Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2016	Duncan, D.S., Jewell, K.A., Suen, G. & Jackson, R.D. "Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods." Soil Biology and Biochemistry 96, 160-168+ (2016). [DOI: 10.1016/j.soilbio.2016.02.002] DOI Google Scholar	Sustainability
2016	Duran, B.E.L., Duncan, D.S., Oates, L.G., Kucharik, C.J. & Jackson, R.D. "Nitrogen fertilization effects on productivity and nitrogen loss in three grass-based perennial bioenergy cropping systems." PLOS ONE 11,3, (2016). [DOI: 10.1371/journal.pone.0151919] DOI Google Scholar	Sustainability
2016	Ferris, A.M. & Rothamer, D.A. "Methodology for the experimental measurement of vapor-liquid equilibrium distillation curves using a modified ASTM D86 setup." Fuel 182, 467-479+ (2016). [DOI: 10.1016/j.fuel.2016.05.099] DOI Google Scholar	Conversion
2016	Fox, A.F., Kim, T.N., Bahlai, C.A., Woltz, M., Gratton, C. & Landis, D.A. "Cover crops have neutral effects on predator communities and biological control services in annual cellulosic bioenergy cropping systems." Agriculture, Ecosystems & Environment 232, 101-109+ (2016). [DOI: 10.1016/j.agee.2016.07.003] DOI Google Scholar	Sustainability
2016	Garoutte, A., Cardenas, E., Tiedje, J. & Howe, A. "Methodologies for probing the metatranscriptome of grassland soil." Journal of Microbiological Methods 131, 122-129+ (2016). [DOI: 10.1016/j.mimet.2016.10.018] DOI Google Scholar	Sustainability
2016	Geertsema, W., Rossing, W.A.H., Landis, D.A., Bianchi, F.J.J.A., van Rijn, P.C.J., Schaminée, J.H.J., Tscharntke, T. & van der Werf, W. "Actionable knowledge for ecological intensification of agriculture." Frontiers in Ecology and the Environment 14,4, 209-216+ (2016). [DOI: 10.1002/fee.1258] DOI Google Scholar	Sustainability
2016	Gelfand, I., Shcherbak, I., Millar, N., Kravchenko, A.N. & Robertson, P. "Long-term nitrous oxide fluxes in annual and perennial agricultural and unmanaged ecosystems in the upper Midwest USA." Global Change Biology 22,11, 3594-3607+ (2016). [DOI: 10.1111/gcb.13426] DOI Google Scholar	Sustainability
2016	Ghosh, I.N. & Landick, R. "OptSSeq: high-throughput sequencing readout of growth enrichment defines optimal gene expression elements for homoethanologenesis." ACS Synthetic Biology 5,12, 1519-1534+ (2016). [DOI: 10.1021/acssynbio.6b00121] DOI Google Scholar	Conversion
2016	Guo, J., Cole, J.R., Zhang, Q., Brown, T. & Tiedje, J.M. "Microbial community analysis with ribosomal gene fragments from shotgun metagenomes." Applied and Environmental Microbiology 82,1, 157-166+ (2016). [DOI: 10.1128/AEM.02772-15] DOI Google Scholar	Sustainability
2016	Ha, C.M., Escamilla-Trevino, L., Yarce, J.C.S., Kim, H., Ralph, J., Chen, F. & Dixon, R.A. "An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula." The Plant Journal 86,5, 363-375+ (2016). [DOI: 10.1111/tpj.13177] DOI Google Scholar	Feedstocks
2016	Han, J., Chen, J., Miao, Y. & Wan, S. "Multiple resource use efficiency (mRUE): a new concept for ecosystem production." Scientific Reports 6, 37453+ (2016). [DOI: 10.1038/srep37453 http://www.nature.com/articles/srep37453#supplementary-information] DOI Google Scholar	Sustainability
2016	Hao, X., Thelen, K. & Gao, J. "Spatial variability in biomass yield of switchgrass, native prairie, and corn at field scale." Agronomy Journal 108,2, 548-558+ (2016). [DOI: 10.2134/agronj2015.0167] DOI Google Scholar	Sustainability
2016	Harman-Ware, A.E., Foster, C., Happs, R.M., Doeppke, C., Meunier, K., Gehan, J., Yue, F., Lu, F. & Davis, M. "Quantitative analysis of lignin monomers by a thioacidolysis method tailored for higher-throughput analysis." Biotechnology Journal 11,10, 1268-1273+ (2016). [DOI: 10.1002/biot.201600266] DOI Google Scholar
2016	Helmich, K.E., Pereira, J.H., Gall, D.L., Heins, R.A., McAndrew, R.P., Bingman, C., Deng, K., Holland, K.C., Noguera, D.R., Simmons, B.A., et al. "Structural basis of stereospecificity in the bacterial enzymatic cleavage of β-aryl ether bonds in lignin." Journal of Biological Chemistry 291,10, 5234-5246+ (2016). [DOI: 10.1074/jbc.M115.694307] DOI Google Scholar	Feedstocks, Conversion
2016	Hirsch, C.N., Hirsch, C.D., Brohammer, A.B., Bowman, M.J., Soifer, I., Barad, O., Shem-Tov, D., Baruch, K., Lu, F., Hernandez, A.G., et al. "Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize." The Plant Cell 28,11, 2700-2714+ (2016). [DOI: 10.1105/tpc.16.00353] DOI Google Scholar	Feedstocks
2016	Horn, P.J. & Benning, C. "The plant lipidome in human and environmental health." Science 353,6305, 1228-1232+ (2016). [DOI: 10.1126/science.aaf6206] DOI Google Scholar	Feedstocks
2016	Horn, P.J., Liu, J., Cocuron, J.-C., McGlew, K., Thrower, N.A., Larson, M., Lu, C., Alonso, A.P. & Ohlrogge, J. "Identification of multiple lipid genes with modifications in expression and sequence associated with the evolution of hydroxy fatty acid accumulation in Physaria fendleri." The Plant Journal 86, 322-348+ (2016). [DOI: 10.1111/tpj.13163] DOI Google Scholar	Feedstocks
2016	Jin, M., Sousa, L. da C., Schwartz, C., He, Y., Sarks, C., Gunawan, C., Balan, V. & Dale, B.E. "Toward lower cost cellulosic biofuel production using ammonia based pretreatment technologies." Green Chemistry 18,4, 957-966+ (2016). [DOI: 10.1039/c5gc02433a] DOI Google Scholar	Deconstruction
2016	Kallenbach, C.M., Frey, S.D. & Grandy, S. "Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls." Nature Communications 7, 13630+ (2016). [DOI: 10.1038/ncomms13630] DOI Google Scholar	Sustainability
2016	Kang, J.-H., Campos, M.L., Zemelis-Durfee, S., Al-Haddad, J.M., Jones, D., Telewski, F.W., Brandizzi, F. & Howe, G.A. "Molecular cloning of the tomato Hairless gene implicates actin dynamics in trichome-mediated defense and mechanical properties of stem tissue." Journal of Experimental Botany 67,18, 5313-5324+ (2016). [DOI: 10.1093/jxb/erw292] DOI Google Scholar	Feedstocks
2016	Karlen, S.D., Zhang, C., Peck, M.L., Smith, R.A., Padmakshan, D., Helmich, K.E., Free, H.C.A., Lee, S., Smith, B.G., Lu, F., et al. "Monolignol-ferulate conjugates are naturally incorporated into plant lignins." Science Advances 2, (2016). [DOI: 10.1126/sciadv.1600393] DOI Google Scholar	Feedstocks
2016	Khadempour, L., Burnum-Johnson, K.E., Baker, E.S., Nicora, C.D., Webb-Robertson, B.-J.M., White, R.A., Monroe, M.E., Huang, E.L., Smith, R.D. & Currie, C.R. "The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates." Molecular Ecology 25,22, 5795-5805+ (2016). [DOI: 10.1111/mec.13872] DOI Google Scholar	Deconstruction
2016	Kim, S. & Dale, B.E. "A distributed cellulosic biorefinery system in the US Midwest based on corn stover." Biofuels, Bioproducts and Biorefining 10,6, 819-832+ (2016). [DOI: 10.1002/bbb.1712] DOI Google Scholar	Deconstruction
2016	Kim, S.-J. & Brandizzi, F. "The plant secretory pathway for the trafficking of cell wall polysaccharides and glycoproteins." Glycobiology 26,9, 940-949+ (2016). [DOI: 10.1093/glycob/cww044] DOI Google Scholar	Feedstocks
2016	Kong, L., Sen, M., Henao, C.A., Dumesic, J.A. & Maravelias, C.T. "A superstructure-based framework for simultaneous process synthesis, heat integration, and utility plant design." Computers & Chemical Engineering 91, 68-84+ (2016). [DOI: 10.1016/j.compchemeng.2016.02.013] DOI Google Scholar	Deconstruction