Publications

When it comes to interdisciplinary collaboration, the titles of GLBRC publications speak for themselves. Each new year of operation has seen more publications from multiple labs that span our research themes, accelerating the Center's production of the basic research that generates technology to convert cellulosic biomass to advanced biofuels and bioproducts.

Year	Publication	Keywords
2018	Scarborough, M.J., Lawson, C.E., Hamilton, J.J., Donohue, T.J. & Noguera, D.R. "Metatranscriptomic and thermodynamic insights into medium-chain fatty acid production using an anaerobic microbiome." mSystems 3,6, (2018). [DOI: 10.1128/mSystems.00221-18] DOI Google Scholar	Conversion
2018	Scarborough, M.J., Lynch, G., Dickson, M., McGee, M., Donohue, T.J. & Noguera, D.R. "Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production." Biotechnology for Biofuels 11, 200+ (2018). [DOI: 10.1186/s13068-018-1193-x] DOI Google Scholar	Conversion
2018	Sener, C., Motagamwala, A.H., Alonso, D.M. & Dumesic, J.A. "Enhanced furfural yields from xylose dehydration in the gamma-valerolactone/water solvent system at elevated temperatures." ChemSusChem DOI: 10.1002/cssc.201800730, (2018). [DOI: 10.1002/cssc.201800730] DOI Google Scholar	Conversion
2018	Shade, A. "Understanding microbiome stability in a changing world." mSystems 3,2, (2018). [DOI: 10.1128/mSystems.00157-17] DOI Google Scholar	Sustainability
2018	Shade, A., Dunn, R.R., Blowes, S.A., Keil, P., Bohannan, B.J.M., Herrmann, M., Küsel, K., Lennon, J.T., Sanders, N.J., Storch, D., et al. "Macroecology to unite all life, large and small." Trends in Ecology and Evolution 33,10, 731-744+ (2018). [DOI: 10.1016/j.tree.2018.08.005] DOI Google Scholar
2018	Shen, X.-X., Opulente, D.A., Kominek, J., Zhou, X., Steenwyk, J.L., Buh, K.V., Haase, M.A.B., Wisecaver, J.H., Wang, M., Doering, D.T., et al. "Tempo and mode of genome evolution in the budding yeast subphylum." Cell 175,6, 1533-1545+ (2018). [DOI: 10.1016/j.cell.2018.10.023] DOI Google Scholar	Conversion
2018	Song, B., Li, B., Wang, X., Shen, W., Park, S., Collings, C., Feng, A., Smith, S.J., Walton, J.D. & Ding, S.-Y. "Real-time imaging reveals that lytic polysaccharide monooxygenase promotes cellulase activity by increasing cellulose accessibility." Biotechnology for Biofuels 11,41, 11+ (2018). [DOI: 10.1186/s13068-018-1023-1] DOI Google Scholar	Deconstruction
2018	Song, Y., Mobley, J.K., Motagamwala, A.H., Isaacs, M., Dumesic, J.A., Ralph, J., Lee, A.F., Wilson, K. & Crocker, M. "Gold-catalyzed conversion of lignin to low molecular weight aromatics." Chemical Science 9,42, 8127-8133+ (2018). [DOI: 10.1039/C8SC03208D] DOI Google Scholar	Feedstocks
2018	Spiesman, B.J., Kummel, H. & Jackson, R.D. "Carbon storage potential increases with increasing ratio of C4 to C3 grass cover and soil productivity in restored tallgrass prairies." Oecologia 186,2, 565-576+ (2018). [DOI: 10.1007/s00442-017-4036-8] DOI Google Scholar	Sustainability
2018	Sprunger, C.D. & Robertson, P. "Early accumulation of active fraction soil carbon in newly established cellulosic biofuel systems." Geoderma 318, 42-51+ (2018). [DOI: 10.1016/j.geoderma.2017.11.040] DOI Google Scholar	Sustainability
2018	Stanton, C.L., Reinhard, C.T., Kasting, J.F., Ostrom, N.E., Haslun, J.A., Lyons, T.W. & Glass, J.B. "Nitrous oxide from chemodenitrification: a possible missing link in the Proterozoic greenhouse and the evolution of aerobic respiration." Geobiology 16,6, 597-609+ (2018). [DOI: 10.1111/gbi.12311] DOI Google Scholar
2018	Takeda, Y., Tobimatsu, Y., Karlen, S.D., Koshiba, T., Suzuki, S., Yamamura, M., Murakami, S., Mukai, M., Hattori, T., Osakabe, K., et al. "Downregulation of p‐COUMAROYL ESTER 3‐HYDROXYLASE in rice leads to altered cell wall structures and improves biomass saccharification." The Plant Journal 96,5, 796-811+ (2018). [DOI: 10.1111/tpj.13988] DOI Google Scholar	Feedstocks
2018	Taylor, M., Tornqvist, C.-E., Zhao, X., Grabowski, P., Doerge, R., Ma, J., Volenec, J., Evans, J., Ramstein, G.P., Sanciangco, M.D., et al. "Genome-wide association study in pseudo-F2 populations of switchgrass identifies genetic loci affecting heading and anthesis dates." Frontiers in Plant Science 9,1250, (2018). [DOI: 10.3389/fpls.2018.01250] DOI Google Scholar	Feedstocks
2018	Tian, L., Chen, J. & Shao, C. "Interdependent dynamics of LAI-albedo across the roofing landscapes: Mongolian and Tibetan plateaus." Remote Sensing 10,7, 1159+ (2018). [DOI: 10.3390/rs10071159] DOI Google Scholar	Sustainability
2018	Tian, M. & Reed, J.L. "Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis." Bioinformatics 34,22, 3882-3888+ (2018). [DOI: 10.1093/bioinformatics/bty445] DOI Google Scholar	Conversion
2018	Timokhin, V., Regner, M., Tsuji, Y., Grabber, J. & Ralph, J. "Synthesis of nepetoidin B." Synlett 29, 1229-1231+ (2018). [DOI: 10.1055/s-0036-1591556] DOI Google Scholar	Feedstocks
2018	Tornqvist, C.-E., Taylor, M., Jiang, Y., Evans, J., Buell, R., Kaeppler, S.M. & Casler, M.D. "Quantitative Trait Locus mapping for flowering time in a lowland x upland switchgrass pseudo-F2 population." The Plant Genome 11,2, 170093+ (2018). [DOI: 10.3835/plantgenome2017.10.0093] DOI Google Scholar	Feedstocks
2018	Walker, T.W., Chew, A.K., Li, H., Demir, B., Zhang, C., Huber, G.W., Van Lehn, R.C. & Dumesic, J.A. "Universal kinetic solvent effects in acid-catalyzed reactions of biomass-derived oxygenates." Energy and Environmental Science 11, 617-628+ (2018). [DOI: 10.1039/C7EE03432F] DOI Google Scholar	Conversion
2018	Wang, J.P., Matthews, M.L., Williams, C.M., Shi, R., Yang, C., Tunlaya-Anukit, S., Chen, H.-C., Li, Q., Liu, J., Lin, C.-Y., et al. "Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis." Nature Communications 9,1, 1579+ (2018). [DOI: 10.1038/s41467-018-03863-z] DOI Google Scholar	Feedstocks
2018	Wang, K., Guo, Q., Froehlich, J.E., Hersh, H.L., Zienkiewicz, A., Howe, G.A. & Benning, C. "Two abscisic acid-responsive plastid lipase genes involved in jasmonic acid biosynthesis in Arabidopsis thaliana." The Plant Cell 30,5, 1006-1022+ (2018). [DOI: 10.1105/tpc.18.00250] DOI Google Scholar	Feedstocks
2018	Wang, X., He, Q., Yang, Y., Wang, J., Haning, K., Hu, Y., Wu, B., He, M., Zhang, Y., Bao, J., et al. "Advances and prospects in metabolic engineering of Zymomonas mobilis." Metabolic Engineering 50, 57-73+ (2018). [DOI: 10.1016/j.ymben.2018.04.001] DOI Google Scholar	Conversion
2018	Wu, W., Long, M.R., Zhang, X., Reed, J.L. & Maravelias, C.T. "A framework for the identification of promising bio-based chemicals." Biotechnology and Bioengineering 115, 2328-2340+ (2018). [DOI: 10.1002/bit.26779] DOI Google Scholar	Deconstruction, Conversion
2018	Wu, W. & Maravelias, C.T. "Synthesis and techno-economic assessment of microbial-based processes for terpenes production." Biotechnology for Biofuels 11, 294+ (2018). [DOI: 10.1186/s13068-018-1285-7] DOI Google Scholar
2018	Xue, S., Jones, D., Sousa, L., Piotrowski, J., Jin, M., Sarks, C., Dale, B.E. & Balan, V. "Water-soluble phenolic compounds produced from extractive ammonia pretreatment exerted binary inhibitory effects on yeast fermentation using synthetic hydrolysate." PLOS ONE 13,3, (2018). [DOI: 10.1371/journal.pone.0194012] DOI Google Scholar	Deconstruction, Conversion
2018	Yang, S., Vera, J.M., Grass, J., Savvakis, G., Moskvin, O.V., Yang, Y., McIlwain, S.J., Lyu, Y., Zinonos, I., Hebert, A.S., et al. "Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032." Biotechnology for Biofuels 11, 125+ (2018). [DOI: 10.1186/s13068-018-1116-x] DOI Google Scholar	Conversion