauser, L.J., Jeffries, C.D., Chang, Y.-juan & Mead, D.A. "Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath Hot Spring in Yellowstone National Park." BioEnergy Research 8, 1039-1045+ (2015). [DOI: 10.1007/s12155-015-9585-2] DOI Google Scholar	Deconstruction
2015	Brumm, P.J., De Maayer, P., Mead, D.A. & Cowan, D.A. "Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies." Frontiers in Microbiology 6, 430+ (2015). [DOI: 10.3389/fmicb.2015.00430] DOI Google Scholar	Deconstruction
2015	Brumm, P.J., Land, M.L. & Mead, D.A. "Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park." Standards in Genomic Sciences 10, 73+ (2015). [DOI: 10.1186/s40793-015-0031-z] DOI Google Scholar	Deconstruction
2015	Bukhman, Y.V., DiPiazza, N.W., Piotrowski, J., Shao, J., Halstead, A.G.W., Bui, M.D., Xie, E. & Sato, T.K. "Modeling microbial growth curves with GCAT." BioEnergy Research 8, 1022-1030+ (2015). [DOI: 10.1007/s12155-015-9584-3] DOI Google Scholar	Conversion
2015	Caes, B.R., Teixeira, R.E., Knapp, K.G. & Raines, R.T. "Biomass to furanics: renewable routes to chemicals and fuels." ACS Sustainable Chemistry and Engineering 3,11, 2591-2605+ (2015). [DOI: 10.1021/acssuschemeng.5b00473] DOI Google Scholar	Conversion
2015	Campioli, M., Vicca, S., Luyssaert, S., Bilcke, J., Ceschia, E., Ciais, P., Fernández-Martínez, M., Malhi, Y., Obersteiner, M., Olefeldt, D., et al. "Biomass production efficiency controlled by management in temperate and boreal ecosystems." Nature Geoscience 8, 843-846+ (2015). [DOI: 10.1038/ngeo2553] DOI Google Scholar	Sustainability
2015	Carpita, N.S., Ralph, J. & McCann, M. "The cell wall." in Biochemistry and Molecuar Biology of Plants, 2nd Edition. 45-110+ (Wiley, 2015). Google Scholar	Feedstocks
2015	Cass, C.L., Peraldi, A., Dowd, P.F., Mottiar, Y., Santoro, N., Karlen, S.D., Bukhman, Y.V., Foster, C.E., Thrower, N., Bruno, L.C., et al. "Effects of PHENYLALANINE AMMONIA LYASE (PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses in Brachypodium." Journal of Experimental Botany 66,14, 4317-4335+ (2015). [DOI: 10.1093/jxb/erv269] DOI Google Scholar	Feedstocks