| Year | Publication | Keywords |
|---|---|---|
| 2025 | Kelliher, J.M., Mirzayi, C., Bordenstein, S.R., Oliver, A., Kellogg, C.A., Hatcher, E.L., Berg, M., Baldrian, P., Aljumaah, M., Miller, C.M.L., et al. "STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies." Nature Microbiology 10,12, 3059–3068+ (2025). [DOI: 10.1038/s41564-025-02186-2] |
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| 2025 | Khana, D.B., Jen, A., Shishkova, E., Fisher, K., Thusoo, E., Williams, J., Henkel, A., Stevenson, D.M., Coon, J.J. & Amador-Noguez, D. "Thermodynamics shapes the in vivo enzyme burden on glycolytic pathways." mBio 16,10, e01837–25+ (2025). [DOI: 10.1128/mbio.01837-25] |
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| 2025 | Khanna, M., Basso, B., O’Hara, J., Zilberman, D. & Hochman, G. "Climate-smart biofuel policy as a pathway to decarbonize agriculture." Science 389,6761, 687–689+ (2025). [DOI: 10.1126/science.adw6739] |
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| 2025 | Kim, K., Geers-Lucas, M., Robertson, P. & Kravchenko, A. "Soil carbon accrual and biopore formation across a plant diversity gradient." Soil 11, 1029–1040+ (2025). [DOI: 10.5194/soil-11-1029-2025] |
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| 2025 | Ko, D.K. & Brandizzi, F. "A network-enabled pipeline for gene discovery and validation in non-model plant species." Cell Reports Methods 5,1, 100963+ (2025). [DOI: 10.1016/j.crmeth.2024.100963] |
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| 2025 | Koester, F., Myers, K.S., Donohue, T.J. & Noguera, D.R. "Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues." Microbiology Resource Announcements 14,6, e00179–25+ (2025). [DOI: 10.1128/mra.00179-25] |
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| 2025 | Koleva, D.T., Liu, M., Dusak, B., Ghosh, S., Krogh, C.T., Hellebek, I.R., Cortsen, M.T., Motawie, M.S., Jørgensen, F.S., McKinley, B.A., et al. "Amino acid substrate specificities and tissue expression profiles of the nine CYP79A encoding genes in Sorghum bicolor." Physiologia Plantarum 177,1, e70029+ (2025). [DOI: 10.1111/ppl.70029] |
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| 2025 | Kristy, B., Davidson, J., Evans, S.E. & Tiemann, L.K. "Reduced soil diazotroph diversity decreases nitrogen fixation rates but depends on land management." Applied Soil Ecology 211, 106152+ (2025). [DOI: 10.1016/j.apsoil.2025.106152] |
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| 2025 | Lee, J.H., Kim, K., Guber, A.K., Oerther, M., Kuzyakov, Y. & Kravchenko, A.N. "Direct root contact among neighboring plants influences activity of soil extracellular enzymes." Applied Soil Ecology 215, 106422+ (2025). [DOI: 10.1016/j.apsoil.2025.106422] |
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| 2025 | Lee, J.H., Ulbrich, T.C., Maxwell, O., Kuzyakov, Y., Guber, A.K. & Kravchenko, A.N. "Belowground plant carbon and nitrogen exchange: plant-derived carbon inputs and pore structure formation." Soil Biology and Biochemistry 207, 109833+ (2025). [DOI: 10.1016/j.soilbio.2025.109833] |
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| 2025 | Lee, S., West, C., Opulente, D.A., Harrison, M.-C., Wolters, J.F., Shen, X.-X., Zhou, X., Groenewald, M., Hittinger, C.T., Rokas, A., et al. "Genomic factors limiting the diversity of Saccharomycotina plant pathogens." G3: Genes | Genomes | Genetics 15,10, jkaf184+ (2025). [DOI: 10.1093/g3journal/jkaf184] |
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| 2025 | Liu, S., Chou, M.-Y., Benucci, G.M.N., Eudes, A. & Bonito, G. "Genetic modification of the shikimate pathway to reduce lignin content in switchgrass (Panicum virgatum L.) significantly impacts plant microbiomes." Microbiology Spectrum 13,1, e01546–24+ (2025). [DOI: 10.1128/spectrum.01546-24] |
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| 2025 | Lucas, M., Gil, J., Robertson, G.P., Ostrom, N.E. & Kravchenko, A. "Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification." Biology and Fertility of Soils 61,3, 367–383+ (2025). [DOI: 10.1007/s00374-023-01761-1] |
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| 2025 | Mandalika, A., Runge, T. & Ragauskas, A. "Membrane separations in biomass processing." ChemPlusChem 90,2, e202400497+ (2025). [DOI: 10.1002/cplu.202400497] |
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| 2025 | Martin, G., Austin, K., Lark, T., Lee, S. & Clark, C.M. "Tracking cropland transitions: a comparative analysis of U.S. land cover change data." PLOS ONE 20,3, e0313880+ (2025). [DOI: 10.1371/journal.pone.0313880] |
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| 2025 | McDonald, M.A., Larson, E.D., Greig, C. & Maravelias, C.T. "A control-inspired approach for energy transition planning under uncertainty." Computers & Chemical Engineering 200, 109176+ (2025). [DOI: 10.1016/j.compchemeng.2025.109176] |
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| 2025 | Metz, F., Allemann, M.N., Michener, J.K., Myers, K.S., Lu, F., Noguera, D.R. & Donohue, T.J. "RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol." Microbiology Resource Announcements 14,1, e00844–24+ (2025). [DOI: 10.1128/mra.00844-24] |
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| 2025 | Miao, G., Li, H., Zhu, Y., Chen, S., Lu, F., Ralph, J. & Xu, F. "Deep eutectic solvents for efficient fractionation of lignocellulose to produce uncondensed lignin and high-quality cellulose." ACS Sustainable Chemistry & Engineering 13, 2197–2209+ (2025). [DOI: 10.1021/acssuschemeng.4c09673] |
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| 2025 | Miller, S.T., Henzler-Wildman, K.A. & Raman, S. "Energetic and structural control of polyspecificity in a multidrug transporter." Proceedings of the National Academy of Sciences of the United States of America 122,52, e2511892122+ (2025). [DOI: 10.1073/pnas.2511892122] |
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| 2025 | Miller, S.T., Macdonald, C.B. & Raman, S. "Understanding, inhibiting, and engineering membrane transporters with high-throughput mutational screens." Cell Chemical Biology 32,4, 529–542+ (2025). [DOI: 10.1016/j.chembiol.2025.03.003] |
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| 2025 | Min, K., Nuccio, E., Slessarev, E., Kan, M., McFarlane, K.J., Oerter, E., Jurusik, A., Sanford, G., Thelen, K.D., Pett-Ridge, J., et al. "Deep-rooted perennials alter microbial respiration and chemical composition of carbon in density fractions along soil depth profiles." Geoderma 455, 117202+ (2025). [DOI: 10.1016/j.geoderma.2025.117202] |
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| 2025 | Mishra, S., Kumar, V., Misra, J., P., A.K., Sah, B. & Lal, P.B. "Genetic tools for engineering Zymomonas mobilis, Cereibacter sphaeroides and Novosphingobium aromaticivorans to improve production of bioenergy compounds." Microbial Cell Factories 24,1, 239+ (2025). [DOI: 10.1186/s12934-025-02845-3] |
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| 2025 | Mottiar, Y., Tschaplinski, T.J., Ralph, J. & Mansfield, S.D. "Suppression of chorismate mutase 1 in hybrid poplar to investigate potential redundancy in the supply of lignin precursors." Plant Direct 9,3, e70053+ (2025). [DOI: 10.1002/pld3.70053] |
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| 2025 | Myers, K.S., Linz, A.M., Baumgart, L.A., Zhang, Y., Blaby, I., Mewalal, R., Ng, V., Noguera, D.R. & Donohue, T.J. "Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors." Microbiology Resource Announcements 14,8, e00260–25+ (2025). [DOI: 10.1128/mra.00260-25] |
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| 2025 | O’Neill, E.G., Lark, T.J., Xie, Y., Kim, S., Dale, B.E., Robertson, G.P., Basso, B. & Maravelias, C.T. "Available land for cellulosic biofuel production: a supply chain centered comparison." Environmental Research Letters 20,1, 014067+ (2025). [DOI: 10.1088/1748-9326/ada301] |
