Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2016	Kuang, M.C., Hutchins, P.D., Russell, J.D., Coon, J.J. & Hittinger, C.T. "Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network." eLife 5, (2016). [DOI: 10.7554/eLife.19027] DOI Google Scholar	Conversion
2016	Kumar, R., Singh, S. & Balan, V. Valorization of lignocellulosic biomass in a biorefinery: from logistics to environmental and performance impact Biochemistry Research Trends. (Nova Publishers, 2016). Google Scholar	Deconstruction
2016	Lacroix, C., Renner, K., Cole, E., Seabloom, E.W., Borer, E.T. & Malmstrom, C.M. "Methodological guidelines for accurate detection of viruses in wild plant species." Applied and Environmental Microbiology 82,6, 1966-1975+ (2016). [DOI: 10.1128/aem.03538-15] DOI Google Scholar	Sustainability
2016	Lan, W., Morreel, K., Lu, F., Rencoret, J., del Río, J.C., Voorend, W., Vermerris, W., Boerjan, W. & Ralph, J. "Maize tricin-oligolignol metabolites and their implications for monocot lignification." Plant Physiology 171,2, 810-820+ (2016). [DOI: 10.1104/pp.16.02012] DOI Google Scholar	Feedstocks
2016	Lan, W., Rencoret, J., Lu, F., Karlen, S.D., Smith, B.G., Harris, P.J., del Río, J.C. & Ralph, J. "Tricin-lignins: occurrence and quantitation of tricin in relation to phylogeny." The Plant Journal 88,6, 1046-1057+ (2016). [DOI: 10.1111/tpj.13315] DOI Google Scholar	Feedstocks
2016	Leducq, J.-B., Nielly-Thibault, L., Charron, G., Eberlein, C., Verta, J.-P., Samani, P., Sylvester, K., Hittinger, C.T., Bell, G. & Landry, C.R. "Speciation driven by hybridization and chromosomal plasticity in a wild yeast." Nature Microbiology 1, 15003+ (2016). [DOI: 10.1038/nmicrobiol.2015.3] DOI Google Scholar	Conversion
2016	Lewin, G.R., Carlos, C., Chevrette, M.G., Horn, H.A., McDonald, B.R., Stankey, R.J., Fox, B.G. & Currie, C.R. "Evolution and ecology of Actinobacteria and their bioenergy applications." Annual Review of Microbiology 70, 235-254+ (2016). [DOI: 10.1146/annurev-micro-102215-095748] DOI Google Scholar	Deconstruction
2016	Lewin, G.R., Johnson, A.L., Soto, R.D., Perry, K., Book, A.J., Horn, H.A., Pinto-Tomas, A.A. & Currie, C.R. "Cellulose-enriched microbial communities from leaf-cutter ant (Atta colombica) refuse dumps vary in taxonomic composition and degradation ability." PLOS ONE 11,3, (2016). [DOI: 10.1371/journal.pone.0151840] DOI Google Scholar	Deconstruction
2016	Liang, C., Jesus, E. da C., Duncan, D.S., Quensen, J.F., Jackson, R.D., Balser, T.C. & Tiedje, J.M. "Switchgrass rhizospheres stimulate microbial biomass but deplete microbial necromass in agricultural soils of the upper Midwest, USA." Soil Biology and Biochemistry 94, 173-180+ (2016). [DOI: 10.1016/j.soilbio.2015.11.020] DOI Google Scholar	Sustainability
2016	Liang, C., Kao-Kniffin, J., Sanford, G.R., Wickings, K., Balser, T.C. & Jackson, R.D. "Microorganisms and their residues under restored perennial grassland communities of varying diversity." Soil Biology and Biochemistry 103, 192-200+ (2016). [DOI: 10.1016/j.soilbio.2016.08.002] DOI Google Scholar	Sustainability
2016	Lopes, M.R., Morais, C.G., Kominek, J., Cadete, R.M., Soares, M.A., Uetanabaro, A.P.T., Fonseca, C., Lachance, M.-A., Hittinger, C.T. & Rosa, C.A. "Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora Hagerdaliae f. a., sp. nov. and Spathaspora gorwiae f. a., sp. nov." FEMS Yeast Research 16,4, (2016). [DOI: 10.1093/femsyr/fow044] DOI Google Scholar	Conversion
2016	Luo, D., Callari, R., Hamberger, B., Wubshet, S.G., Nielsen, M.T., Andersen-Ranberg, J., Hallström, B.M., Cozzi, F., Heider, H., Møller, B.L., et al. "Oxidation and cyclization of casbene in the biosynthesis of Euphorbia factors from mature seeds of Euphorbia lathyris L." Proceedings of the National Academy of Sciences of the United States of America 113,34, (2016). [DOI: 10.1073/pnas.1607504113] DOI Google Scholar	Feedstocks
2016	Ma, W., Kong, Q., Mantyla, J.J., Yang, Y., Ohlrogge, J.B. & Benning, C. "14-3-3 protein mediates plant seed oil biosynthesis through interaction with AtWRI1." The Plant Journal 88,2, 228-235+ (2016). [DOI: 10.1111/tpj.13244] DOI Google Scholar	Feedstocks
2016	McAndrew, R.P., Sathitsuksanoh, N., Mbughuni, M.M., Heins, R.A., Pereira, J.H., George, A., Sale, K.L., Fox, B.G., Simmons, B.A. & Adams, P.D. "Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase." Proceedings of the National Academy of Sciences of the United States of America 113,50, 14324-14329+ (2016). [DOI: 10.1073/pnas.1608917113] DOI Google Scholar	Deconstruction
2016	McCormick, R.F., Truong, S.K. & Mullet, J.E. "3D sorghum reconstructions from depth images identify QTL regulating shoot architecture." Plant Physiology 172,2, 823-834+ (2016). [DOI: 10.1104/pp.16.00948] DOI Google Scholar	Feedstocks
2016	McDaniel, M.D., Grandy, A.S., Tiemann, L.K. & Weintraub, M.N. "Eleven years of crop diversification alters decomposition dynamics of litter mixtures incubated with soil." Ecosphere 7,8, (2016). [DOI: 10.1002/ecs2.1426] DOI Google Scholar	Sustainability
2016	McIlwain, S.J., Peris, D., Sardi, M., Moskvin, O.V., Zhan, F., Myers, K.S., Riley, N.M., Buzzell, A., Parreiras, L.S., Ong, I.M., et al. "Genome sequence and analysis of a stress-tolerant, wild-derived strain of Saccharomyces cerevisiae used in biofuels research." G3: Genes \| Genomes \| Genetics 6,6, 1757-1766+ (2016). [DOI: 10.1534/g3.116.029389] DOI Google Scholar	Conversion
2016	McKinley, B., Rooney, W., Wilkerson, C. & Mullet, J. "Dynamics of biomass partitioning, stem gene expression, cell wall biosynthesis, and sucrose accumulation during development of Sorghum bicolor." The Plant Journal 88,4, 662-680+ (2016). [DOI: 10.1111/tpj.13269] DOI Google Scholar	Feedstocks
2016	Montella, S., Balan, V., Sousa, L. da C., Gunawan, C., Giacobbe, S., Pepe, O. & Faraco, V. "Saccharification of newspaper waste after ammonia fiber expansion or extractive ammonia." AMB Express 6, 18+ (2016). [DOI: 10.1186/s13568-016-0189-9] DOI Google Scholar	Deconstruction
2016	Motagamwala, A.H., Won, W., Maravelias, C.T. & Dumesic, J.A. "An engineered solvent system for sugar production from lignocellulosic biomass using biomass derived γ-valerolactone." Green Chemistry 18,21, 5756-5763+ (2016). [DOI: 10.1039/C6GC02297A] DOI Google Scholar	Deconstruction, Conversion
2016	Mottiar, Y., Vanholme, R., Boerjan, W., Ralph, J. & Mansfield, S.D. "Designer lignins: harnessing the plasticity of lignification." Current Opinion in Biotechnology 37, 190-200+ (2016). [DOI: 10.1016/j.copbio.2015.10.009] DOI Google Scholar	Feedstocks
2016	Ng, R.T.L. & Maravelias, C.T. "Design of cellulosic ethanol supply chains with regional depots." Industrial and Engineering Chemistry Research 55,12, 3420-3432+ (2016). [DOI: 10.1021/acs.iecr.5b03677] DOI Google Scholar	Deconstruction
2016	Oates, L.G., Duncan, D.S., Gelfand, I., Millar, N., Robertson, P. & Jackson, R.D. "Nitrous oxide emissions during establishment of eight alternative cellulosic bioenergy cropping systems in the North Central United States." Global Change Biology – Bioenergy 8,3, 539-549+ (2016). [DOI: 10.1111/gcbb.12268] DOI Google Scholar	Sustainability
2016	Oates, L.G., Duncan, D.S., Sanford, G.R., Liang, C. & Jackson, R.D. "Bioenergy cropping systems that incorporate native grasses stimulate growth of plant-associated soil microbes in the absence of nitrogen fertilization." Agriculture, Ecosystems & Environment 233, 396-403+ (2016). [DOI: 10.1016/j.agee.2016.09.008] DOI Google Scholar	Sustainability
2016	Ong, R.G., Higbee, A., Bottoms, S., Dickinson, Q., Xie, D., Smith, S.A., Serate, J., Pohlmann, E., Jones, A.D., Coon, J.J., et al. "Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate." Biotechnology for Biofuels 9, 237+ (2016). [DOI: 10.1186/s13068-016-0657-0] DOI Google Scholar	Deconstruction, Conversion, Sustainability