Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2024	Shiu, S.-H. & Lehti-Shiu, M.D. "Assessing the evolution of research topics in a biological field using plant science as an example." PLOS Biology 22,5, (2024). [DOI: 10.1371/journal.pbio.3002612] DOI Google Scholar
2024	Smith, R.A. & Ralph, J. "Cycling ferulate in monocot cell walls." Nature Plants 10, 1284–1286+ (2024). [DOI: 10.1038/s41477-024-01787-9] DOI Google Scholar
2024	Stewart, R.D., Myers, K.S., Amstadt, C., Seib, M., McMahon, K.D. & Noguera, D.R. "Refinement of the "Candidatus Accumulibacter" genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration." mSystems 9,3, (2024). [DOI: 10.1128/msystems.01188-23] DOI Google Scholar
2024	Su, Y., Mangus, A.M., Cordell, W.T. & Pfleger, B.F. "Overcoming barriers to medium-chain fatty alcohol production." Current Opinion in Biotechnology 85, 103063+ (2024). [DOI: 10.1016/j.copbio.2023.103063] DOI Google Scholar
2024	Sun, L., David, K.T., Wolters, J.F., Karlen, S.D., Goncalves, C., Opulente, D.A., LaBella, A.L., Groenewald, M., Zhou, X., Shen, X.-X., et al. "Functional and evolutionary integration of a fungal gene with a bacterial operon." Molecular Biology and Evolution 41,4, (2024). [DOI: 10.1093/molbev/msae045] DOI Google Scholar
2024	Taifan, G.S.P. & Maravelias, C.T. "Multi-technology separation system synthesis." Computers & Chemical Engineering 183, 108616+ (2024). [DOI: 10.1016/j.compchemeng.2024.108616] DOI Google Scholar
2024	Tejera-Nieves, M., Seong, D.Y., Reist, L. & Walker, B.J. "The Dynamic Assimilation Technique measures photosynthetic CO2 response curves with similar fidelity as steady-state approaches in half the time." Journal of Experimental Biology 75,10, 2819–2828+ (2024). [DOI: 10.1093/jxb/erae057] DOI Google Scholar
2024	Thibault, E. & Brandizzi, F. "Post-translational modifications: emerging directors of cell-fate decisions during endoplasmic reticulum stress in Arabidopsis thaliana." Biochemical Society Transactions 52,2, 831-848+ (2024). [DOI: 10.1042/BST20231025] DOI Google Scholar
2024	Tilhou, N.W., Bonnette, J., Boe, A.R., Fay, P.A., Fritschi, F.B., Mitchell, R.B., Rouquette, F.M., Wu, Y., Jastrow, J.D., Ricketts, M., et al. "Genomic prediction of regional-scale performance in switchgrass (Panicum virgatum) by accounting for genotype-by-environment variation and yield surrogate traits." G3: Genes \| Genomes \| Genetics 14,10, (2024). [DOI: 10.1093/g3journal/jkae159] DOI Google Scholar
2024	Turumtay, E.A., Turumtay, H., Tian, Y., Lin, C.-Y., Chai, Y.N., Louie, K.B., Chen, Y., Lipzen, A., Harwood, T., Kumar, K.S., et al. "Expression in poplar of dehydroshikimate dehydratase induces transcriptional and metabolic changes in the phenylpropanoid pathway." Journal of Experimental Botany 75,16, 4960-4977+ (2024). [DOI: 10.1093/jxb/erae251] DOI Google Scholar
2024	Aragon, N.U., Xie, Y., Bigelow, D., Lark, T.J. & Eagle, A.J. "The realistic potential of soil carbon sequestration in U.S. croplands for climate mitigation." Earth’s Future 12,6, (2024). [DOI: 10.1029/2023EF003866] DOI Google Scholar
2024	Unda, F., de Vries, L., Karlen, S.D., Rainbow, J., Zhang, C., Bartley, L.E., Kim, H., Ralph, J. & Mansfield, S.D. "Enhancing monolignol ferulate conjugate levels in poplar lignin via OsFMT1." Biotechnology for Biofuels and Bioproducts 17,1, 97+ (2024). [DOI: 10.1186/s13068-024-02544-y] DOI Google Scholar
2024	Vilbert, A.C., Kontur, W.S., Gille, D., Noguera, D.R. & Donohue, T.J. "Engineering Novosphingobium aromaticivorans to produce cis,cis-muconic acid from biomass aromatics." Applied and Environmental Microbiology 90,1, (2024). [DOI: 10.1128/aem.01660-23] DOI Google Scholar
2024	Vizza, C., Belanger, M.A., Jones, J., Murphy, S.J., Buckley, D.H., Robertson, P. & Roley, S.S. "Rainfall events stimulate episodic associative nitrogen fixation in switchgrass." Biogeochemistry 167, 1409–1424+ (2024). [DOI: 10.1007/s10533-024-01180-w] DOI Google Scholar
2024	Walters, K.A., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from microbiomes fermenting dairy coproducts." Microbiology Resource Announcements 13,7, (2024). [DOI: 10.1128/mra.00173-24] DOI Google Scholar
2024	Walters, K.A., Myers, K.S., Ingle, A.T., Donohue, T.J. & Noguera, D.R. "Effect of temperature and pH on microbial communities fermenting a dairy coproduct mixture." Fermentation 10,8, 422+ (2024). [DOI: 10.3390/ fermentation10080422] DOI Google Scholar
2024	Wang, P., Lehti-Shiu, M.D., Lotreck, S., Abá, K.S., Krysan, P.J. & Shiu, S.-H. "Prediction of plant complex traits via integration of multi-omics data." Nature Communications 15,1, 6856+ (2024). [DOI: 10.1038/s41467-024-50701-6] DOI Google Scholar
2024	Weeda, E.P., Holland, C.M., de Bueren, J.B., Yuan, Z., Alherech, M., Coplien, J., Haak, D., Hegg, E.L., Luterbacher, J., Root, T.W., et al. "O2-permeable membrane reactor for continuous oxidative depolymerization of lignin." Joule 8,12, (2024). [DOI: 10.1016/j.joule.2024.08.015] DOI Google Scholar	Conversion
2024	Wilkes, R.A., Borchert, A.J., Garcia, V.E., Geiselman, G.M., Liu, S., Guss, A.M., Michener, J.K., Noguera, D.R., Masai, E., Gladden, J.M., et al. "Comparison of microbial strains as candidate hosts and genetic reservoirs for the valorization of lignin streams." Green Chemistry 26,24, 12053-12069+ (2024). [DOI: 10.1039/D4GC03876B] DOI Google Scholar
2024	Xie, Y., Spawn-Lee, S.A., Radeloff, V.C., Yin, H., Robertson, P. & Lark, T.J. "Cropland abandonment between 1986 and 2018 across the United States: spatiotemporal patterns and current land uses." Environmental Research Letters 19, 044009+ (2024). [DOI: 10.1088/1748-9326/ad2d12] DOI Google Scholar
2024	Yoshioka, K., Kim, H., Lu, F., De Ridder, N., Vanholme, R., Kajita, S., Boerjan, W. & Ralph, J. "Hydroxycinnamaldehyde-derived benzofuran components in lignins." Plant Physiology 194,3, 1370-1382+ (2024). [DOI: 10.1093/plphys/kiad514] DOI Google Scholar
2024	Zavala, B., Dineen, L., Fisher, K.J., Opulente, D.A., Harrison, M.-C., Wolters, J.F., Shen, X.-X., Zhou, X., Groenewald, M., Hittinger, C.T., et al. "Genomic factors shaping codon usage across the Saccharomycotina subphylum." G3: Genes \| Genomes \| Genetics 14,11, (2024). [DOI: 10.1093/g3journal/jkae207] DOI Google Scholar
2024	Zou, H., Chen, J., Li, X., Abraha, M., Zhao, X. & Tang, J. "Modeling net ecosystem exchange of CO2 with gated recurrent unit neural networks." Agricultural and Forest Meteorology 350, 109985+ (2024). [DOI: 10.1016/j.agrformet.2024.109985] DOI Google Scholar
2023	Casler, M.D., Lee, D.K., Mitchell, R.B., Moore, K.J., Adler, P.R., Sulc, M., Johnson, K.D., Kallenbach, R.L., Boe, A.R., Mathison, R.D., et al. "Biomass quality responses to selection for increased biomass yield in perennial energy grasses." BioEnergy Research 16,2, 877–885+ (2023). [DOI: 10.1007/s12155-022-10513-2] DOI Google Scholar	Sustainability
2023	Dong, X., Mayes, H.B., Morreel, K., Katahira, R., Li, Y., Ralph, J., Black, B.A. & Beckham, G.T. "Energy-resolved mass spectrometry as a tool for identification of lignin depolymerization products." ChemSusChem 16,1, (2023). [DOI: 10.1002/cssc.202201441] DOI Google Scholar